BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02380.1

Length=694
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327563 jgi|Araly1|327563|fgenesh1_pm.C_scaffold_6002783           616    9e-176


> Ahg327563 jgi|Araly1|327563|fgenesh1_pm.C_scaffold_6002783
Length=543

 Score =  616 bits (333),  Expect = 9e-176
 Identities = 429/471 (91%), Gaps = 24/471 (5%)
 Strand=Plus/Plus

Query  24   AAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGTA  83
            |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  
Sbjct  87   AAAG-CTTGAGAGAGAGAACACAGACGAAACCAACTTTCTTCAATCTCGTTGCCGCAG--  143

Query  84   TAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGCGGCGACAAGAAGCTACAAGA  143
            |||| |||||||||||||| || ||||||||||||||||||||||||||||   | || |
Sbjct  144  TAATAATCTCATTCCTCGGGTAAATCTCTCCTTCTGCGGCGGCGACAAGAAAAAAAAAAA  203

Query  144  A---T-AA------AAAGTCTGTTTTCTCTCTTTTCAAGAAACCACTTACTTCGAAAATG  193
            |   | ||      |  ||||||||||||||  |||||||||| || |||||||||||||
Sbjct  204  AGTTTCAACCTTTTATTGTCTGTTTTCTCTC--TTCAAGAAACTACATACTTCGAAAATG  261

Query  194  GCTCGTTCTATCTCTAACGTTAAGATCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAAT  253
            ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  262  GCTCGTTCTTTCTCTAACGTCAAGGTCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAAT  321

Query  254  GCTATCTTCCGACGTGGTTATGCGGCCACGGCGGCGCAAGGGAGCGTTTCGAGCGGTGGA  313
            ||||||||||||||||||||||||||||||||||| | |   || |    ||||||||||
Sbjct  322  GCTATCTTCCGACGTGGTTATGCGGCCACGGCGGCTC-A---AG-G----GAGCGGTGGA  372

Query  314  AGAAGTGGAGCTGTTGCTTCGGCTGTGATGAAGAAGAAGGGAGTGGAAGAATCAACCCAG  373
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  373  AGAAGTGGAGCTGCTGCTTCGGCTGTGATGAAGAAGAAGGGAGTGGAAGAATCAACCCAG  432

Query  374  AAGATTTCTTGGGTTCCAGATCCCAAAACCGGTTATTACAGACCCGAAACCGGTTCCAAC  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  433  AAGATTTCTTGGGTTCCAGATCCCAAAACCGGTTATTACAGACCCGAAACCGGTTCCAAC  492

Query  434  GAGATTGACGCGGCTGAGCTACGAGCAGCTCTCTTGAACAACAAGCAGTGA  484
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  493  GAGATTGACGCGGCTGAGCTACGAGCAGCTCTCTTGAACAACAAGCAGTGA  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25504231473


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5