BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02340.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490337 jgi|Araly1|490337|fgenesh2_kg.6__3471__AT4G02340.1 1679 0.0
> Ahg490337 jgi|Araly1|490337|fgenesh2_kg.6__3471__AT4G02340.1
Length=1045
Score = 1679 bits (909), Expect = 0.0
Identities = 981/1017 (96%), Gaps = 0/1017 (0%)
Strand=Plus/Plus
Query 34 AAGAAGCAATGGAGAAGATAGAGCACACGACGATATCTACCAATGGTATTAACATGCATG 93
|||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||
Sbjct 1 AAGAAGCAATGGAGAAGATAGAGCACACGACGGTTTCTACCAATGGCATAAACATGCATG 60
Query 94 TGGCTTCGATTGGTTCAGGTCCAGTGATCCTATTCGTCCATGGCTTTCCCGATCTCTGGT 153
||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct 61 TGGCTTCGATTGGTTCAGGTCCAGTGATCCTCTTCCTCCATGGATTCCCCGATCTCTGGT 120
Query 154 ACTCATGGCGTCACCAGCTTGTCTCTTTCGCTGCCTTAGGTTACCGCGCAATCGCTCCAG 213
|||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||
Sbjct 121 ACTCATGGCGTCACCAGCTTCTCTCCTTCGCCGCCTTAGGTTACCGCGCAATTGCTCCAG 180
Query 214 ATCTTCGAGGATACGGCGATTCCGATGCGCCGCCGTCTCGTGAATCTTACACCATCCTTC 273
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTACGCGGTTACGGCGATTCCGATGCGCCGCCGTCTCGTGAATCTTACACCATCCTTC 240
Query 274 ATATCGTCGGAGACCTCGTCGGATTACTGGATTCGCTCGGTGTTGATCGGGTTTTCCTCG 333
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 241 ATATCGTCGGAGACCTCGTCGGATTACTGAATTCACTCGGTGTTGATCGGGTTTTCCTCG 300
Query 334 TCGGTCACGATTGGGGAGCAATTGTTGCGTGGTGGCTTTGTATGATCAGGCCTGATCGAG 393
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TCGGTCACGATTGGGGAGCAATTGTTGCGTGGTGGCTCTGTATGATCAGGCCTGATCGAG 360
Query 394 TCAACGCGTTGGTCAACACTAGCGTTGTGTTTAATCCGAGGAATCCTTCTGTGAAACCTG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAACGCGTTGGTCAACACTAGCGTTGTGTTTAATCCGAGGAATCCTTCTGTGAAACCTG 420
Query 454 TTGATGCGTTTAGGGCTTTGTTCGGCGATGATTACTACATTTGCAGGTTTCAGGAGCCTG 513
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 421 TTGATGCGTTTAGGGCTTTGTTTGGCGATGATTACTACATCTGCAGGTTTCAGGAGCCTG 480
Query 514 GAGAGATCGAAGAGGACTTTGCTCAAGTTGATACAAAAAAGTTAATAACCAGATTTTTCA 573
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 GAGAGATCGAAGAGGACTTTGCTCAAGTTGATACAAAGAAGTTAATAACCAGATTTTTCA 540
Query 574 CTTCGCGTAACCCACGTCCACCTTGCATTCCAAAGTCAGTTGGTTTCAGAGGTTTACCTG 633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTCGCGTAACCCACGTCCACCTTGCATTCCAAAGTCAGTTGGTTTCAGAGGTTTACCTG 600
Query 634 ATCCACCTTCTTTGCCCGCTTGGCTCACCGAACAAGATGTCAGGTTCTACGGAGACAAGT 693
|||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 601 ATCCACCTTCTTTGCCTGCTTGGCTAACCGAAGAAGATGTCAGTTTCTACGGAGACAAGT 660
Query 694 TTAGCCAAAAAGGCTTCACCGGTGGGCTAAACTACTATCGCGCCCTGAACCTAAGCTGGG 753
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 TTAGCCAAAAAGGCTTCACCGGTGGACTAAACTACTATCGCGCCCTGAACCTAAGCTGGG 720
Query 754 AACTAACAGCTCCATGGACCGGTCTACAAATCAAAGTCCCTGTGAAATTCATAGTGGGTG 813
||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 721 AACTAACGGCTCCATGGGCCGGTCTACAAATCAAGGTCCCTGTGAAATTCATCGTGGGTG 780
Query 814 ATCTAGACATAACATACAATATCCCCGGAACAAAGGAATACATACATGAAGGTGGTTTGA 873
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 ATCTAGACATAACATACAATATCCCCGGAACGAAGGAATACATACATGAAGGTGGTTTGA 840
Query 874 AGAAGCACGTACCTTTTCTACAAGAAGTGGTGGTAATGGAAGGTGTAGGTCACTTCCTCC 933
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 AGAAGCACGTACCGTTTCTACAAGAAGTGGTGGTAATGGAAGGTGTGGGTCACTTCCTCC 900
Query 934 ATCAAGAGAAGCCTGACGAGGTCACTGACCATATCTATGGCTTCTTCAAGAAATTCAGAA 993
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 901 ATCAAGAGAAGCCTGACGAGATCACAGACCATATCTATGGCTTCTTCAAGAAATTCAGAA 960
Query 994 CCCGCGAAACCGCATCCTTGTAGTAGTTCTCCGTCTGCACAATGTCAAATTCAAGGT 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCCGCGAAACCGCATCCTTGTAGTAGTTCTCCGTCTGCACAATGTCAAATTCAAGGT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5