BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02360.1
Length=592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490335 jgi|Araly1|490335|fgenesh2_kg.6__3469__AT4G02360.1 789 0.0
> Ahg490335 jgi|Araly1|490335|fgenesh2_kg.6__3469__AT4G02360.1
Length=563
Score = 789 bits (427), Expect = 0.0
Identities = 507/545 (93%), Gaps = 7/545 (1%)
Strand=Plus/Plus
Query 29 TAAAGAA-CCATGTCGCTAGACGCGAATACTTGTTCTATCGTCTTC--T-TTCTATTCT- 83
||||||| ||||||||| | |||||||||||||| ||||| ||||| | |||||||||
Sbjct 21 TAAAGAACCCATGTCGCCATACGCGAATACTTGTACTATCATCTTCTTTCTTCTATTCTG 80
Query 84 TCACTGTCTCTTTCGCCGTCTCCGGCCAAAAGCCAACCGCTTACGACGCCGTCAAACTCT 143
| || ||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||
Sbjct 81 T-ACCGTCTCTTTCGCCGTCCCCGACCAAAAGCCAACCGCTTACGACGCCGTGAAACGCT 139
Query 144 ATAACTTACCACCAGGAATCCTCCCAAAAGGAGTGGTTGACTATGAGCTTAACCCAAAAA 203
||||||||||||| |||||||| ||||| || || | ||||| ||||||||||||||||
Sbjct 140 ATAACTTACCACCCGGAATCCTACCAAATGGCGTTATAGACTACGAGCTTAACCCAAAAA 199
Query 204 CAGGCAACTTCAAAGTCTACTTCAATGACACGTGTGAATTCACCATCCAATCCTACCAGC 263
| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CCGGCGATTTCAAAGTTTACTTCAATGACACGTGTGAATTCACCATCCAATCCTACCAGC 259
Query 264 TCAAGTACAAATCAACTATCTCCGGCGTTATATCACCCGGTCATGTCAAGAATCTGAAAG 323
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 260 TCAAGTACAAATCAACTATCTCCGGCGTTATATCTCCCGGTCACGTCAAGAATCTGAAAG 319
Query 324 GAGTTAGTGTTAAGGTTCTTTTCTTCTGGGTTAATATTGCTGAAGTGTCTCTTGACGGCG 383
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GCGTTAGTGTTAAAGTTCTTTTCTTCTGGGTTAATATTGCTGAAGTGTCTCTTGACGGCG 379
Query 384 CCGATCTCGACTTCTCCGTCGGAATCGCGTCGGCGAGTTTTCCGGCTGCTAATTTTGAAG 443
| |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 380 CTGATCTCGATTTCTCCGTCGGAATCGCGTCGGCGAGTTTTCCGGCGGCTGATTTTGAAG 439
Query 444 AGAGTCCTCAGTGTGGTTGTGGGTTTGATTGTAATAATGGGCTTTTATTTTCTTCTTGAA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AGAGTCCTCAGTGTGGTTGTGGGTTTGATTGTAATAATGGGCTTTTATTTTCTTCTTGAA 499
Query 504 TCTGTTGGGCCTTGTGTTGTACTGAATAAAAAATGCCCTTCTCTTATGATTGGCTTATGA 563
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 500 TCTGTTGGGCCTTATGTTGTACTGAATAAAAA-TGCCCTTCTCTTATGACTGGCTTATGA 558
Query 564 GTATT 568
|||||
Sbjct 559 GTATT 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21672374552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5