BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02400.1
Length=2726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490329 jgi|Araly1|490329|fgenesh2_kg.6__3463__AT4G02400.1 2852 0.0
Ahg350126 jgi|Araly1|350126|fgenesh1_pg.C_scaffold_6000719 1227 0.0
> Ahg490329 jgi|Araly1|490329|fgenesh2_kg.6__3463__AT4G02400.1
Length=2720
Score = 2852 bits (1544), Expect = 0.0
Identities = 1705/1783 (96%), Gaps = 9/1783 (1%)
Strand=Plus/Plus
Query 924 GTGTCGATGGAAGACCACATCAAGTACCGTGACCACATTGCCAAGATGCGGAGCCTGCTA 983
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GTGTCAATGGAAGACCACATCAAGTACCGTGACCACATTGCCAAGATGCGGAGCCTGCTC 1002
Query 984 TTCCGCCATGAACTGAAAAGTAAACGTATCAAGAAGATTAAGTCTAAAACTTATCATCGC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TTCCGCCATGAACTGAAAAGTAAACGTATCAAGAAGATTAAGTCTAAAACTTATCATCGC 1062
Query 1044 CTTAAAGGGAAGGACCTGAAGAAATCAGCGATGGGAGCATTAATGGACCCAGAAATGGCT 1103
|||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1063 CTTAAAGGCAAAGACCTGAAGAAATCGGCCATGGGAGCATTTATGGACCCAGAAATGGCT 1122
Query 1104 AAAGAAGAGGCTATTAAGCAGGAGACTAGACGAGTAGAGGAACGGATGACTTTGAAGCAC 1163
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1123 AAAGAAGAGGCTATTAAGCAGGAGACTAGACGAGTAGAGGAACGGATGACGTTGAAGCAC 1182
Query 1164 AAAAACACAGGAAAATGGGCCAAACGCATGTTAAGCCGTGGACTGACTGAGAGATATGAT 1223
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1183 AAAAACACCGGAAAATGGGCCAAACGCATGTTAAGCCGTGGACTGAATGAGAGATATGAT 1242
Query 1224 GGAACTAGGGCAGCTATATCTGAACAACTTCAGATTAATGCTACTTTGTCCAGAAAGATG 1283
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1243 GGAACTCGGGCAGCTATATCTGAACAACTTCAGATTAATGCCACTTTGTCAAGAAAGATG 1302
Query 1284 AACTCCACGAACGATGGAAGTAGTAGTGATGAGAGCGACGATGAGGAAGAGTTGAGTTGT 1343
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1303 AACTCCACGAACGATGGAAGTAGCAGTGATGAGAGCGACGATGAGGAAGAGTTGAGTTGT 1362
Query 1344 GGTTCAGATCAGGATACTCCTTCTAAATTGATAGCGAAAGCCAGGGAGAAGACACTGAAA 1403
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1363 GGTTCAGATCTGGATACTCCTTCTAAATTGATAGCAAAAGCCAGGGAGAAGACACTGAAA 1422
Query 1404 ACTATGGAAGATGATGATGTACCCAATTCTGGTCTTCTTTCATTACCTTTCATGGCTCGT 1463
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 ACTGTGGAAGATGATGAAGTACCCAATTCTGGTCTTCTTTCATTACCTTTCATGGCTCGT 1482
Query 1464 GCTATGAAAAAGAAAAATGAGGAAGCTAATGAAGAAGCTAAACGTGCATTTGGGGAGTAT 1523
||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1483 GCTATGAAAAAGAAAAACGAGGAAGTTAATGAAGAAGCTAAACGTGCATTTGAGGAGTAT 1542
Query 1524 AAAGAATTGGAGAATTTTGGTGGAGAAGATAATCCTAAAAAATCCGCTGATGTTAGTGGT 1583
|||| |||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 1543 GAAGAGTTGGAGAATTCTGGTGGAGCAGAAAATCCTAGAAAATCCGCTGATGTTAGTGGT 1602
Query 1584 AGAAGAGTATTTGGTGCCACCTCTAAAGTCGAAGCTCCAAAAGAGTCTAAAAAGGACTCG 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 AGAAGAGTATTTGGTGCCACCTCTAAAGTCGAAGCTCCAAAAGAGTCTAAAAAGGACTCG 1662
Query 1644 GACAATTTTTATGACAACAGTGATAGTGACAATGATATGGAAGGTATAGAAAATAATGAC 1703
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1663 GACAACTTTTATGACAACAGTGATAGTGAAAATGATATGGAAGGCATAGAAAATAATGAC 1722
Query 1704 CTTG-GGGCTGTTGGAGATACTGCTTCACCTGCTAGAAACACTGGAGCCATAACAGAGAC 1762
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1723 CTTGTGGG-TATTGGAGATACTGCTTCACCTGCTAGAAACACTGGAGCCATAACAGAGGC 1781
Query 1763 CGAGAAGTGTTG-TGGTGATGTTGAAAATCCAGCTTCTAAGACAACATTTGATGTTGCCT 1821
|||||| | | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 TGAGAAG-CTCGATGATGATGTTGAAAATCCAGCTTCTAAGACAACATTTGATGTTGCCT 1840
Query 1822 TATTTGCGTCAGGCTCTTGGAAGAAGATGAAAGGCTCCCAAAATGCAGAATCCAAAAAAG 1881
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1841 TATTTGCGTCAGGCTCTTGGAAGAAGATGAAAGGCTGCCAAAATGCAGAATCCAAAAAAC 1900
Query 1882 CTCCAAAGACTCGTGTACCAATCTCAAAGGGCCAAGATAAAAAGGAATCGAGAGATGAAG 1941
|||||||||| | | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1901 CTCCAAAGACACATAAACCAATTTCAAAGGGCCAAGATAAAAAGGAATCGAGAGATGAAG 1960
Query 1942 AAAGTGAAGATTCAGAGAGTGAAGCTGAGCAAATGGTTGATGGGATTTTGACATCTGCTT 2001
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1961 AAAGTGAAGATTCCGAGAGTGAAGCAGAGCAAATGGTTGATGGGATTTTGACATCTGCTT 2020
Query 2002 CGAAGGAGACCTATGAAATCCCTTCTCAAGCAGAGCTTATACAACGTGCTTTTGCTGGTG 2061
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 CAAAGGAAACCTATGAAATTCCTTCTCAAGCAGAGCTTATACAACGTGCTTTTGCTGGTG 2080
Query 2062 ATGACGTTGTAGAAGAATTTGAGAAGGATAAGCAAGAAGTTCTAAATCAGGAAGTTCCTG 2121
|||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2081 ATGACGTTGTTGATGAATTTGAGAAGGATAAACAAGAGGTTCTAAATCAGGAAGTTCCTG 2140
Query 2122 AACCGGAAAAGCCGGTTCTAGTTCCTGGTTGGGGACAATGGACCAATGTCCAAAAG-AAG 2180
|||||||||| || ||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 2141 AACCGGAAAAACCAGTTCTAGTTCCTGGTTGGGGACAATGGACCAATATCC-AAAGAAAG 2199
Query 2181 AGAGGTTTACCTTCATGGATGGTTAGAGAACATGAAGATGCAAATAAAAAGAGAAAGCTA 2240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2200 AGAGGTTTACCTTCATGGATGGTTAGAGAACATGAAGATGCAAAGAAAAAGAGAAAGCTA 2259
Query 2241 GATCTCAAAACAAGGAAAGACTATCGTCTCAGAAATGTTATCATATCAGAGAAAGTCGAT 2300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2260 GATCTCAAAACAAGGAAAGACTATCGTCTCAGAAATGTTATCATATCAGAAAAAGCCGAT 2319
Query 2301 AAAAAGGCTGACAAACTTCATACAACGACTCTACCTTTCCCATATACATCTAAGGAAGTT 2360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2320 AAAAAGGCTGACAAACTTCATACGACGACTCTACCTTTCCCATATACATCTAAGGAAGTT 2379
Query 2361 TTCGAACACAGCATGCGCATGCCTATAGGACCCGAGTTTAATCCTGCGACTATTGTTGGA 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 TTCGAACACAGCATGCGCATGCCTATAGGACCCGAGTTTAATCCTGCGACTATTGTTGGA 2439
Query 2421 GCTCTCAACCGACCCGAGGTTGTGAAGAAAGCTGGTGTGATAATTAAACCGGTCAAATTT 2480
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2440 GCTCTAAACCGACCAGAGGTTGTGAAGAAAGCTGGTGTGATAATTAAACCGGTCAAATTT 2499
Query 2481 GAGGAAGTGAATCCAAACGAGAAAGCAGATGACGAAAACCCTCGAAGCCATcaaaaacaa 2540
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2500 GAGGAAGTGAATCCAAACGAGAAAGTTGATGATGAAAACCCTCGAAGCCATCAAAAACAA 2559
Query 2541 agacccaaaaagggtagtaaaaccagtaaaggtcaaggcaaaaacaagtccaagCTAAAG 2600
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2560 AGACCCAAAAAGGGTAGTAAAACCAGTAAAGGTCAAAGCAAAATCAAGTCCAAGCTAAAG 2619
Query 2601 ACCAAAGCTTAGCTCTCAAGATTTCTGTATTCTCAAAACTTGTTTAGACACAAATTTTGA 2660
|| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2620 ACTAAAGCTTAGCTCCCAAGATTTTTGTATTCTCAAA-CTTGTTTAGACACAAATTTTGA 2678
Query 2661 TCC-AAAAGAAAACAGTTTTGCTTTGTAATTTGTCTTATTTAT 2702
||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 2679 TCCGAAAAGAAAA-AGTTTTGCTTTGTAATTTGTCTTATTTAT 2720
Score = 1273 bits (689), Expect = 0.0
Identities = 838/908 (92%), Gaps = 17/908 (2%)
Strand=Plus/Plus
Query 18 CaaaaaaaaaaaaaaGCAGAGGCAGCCATGGGAGAAAAGAGAAAATCTACTTCGAAAACC 77
||||||||||| || |||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1 CAAAAAAAAAACAAGGCAGAGGCAGCCATGGGAGAAAAGAGGAGATCTAGTTCGAAAACC 60
Query 78 CTAGCTAAGAACAAGAAGAGGAAAGGTCCTCATTTGCCTAATTCAATCCTGAAGACTATT 137
||||||||||||||||||||| ||||||||||||| |||||||| || || |||||||||
Sbjct 61 CTAGCTAAGAACAAGAAGAGGCAAGGTCCTCATTTACCTAATTCGATACTCAAGACTATT 120
Query 138 GCCAATGAGAAACGTCCTTTGAACTCTGACGAAGATGACGATGAGATCGATTCCGACGAT 197
|||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| | |
Sbjct 121 GCCAATGAGAAACGTCCTTTGAACTCCGACGAAGAAGACGATGAGATCCATTCCGATGGT 180
Query 198 GAAAACGTCGATTTGTATGAGTATGAAGAAGGTGTGCCTGAGGAAGAGTCTAAGAAAAAC 257
|| ||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 181 GAGAACGTCGATATGTATGAGTACGAAGAAGGTGAGCCTGAGGAAGAGTCCAAGAAAAAC 240
Query 258 AATCGCTATGACCGCGTCGATAACTACGACTACGAGCTTCCCGAGGATTTCGAGGATGAA 317
|||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 241 AATCGCTATGACCGTGTCGATAACTACGAATACGAGCTTCCCGAGGATTTC--------- 291
Query 318 AATGTGGAGTCAGATGATGATGAAGATGGTGGAAACAGCGAGAATGAGGAAGGTGAAGGT 377
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 292 ------GAGTCAGATGATGATGAAGATGGTGGTAACAGCGACAATGAGGATGGTGAAGGT 345
Query 378 GATGACGATAGACACACACGGATGTTGCAAGGTCTCACTGGAATGCCAAGTGCTGCCTTT 437
||||| ||||||||||| || |||||||||| ||||||||||||||||||||| ||||||
Sbjct 346 GATGATGATAGACACACTCGTATGTTGCAAGATCTCACTGGAATGCCAAGTGCAGCCTTT 405
Query 438 CAAGAAGAGAGTAAGAAG-AGACCTGTACTCTATACTGAAGCGTATCCAGAGTCTGAATT 496
|||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 406 CAAGGAGAGAGTAAG-AGAAGACCTGTACTCTTTACTGAAGCGTATCCAGAGTCTGAATT 464
Query 497 CAATCCTACCCGTGATGTTCTGGAGGGTAAAGGCCTCATCTCAGTTGAGGACCTTTTGGC 556
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 465 CAATCCTACCCGTGATGTTCTGGAGGGTAAAGGCCTCATTTCAGTTGAGGACCTTTTGGC 524
Query 557 GCCTCTTGAAGGAAAACCTGGGTTTAACGATCTAAATAAGAGGATCAACCGGATGCAGAA 616
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 525 GCCTCTTGAAGGAAAACCTGGGTTTAATGATCTTAAGAAGAGGATCAACCGGATGCAGAA 584
Query 617 AGATACTCAGTCTGTTGTTCATGCACCTTTGCCTAAGCCAGAACGAGAAAGACTAGAGCG 676
|||||||||||||||||||||||| ||| |||| |||||||||||||||||||| || ||
Sbjct 585 AGATACTCAGTCTGTTGTTCATGCTCCTCTGCCAAAGCCAGAACGAGAAAGACTGGAACG 644
Query 677 GAAAGCTGTGAAAGGACTAGTTGAGAAGGACTTTAATAAGTGGGTGCATCTGGTCAAGAG 736
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 645 GAAAGCTGTGAAAGGACTAGTTGAGAAAGAGTTTAATAAGTGGGTGCATCTGGTCAAGAG 704
Query 737 GAATAGGGAGGCACCAACTGTTTACTTTAATCAACCTGTCAATGTTGGGTATTCTACAGT 796
||||||||||||||||||||||||||| || ||| |||||| |||||| || ||||||||
Sbjct 705 GAATAGGGAGGCACCAACTGTTTACTTCAACCAAACTGTCAGTGTTGGCTACTCTACAGT 764
Query 797 CGGTGCAATAGCATCAGAGTTTCAACCCAGGACTGAATTTGAGAAGAAAATGGCTTCTGT 856
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGGCGCAATAGCATCAGAGTTTCAACCCAGGACTGAATTTGAGAAGAAAATGGCTTCTGT 824
Query 857 ACTCAAAGATAACGAGCTTGGGGAGGCTCACAAAGAAGATGGCGCTAAGCTTCTTGAATT 916
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 ACTCAATGATAACGAGCTTGGGGAGGCTCACAAAGAAGATGGCGCTAAGCTTCTTGAATT 884
Query 917 GAATGAGG 924
||| ||||
Sbjct 885 GAACGAGG 892
> Ahg350126 jgi|Araly1|350126|fgenesh1_pg.C_scaffold_6000719
Length=2325
Score = 1227 bits (664), Expect = 0.0
Identities = 1177/1415 (83%), Gaps = 74/1415 (5%)
Strand=Plus/Plus
Query 377 TGATGACGATAGACACACACGGATGTTGCAAGGTCTCACTGGAATGCCAAGTGCTGCCTT 436
|||||| ||||| ||||||||||||||| ||| | |||||||| |||||| ||| |||||
Sbjct 294 TGATGAAGATAGGCACACACGGATGTTGAAAGATGTCACTGGATTGCCAATTGCAGCCTT 353
Query 437 TCAAGAAGAGAGTAAGAAG-AGACCTGTACTCTAT-ACTGAAGCGTATCCAGAGTCTGAA 494
||||| |||||||||| || | || |||| ||| | |||||| | |||||||||||||||
Sbjct 354 TCAAGGAGAGAGTAAG-AGCAAACGTGTAGTCT-TCACTGAACCATATCCAGAGTCTGAA 411
Query 495 TTCAATCCTACCCGTGATGTTCTGGAGGGTAAAGGCCTCATCTCAGTTGAGGACCTTTTG 554
||||||||||||||||||||||||||||||||| ||||| | || |||| |||||| ||
Sbjct 412 TTCAATCCTACCCGTGATGTTCTGGAGGGTAAATCCCTCACCACAATTGATGACCTTATG 471
Query 555 GCGCCTCTTGAAGGAAAACCTGGGTTTAACGATCTAAATAAGAGGATCAACCGGATGCAG 614
| ||||||| ||||| |||||| | || | | |||| || | |||| |||||||| |
Sbjct 472 GAGCCTCTTCAAGGATTACCTGGATATAGCAAACTAAGCAATATGATCTTCCGGATGC-G 530
Query 615 AAA-GATACTCAGTCTGTTGTTCATGCACCTTTGCCTAAGCCAGAACGAGAAAGACTAGA 673
||| ||||| |||||| |||||||||| ||| |||| |||| ||||||||||||||| ||
Sbjct 531 AAAAGATACGCAGTCTCTTGTTCATGCTCCTCTGCCAAAGCAAGAACGAGAAAGACTGGA 590
Query 674 GCGGAAAGCT-GTGAAAGGACTAGTTGAGAAGGACTTTAATAAGTGGGTGCATCTGGTCA 732
||||| | | ||||||| ||||||||| |||| |||||||| ||||||| |||||| |
Sbjct 591 ACGGAATG-TAGTGAAAGAACTAGTTGACAAGGTGTTTAATAATTGGGTGCCTCTGGTAA 649
Query 733 AGAGGAATAGGGAGGCACCAACTGTTTACTTTAATCAACCTGTCAATGTTGGGTATTCTA 792
|||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||
Sbjct 650 AGAGGAATAGGGAGGCACCAACTGTTTACTTTAACCAAGATGTCAATGTTGGATACTCTA 709
Query 793 CAGTCGGTGCAATAGCATCAGAGTTTCAACCCAGGACTGAATTTGAGAAGAAAATGGCTT 852
| || ||||| ||||||||| | ||||| |||||||||| |||||||| ||||||||| |
Sbjct 710 CCGTTGGTGCTATAGCATCACAATTTCAGCCCAGGACTGGATTTGAGATGAAAATGGCGT 769
Query 853 CTGTACTCAAAGATAACGAGC-TTGGGGAGGCTCACAAAGAAGATGGCGCTAAGCTTCTT 911
|| ||||| | ||||| || | || |||||||||||||||||||||| |||| |||||||
Sbjct 770 CTCTACTCGATGATAATGA-CATTTGGGAGGCTCACAAAGAAGATGGAGCTAGGCTTCTT 828
Query 912 GAATTGAATGAGG----T---GT--CGATGGAAGACCACATCAAGT-ACCGTGACCACAT 961
||||| || |||| | || | |||||||| ||||||||| || || |||| |
Sbjct 829 GAATTCAACGAGGCAAGTTTTGTATCTATGGAAGATCACATCAAGAGAC-GTAACCATGT 887
Query 962 TGCCAAGATGCGGAGCCTGCTATTCCGCCATGAACTGAAAAGTAAACGTATCAAGAAGAT 1021
||| |||||||| ||| |||| ||||| ||| |||||||||||||| |||||||||||
Sbjct 888 TGCGAAGATGCGTAGCATGCTGTTCCGAGTTGACCTGAAAAGTAAACGAATCAAGAAGAT 947
Query 1022 TAAGTCTAAAACTTATCATCGCCTTAAAGGGAAGGACCTGAAGAAATCAGCGA-TGGGAG 1080
|||||||||||||||||||||||||||| || |||||||| ||||| | || | ||||
Sbjct 948 TAAGTCTAAAACTTATCATCGCCTTAAAAACAAAGACCTGAATAAATCGG-GAGTTGGAG 1006
Query 1081 CATTAATGGACCCAGAAATGGCTAAAGAAGAGGCTATTAAGCAGGAGACTAGACGAGT-A 1139
|||| |||||||||| |||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 1007 CATTCATGGACCCAGCAATGGCTAAAGAAGAGGCTAAGAAGCAGGAGGCTAGACGAGTTA 1066
Query 1140 GAGGAACGGATGACTTTGAAGCACAAAAACACAGGAAAATGGGCCAAACGCATGTTAAGC 1199
||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 1067 -AGGAACGTATGACTTTAAAGCACAAAAACACAGGACCATGGGCCAAACGCATGCTAAGG 1125
Query 1200 CGTGGACTGACTGAG-AGATATGATGGAACT-AGGGCAGCTATATCTGAACAACTTCAGA 1257
| |||||||| | || | ||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 1126 CTTGGACTGAAT-AGGAAATACGATGGAACTCAGG-CAGCTATATCTGAACAACTTCAGA 1183
Query 1258 TTAATGCTACTTTGTCCAGAAAGATGAACTCCACGAACGATGGAAGTAGTAGTGATGAGA 1317
|||||||||| ||||||||||||||||||||||| || |||| |||||||||||| |||
Sbjct 1184 TTAATGCTACATTGTCCAGAAAGATGAACTCCACAAAAGATGAAAGTAGTAGTGACGAG- 1242
Query 1318 GCGACGATGAGGAAGAGTTGAGTTGTGGTTCAGATCAGGATACTCCTTCTAAATTGATAG 1377
| | ||| | || | || | | | |||||||||||||||| | ||||| ||||||
Sbjct 1243 GA-A-GATTTG-AA---T-GA-T-G-G-TTCAGATCAGGATACT--T-CTAAACTGATAG 1288
Query 1378 CGAAAGCCAGGGAGAAGACACTGAAAACTATGGAAGATGATGATGTACCCAATTCTGGTC 1437
|| |||| | ||||||||||||||||||| ||||||||||||| || |||| ||||||||
Sbjct 1289 CGGAAGCAAAGGAGAAGACACTGAAAACTTTGGAAGATGATGAAGTCCCCATTTCTGGTC 1348
Query 1438 TTCTTTCATTACCTTTCATGGCTCGTGCTATGAAAAAGAAAAATGAGGAAGCTAATGAAG 1497
|| | |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1349 TTATGTCATTACCTTTCATGGCTCGTGCTGTGAAAAAGAAAAACGAGGAAGCTAAAGAAG 1408
Query 1498 AAGCTAAACGTGCATTTGGGGAGTATAAAGAATTGGAGAATTTTGGTGGAGAAGATAATC 1557
||| |||||||| | ||| |||||||||||| ||| |||| | |||||||| ||| || |
Sbjct 1409 AAGATAAACGTGGACTTGAGGAGTATAAAGAGTTGAAGAACTCTGGTGGAGCAGA-AACC 1467
Query 1558 -CTAAAAAATCCGCTGATGTTAGTGGTAGAAGAGTATTTGGTGCCACCTCTAAAGTCGAA 1616
||||||| ||| || ||||| ||||||||||||||||||| || | | ||
Sbjct 1468 TCTAAAAAGTCCACTAATGTTGGTGGTAGAAGAGTATTTGGGGC-A--------G---AA 1515
Query 1617 GCTCCAAAAGAGTCTAAAAAGGACTCGGACAA-TTTTTATGACAACAGTGATAGT-G--A 1672
||||||||||||||||||||||| || ||||| ||||| ||| | |||||||||| | |
Sbjct 1516 GCTCCAAAAGAGTCTAAAAAGGAATCAGACAACTTTTT-TGATAGCAGTGATAGTAGTGA 1574
Query 1673 CAATGATATGGAAGGTATAGAAAATAATGACCTTGG-GGCTGTTGGAGATACTGCTTCAC 1731
|||||||||||| | || ||||||| || | |||||| ||||| ||||||||
Sbjct 1575 CAATGATATGGA---T---GA---TAATGAC-TTAGAGGCTGTAAAAGATAATGCTTCAC 1624
Query 1732 CTGCTAGAAACACTGGAGCCATAACAGAGACCGAG 1766
|||||||||| ||| |||||| | || ||||||
Sbjct 1625 CTGCTAGAAAAACTAAAGCCATTATGGAAACCGAG 1659
Score = 721 bits (390), Expect = 0.0
Identities = 563/646 (87%), Gaps = 13/646 (2%)
Strand=Plus/Plus
Query 1923 AAGGA-ATCGAGAGATGAAGAAAGTGA--A-GATTCAGAGAGTGAAGCTGAGCAAATGGT 1978
||||| | ||| ||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1672 AAGGAGA-CGAAAGATGAAGAAAGTGATTATGATTCAGAGAGTGAAGCAGAGCAAATGGT 1730
Query 1979 TGATGGGATTTTGACAT-CTGCTTCGAAGGAGACCTATGAAATCCCTTCTCAAGCAGAGC 2037
||||||||||||||||| || ||| ||||| ||||||||||| |||| ||| |||||||
Sbjct 1731 TGATGGGATTTTGACATGTTG-TTCAAAGGAAACCTATGAAATTCCTTGTCAGGCAGAGC 1789
Query 2038 TTATACA-ACGTGCTTTTGCTGGTGATGACGTTGTAGAAGAATTTGAGAAGGATAAGCAA 2096
|| || | |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1790 TTGTA-AGCCGTGCTTTTGCTGGTGATGACGTTGTAGGTGAATTTGACAAGGATAAGCAA 1848
Query 2097 GAAGTTCTAAATCAGGAAGTTCCTGAACCGGAAAAGCCGGTTCTAGTTCCTGGTTGGGGA 2156
|| || ||||||||||||||||||||||| ||||| || |||| ||||||||||||||||
Sbjct 1849 GAGGTACTAAATCAGGAAGTTCCTGAACCCGAAAAACCAGTTCAAGTTCCTGGTTGGGGA 1908
Query 2157 CAATGGACCAATGTCCAAAAGAAGAGAGGTTTACCTTCATGGATGGTTAGAGAACATGAA 2216
|||||||||||| |||||| |||||||||||||| ||| |||||||||||||||| |||
Sbjct 1909 CAATGGACCAATACCCAAAACAAGAGAGGTTTACCATCAAGGATGGTTAGAGAACACGAA 1968
Query 2217 GATGCAAATAAAAAGAGAAAGCTAGATCTCAAAACAAGGAAAGACTAT-CGTCTCAGAAA 2275
||||| || |||| |||| ||| || |||||||| |||||||||| | | ||||||| |
Sbjct 1969 GATGCCAAGAAAACGAGAGAGCAAGCTCTCAAAAAAAGGAAAGACGCTTC-TCTCAGACA 2027
Query 2276 TGTTATCATATCAGAGAAAGTCGATAAAAAGGCTGACAAACTTCATACAACGACTCTACC 2335
||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2028 TGTTATCCTATCAGAAAAAGTCGATAAAAAGGCTGAGAAACTTCATACAACGAGTCTACC 2087
Query 2336 TTTCCCATATACATCTAAGGAAGTTTTCGAACACAGCATGCGCATGCCTATAGGACCCGA 2395
|| ||| || ||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||
Sbjct 2088 TTACCCTTACACATCAAAGGAAGTTTTTGAACATAGTATGCGTATGCCTATTGGACCTGA 2147
Query 2396 GTTTAATCCTGCGACTATTGTTGGAGCTCTCAACCGACCCGAGGTTGTGAAGAAAGCTGG 2455
||||||||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 2148 GTTTAATCCCACAACTATTGTTGGAGATCTAAACCGACCTGAGGTTGTGAAGAAAGCTGG 2207
Query 2456 TGTGATAATTAAACCGGTCAAATTTGAGGAAGT-GAATCCAAACGAGAAAGCAGATGACG 2514
|||| |||||||| ||||| ||||||||||| || ||| || ||||||| ||| ||||
Sbjct 2208 AATGATCATTAAACCTGTCAAGTTTGAGGAAGTAGA-TCCGAAGGAGAAAGTAGAGGACG 2266
Query 2515 AAAACCCTCGAAGCCATcaaaaacaaagacccaaaaagggtagtaa 2560
|| || |||| |||||||| ||||||| ||||||||||||| ||||
Sbjct 2267 AACACGCTCGTAGCCATCAGAAACAAAAACCCAAAAAGGGTCGTAA 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102843661500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5