BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02370.1

Length=869
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490334 jgi|Araly1|490334|fgenesh2_kg.6__3468__AT4G02370.1         737    0.0  


> Ahg490334 jgi|Araly1|490334|fgenesh2_kg.6__3468__AT4G02370.1
Length=664

 Score =  737 bits (399),  Expect = 0.0
 Identities = 485/523 (93%), Gaps = 20/523 (4%)
 Strand=Plus/Plus

Query  113  AAACCCAAATGTCTCGTCTCCCGATTTTAATCGCTTCGTGT-CTCTTCCTCTCTTCACTC  171
            ||||||||||||||| ||||||||||||||||||||| | | ||||||||||||||||| 
Sbjct  62   AAACCCAAATGTCTCATCTCCCGATTTTAATCGCTTC-TTTACTCTTCCTCTCTTCACT-  119

Query  172  ACCGCCGCCGTCGTCACCGCCGCCGAATCCGATACTCCGACGGCTTATTCACTCCTCCAA  231
              |||||||| |  || |||||||||||| |||||||||||||| |||||||||||||||
Sbjct  120  --CGCCGCCG-C--CATCGCCGCCGAATCGGATACTCCGACGGCGTATTCACTCCTCCAA  174

Query  232  AGCTACAACTTCCCCGTCGGAATCCTTCCAAAAGGAGTCGTAGCTTATGATTTAGACACA  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  AGCTACAACTTCCCCGTCGGAATCCTTCCAAAAGGAGTCGTAGCTTATGATTTAGACACA  234

Query  292  ACAACAGGCAAATTCCATGCGTATTTCAACGATTCATGTAGCTTCAATCTTGTTGGTTCT  351
            |||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||||
Sbjct  235  ACAACAGGAAAATTCCATGCGTATTTCAACGATTCATGTAGCTTCTCTCTTGTGGGTTCT  294

Query  352  TACCAATTGAATTACAAATCAACAATCAGTGGTTACATCTCCGAGAACAAGCTCAAGAAA  411
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  TACAAATTGAATTACAAATCAACAATCAGTGGTTACATCTCCGAGAACAAGCTCAAGAAA  354

Query  412  TTGACTGGTGTTAAAGTCAAAGTTTTGTTCTTGTGGCTTAACATCGTCGAGGTTATTAGA  471
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  355  TTGACTGGTATTAAAGTCAAAGTTTTGTTCTTGTGGCTTAACATCGTCGAGGTTATTAGA  414

Query  472  AACGGTGACGAGATGGAGTTTTCCGTTGGGATCACATCGGCGAATTTCGCGATCCAAGAG  531
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  AACGGAGACGAGATGGAGTTTTCCGTTGGGATCACATCGGCGAATTTCGCGATCCAAGAG  474

Query  532  TTTTTGGAATCGCCTCAGTGTGGTTGTGGCTTTGAGTGCAAGGATTCGAAATTGGACATG  591
            ||||||||||||||||||||||| ||||| |||||||||||||| || ||||    |  |
Sbjct  475  TTTTTGGAATCGCCTCAGTGTGGGTGTGGATTTGAGTGCAAGGAATCAAAAT----C--G  528

Query  592  ATTGAGAGAATCCCTTTTCTTTCTTCGTCTTGAAATTGAAAAA  634
            |  || | |  ||||||| ||||||||||||||| ||||||||
Sbjct  529  A--GA-A-A--CCCTTTTGTTTCTTCGTCTTGAATTTGAAAAA  565


 Score = 65.8 bits (35),  Expect = 5e-10
 Identities = 42/45 (93%), Gaps = 2/45 (4%)
 Strand=Plus/Plus

Query  788  AAAAGAAAAGATACT-GAAGGGAGATGTGAACATTGTGAAGTGAA  831
            |||||||||| || | |||||||||||||||||||||||||||||
Sbjct  619  AAAAGAAAAG-TAATAGAAGGGAGATGTGAACATTGTGAAGTGAA  662



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32175741948


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5