BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02350.1
Length=2610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490336 jgi|Araly1|490336|fgenesh2_kg.6__3470__AT4G02350.1 2067 0.0
> Ahg490336 jgi|Araly1|490336|fgenesh2_kg.6__3470__AT4G02350.1
Length=2484
Score = 2067 bits (1119), Expect = 0.0
Identities = 1196/1233 (97%), Gaps = 5/1233 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCGCTGTAACGCTTTATACCTAATCGGAGATAAAACAATGCAATCGTCGAAAGG 60
||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1 TCTTCTTCGCTGTAACGCTTTTTACCTAATCGGAGA-GAAACAATGCAATCGGCGAAAGG 59
Query 61 ACGGCGGAAAGTTGGCTCCACAACCGCCGGAGCCGGTATAGATTCGGCGGAGAAGCTCGA 120
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 60 ACGGCGGAAAGTTGGCTCCACAACCGCCGGAACCGGTATAGACTCGGCGGAGAAGCTTGA 119
Query 121 CGAGCTCTTGATATCGTCTGCCATTTGTAACGGTGAAGATTTAGGACCATTTGTTCGGAA 180
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAACTCTTGATATCGTCTGCGATTTGTAACGGTGAAGATTTAGGACCATTTGTTCGGAA 179
Query 181 AACTTTCGGTACAGGGAAACCAGAGACTCTTCTTCACCATCTCAAGTTTTTCGCACGATC 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 AACTTTCGGTACAGGGAAACCAGAGACTCTTCTTCATCATCTCAAGTTTTTCGCACGATC 239
Query 241 TAAGGAATCAGAGATCGAAGAGGTATGTAAAGCTCACTATCAAGACTTTATCCACGCCGT 300
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 TAAAGAATCAGAGATCGAAGAGGTATGCAAAGCTCACTATCAAGACTTTATTCACGCCGT 299
Query 301 AGACGATCTTAAATCGCTTCTCTCAGATGTTGAATCGCTTAAATCTGCGCTTTCCGATTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGACGATCTTAAATCGCTTCTCTCAGATGTTGAATCGCTTAAATCTGCGCTTTCCGATTC 359
Query 361 AAACTCTAAACTCCAATCTGTTGCGGCGCCGCTTCTTTCGTCTCTCGATTCGCTTGTTGA 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 AAACTCTAAACTCCAATCTGTTGCGGCGCCGCTTCTTTCGTCTCTTGATTCGCTTGTTGA 419
Query 421 GGCTCAGACTGTGTCTAAGAACGTCGATCTGGCGATTGGAGCGGTGACTCATTGTGTTCG 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GGCTCAGACTGTGTCTAAGAACGTTGATCTGGCGATTGGAGCGGTGACTCATTGTGTTCG 479
Query 481 TGTTATGGAACTTGTCTCTCGAGCTAATCAGCATCTTCAGAGCGGTAA-TTTCTACATGG 539
||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 480 TGTTATGGAACTTGTTTCTCGAGCTAATCAGCATCTTCAGAGCGGTAACTTT-TACATGG 538
Query 540 CGTTGAAATGTGTGGACTCGATTGAGAGTGATTTCATGGAGAAAACTCCTTCGTCAACGC 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGTTGAAGTGTGTGGACTCGATTGAGAGTGATTTCATGGAGAAAACTCCTTCGTCAACGC 598
Query 600 TGAAACGGATGCTTGAGAATAGGATTCCGGCGATTCGATCTTATGTGGAGAGGAAAGTGA 659
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 TGAAACGGATGCTGGAGAATAGGATTCCGGCGATTCGATCTTATGTGGAGAGGAAAGTTA 658
Query 660 ATAAGGAGTTTGGAGATTGGTTGGTTGAGATCCGTGTGGTGAGTCGGAATTTAGGTCAGT 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 ATAAGGAGTTTGGAGATTGGTTGGTTGAGATCCGTGTTGTGAGTCGGAATTTAGGTCAGT 718
Query 720 TGGCTATTGGTGAAGCTTCCGCGGCTCGTCAGCGAGAGGAGGAGCTCAGGATCAAGCAGA 779
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 719 TGGCTATTGGTGAAGCTTCTGCGGCTCGTCAGCGAGAGGAAGAGCTCAGGATCAAGCAGA 778
Query 780 GACAAGCGGAGGAGCAGAGTAGACTTAGTCTACGCGATTGCGTTTATGCGCTAAACGAAG 839
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 GGCAAGCGGAGGAGCAGAGCAGACTCAGTCTACGCGATTGCGTTTATGCGCTAAACGAAG 838
Query 840 AAGAGGATGATGAATTTGGTTCTGGCCATGAAGGCAGCGATGGTGGTAGTTCCGGAGGTG 899
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 AAGAGGATGATGAATTTGGGTCTGGTCATGAAGGCAGCGATGGTGGTAGTTCCGGAGGTG 898
Query 900 GATTGCTAGGTTTTGATTTGACACCACTT-TATAGAGCTTATCACATTCATCAGACACTA 958
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 899 GATTGCTAGGTTTTGATTTGACTCCA-TTGTATAGAGCTTATCACATTCATCAGACACTA 957
Query 959 TCTCTTGGGGATACTTTTAAGCAGTACTATTATAACAATAGGGATCTTCAGCTTACCTCT 1018
|||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 TCTCTTGGAGATAGTTTTAAGCAGTACTATTATAATAATAGGGATCTTCAGCTTACCTCT 1017
Query 1019 GACTTCCAGATTGCTGGGTTTTTCATAGTAGAGGATAGAGTTTTAAGGACTGGAGGAGGG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GACTTCCAGATTGCTGGGTTTTTCATAGTAGAGGATAGAGTTTTAAGGACTGGAGGAGGG 1077
Query 1079 TTGATTTCGAAGCTGGAAGTGGAGACTTTGTGGGATACTGCTGTTACTAAGATGTGTGCT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTGATTTCGAAGCTGGAAGTGGAGACTTTGTGGGATACTGCTGTTACTAAGATGTGTGCT 1137
Query 1139 GTGTTGGAGGATCAGTTCTCTAGAATGCAGACGGCTAATCATCTCTTACTGATTAAGGAT 1198
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 GTGTTGGAGGATCAGTTCTCTAGAATGCAGACGGCTAATCATCTCTTGCTGATTAAGGAT 1197
Query 1199 TATGTGAGCTTGTTGGGGGTGAGTCTACGCAGG 1231
|||||||||||||| ||||||||||||||||||
Sbjct 1198 TATGTGAGCTTGTTAGGGGTGAGTCTACGCAGG 1230
Score = 1973 bits (1068), Expect = 0.0
Identities = 1195/1258 (95%), Gaps = 2/1258 (0%)
Strand=Plus/Plus
Query 1276 CAGGGACAAGTATCATGAGTTGTTACTATCTGATTGCCGTAAACAGATCACAGAAGCTTT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CAGGGACAAGTATCATGAGTTGTTACTATCTGATTGCCGTAAACAGATCACAGAAGCTTT 1286
Query 1336 ATCAGCAGATAAGTTTGAGCAGATGTTGATGAAGAAAGAATATGAGTATTCCATGAATGT 1395
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1287 ATCAGCTGATAAGTTTGAGCAGATGTTGATGAAGAAAGAGTATGAATATTCCATGAATGT 1346
Query 1396 GCTCTCTTTCCAGTTACAAACATCAGAAATAGTACCGGCATTCCCTTTCATTGCTCCATT 1455
||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1347 GCTCTCTTTCCAGTTACAAACATCAGATATAGTACCAGCATTCCCTGTCATTGCTCCATT 1406
Query 1456 TTCGACCACCGTCCCAGATTGTTGCCGGATTGTGAGGTCTTTTATCGAGGATTCGGTTAG 1515
|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1407 TTCGACCACCATCCCAGATTGTTGCCGAATTGTGCGGTCTTTTATCGAGGATTCGGTTAG 1466
Query 1516 TTTCATGTCTCACGGAGGTCAGCTTGATTTCTATGATGTAGTGAAGAAGTATCTGGATAG 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 TTTCATGTCTCACGGAGGTCAGCTTGATTTCTATGATGTAGTGAAGAAGTATCTGGATAG 1526
Query 1576 GCTTCTAGGCGAGGTTCTCGATGAGGCTCTGTTGAAGCTGATTAGCACGTCGGTTCATGG 1635
||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1527 ACTTCTAGGCGAGGTTCTTGACGAGGCTCTGTTGAAGCTGATTAACACGTCGGTTCATGG 1586
Query 1636 AGTTTCTCAGGCAATGCAAGTTGCAGCAAACATGGCCGTATTTGAACGAGCTTGCGATTT 1695
|||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1587 AGTTCCTCAGGCAATGCAAGTTGCAGCAAACATGGCCGTGTTTGAGCGTGCTTGCGATTT 1646
Query 1696 CTTCTTCCGTCACGCTGCACATCTTTCAGGAGTTCCTTTGAGAATGGCGGAGAGAGGTAG 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 CTTCTTCCGTCACGCTGCACATCTTTCAGGAGTTCCTTTGAGAATGGCGGAGAGAGGTAG 1706
Query 1756 GAGGCATTTCCCATTGACGAAATCTCAAAACACTGCAGAAGATACACTCTCAGGAATGCT 1815
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1707 GAGGCATTTCCCATTGACCAAATCTCAAAACGCTGCAGAAGATACACTCTCAGGAATGCT 1766
Query 1816 TAAGAAGAAGATAGATGGTTTCATGACATTACTCGAGAATGTCAATTGGACAAGCGACGA 1875
|||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1767 TAAGAAGAAGGTAGATGGTTTCATGACGTTGCTCGAGAATGTCAATTGGACAAGTGACGA 1826
Query 1876 TATACCACAAGGTGGGAATGAGTACATGAACGAAGTGTTGATCTACTTGGAAACTTTGGT 1935
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1827 TATTCCACAAGGTGGGAATGAGTACATGAACGAAGTGTTGATGTACTTGGAAACTTTGGT 1886
Query 1936 TTCCACCGCACAACAGATCTTACCCGCTAAAGTCTTGAAAAGGGTTTTGCGTGATGTCCT 1995
|||||| || |||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 1887 TTCCACTGCGCAACAGATATTACCCGCTAAAGTCTTGAAAAGGGTTTTGCGCGATGTCAT 1946
Query 1996 TGCTCACATTTCTGAGAAAATCGTTGGAACGTTATGCGGGGATCTAGTAAAAAGATTGAG 2055
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1947 TGCTCACATTTCTGAGAAAATCGTTGGAACGTTATGCGGAGATCTAGTAAAAAGATTGAG 2006
Query 2056 CATGGCTGCAATCAAAGGACTTGATGTGGATATTCAGTTGTTGGACTCGTTTACAGAGAA 2115
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2007 CATGGCTGCAATCAAAGGACTTGATGTGGATATTCAGTTGCTGGACTCGTTTACAGAGAA 2066
Query 2116 CCTAACTCCATTGCTCACGGATAAAGAAGCAAGAGAGATGAAAAAAGCGTTTGTCGAGAT 2175
||||||||||| ||||| ||||||||||| ||||||||||||||||| || |||||||
Sbjct 2067 TCTAACTCCATTTCTCACAGATAAAGAAGCGAGAGAGATGAAAAAAGCATTCATCGAGAT 2126
Query 2176 AAGACAGATGATCAATTTACTTCTGAGTAGTCATCCTGAGAATTTTGTAAACCCGGTGAT 2235
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||
Sbjct 2127 AAGACAGATGATCAATTTGCTTCTGAGTAGTCACCCTGAGAATTTCGTTAACCCGGTTAT 2186
Query 2236 CAGAGAAAGAAGCTACAATGCTTTGGATTACCGGAAAGTAGCCACGGTTTCAGAGAAATT 2295
||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct 2187 CAGAGAAAGAAGCTACAATGCCTTGGATTACCGGAAAGTTGCAACAGTTTCAGAGAAATT 2246
Query 2296 CAGAGATCCATCAGATAGTATTTTCGGGACTTTTGGAACAAGAGGGTCGAGGCAAAACCC 2355
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2247 CAGAGACCCATCAGATAGTATTTTCGGGACTTTTGGAACAAGAGGATCGAGGCAAAACCC 2306
Query 2356 GAAGAACAAATCTTTAGATGCGTTGATAAAGAGATTGAAAGATGTGAGCTGATGATGGAT 2415
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 2307 GAAGAATAAATCGTTAGATGCGTTGATAAAGAGACTGAAAGATGTGAGCTGATGATGTAT 2366
Query 2416 CCC-AGCACAAACCCAAAACGTAAGTACGATCCCGTCCTTTGTGTTAATTATATGATTGC 2474
|| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2367 CCAGAGCACAAACCCAAAGCGTAAGTACGATCCCGTTCTTGGTGTTAATTATATGATTGC 2426
Query 2475 TTTGTATTTCATTGTTGATGATTCGTTGG-TCTCTCAAAAAGAAAGGCaaaaaaaaaa 2531
||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2427 TTTATATGTCATTGTTGATGATTCGTTGGGTCTCTCAGAAAGAAAGGCAAAAAAAAAA 2484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98425193080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5