BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02425.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490324 jgi|Araly1|490324|fgenesh2_kg.6__3458__AT4G02425.1 1269 0.0
> Ahg490324 jgi|Araly1|490324|fgenesh2_kg.6__3458__AT4G02425.1
Length=839
Score = 1269 bits (687), Expect = 0.0
Identities = 799/851 (94%), Gaps = 15/851 (2%)
Strand=Plus/Plus
Query 90 tttttGTGATCTGGAAAGTTGTTACCTTTAACAATGTCTCCGAAACATCTAGAGTCATCA 149
||| |||||||| ||||||| |||||||||||||||||| |||||||| ||| ||||||
Sbjct 1 TTTCTGTGATCTATAAAGTTGGTACCTTTAACAATGTCTCAGAAACATCGAGAATCATCA 60
Query 150 CGAAGCTCTATTGAATCATGCACTTCACAGCTTCTCTCATGGCGACCATTTCACCGCTCC 209
||||| || |||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 CGAAGTTCAATTGAATCTTGCACTTCACAGCTCCTCTCATGGCGCCCATTTCACCGCTCC 120
Query 210 AAAACCCTAGACTCATCTGACCAACCACCGCAGACCAATGGGTTTCACTCCTTTACTCCC 269
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 AAAACCCTAGACTCATCTGACCAACCACCGCAGTCCAATGGGTTTCACTCC---ACTCCC 177
Query 270 AAACGCCCTTGCTTCTCCGATCGATCCACTTCTTTCACCATCGAAGCTATGAGCCGTCTC 329
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 178 AAACGCCCTTGCTTCTCCGATCGATCCACCTCTTTCTCCATCGAAGCTATGAGCCGTCTC 237
Query 330 TCACTCGCCGACGACGACAATGGAGGGAAGACATTATCAGCTTCCAATTACAGCAATAGA 389
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 238 TCACTCGCCGACGACGACAATGGAGGGAAGACGTTATCAGCTTCGAATTACAGCAACAGA 297
Query 390 GGAAGTTTCAGGTTAGTAGCGAGGAAGCGGCGGCGGCGTAATTCGAGATCGGTGTCTGGT 449
|||||| || ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 298 GGAAGTCTCCGGTTAGTAGCGAGGAAGCGACGGCGTCGTAATTCGAGATCGGTGTCTGGT 357
Query 450 CGGAGTAGTGATCGGAGTGGGACTCGGAGATGTTGCTCCATTGGTGCTCATGGGACTTGT 509
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 CGGAGTAGTGATCGGAGTGGGACTCGGAGATGTTGCTCCATTGGAGCTCATGGGACTTGC 417
Query 510 TCGGATTTGCCTTTCGCTGTTGGTACAGATTCAAGTGGAGAGCTTTTTGGTGAAGCGAAT 569
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCCGATTTGCCTTTCGCTGTTGGTACAGATTCAAGTGGAGAGCTTTTTGGTGAAGCGAAT 477
Query 570 TGGGCTTCTGATGTGAGTGAGGCGGCGAGGAATTCACGGAGAGAGCGGCGAGATTCTGGT 629
||||||||||||||||||||||||||||||||||| || ||||| ||| ||
Sbjct 478 TGGGCTTCTGATGTGAGTGAGGCGGCGAGGAATTCGCGTAGAGA---------TTCCGGC 528
Query 630 GGAGAGAAGGAAGCTTCTGGTGGATTTGGATTTGCTAATGGAGTTGATCCAATGGGGAAT 689
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 529 GGAGAGAAGGAAGCTTCTGGTGGATTTGGATTCGCTATTGGAGTTGATCCAATGGGGAAT 588
Query 690 GAATCTGGGTATGGGAGTGAGCCTGGTTACAGAGGTGATGCTGAGTTTGGCTATGGTGAT 749
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 589 GAATCTGGGTATGGGAGTGAACCTGGTTACAGAGGTGATGCTGAGTTTGGTTATGGTGAT 648
Query 750 GAATTTGATGATGAAGAAGAAGATGTCAAGCCATTGTTTTGGGGAGATACAGATTCAACA 809
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 GAATTCGATGATGAAGAAGAAGATGCCAAGCCATTGTTTTGGGGAGATACAGATTCAACA 708
Query 810 ATGGGGATGTCTGGTGAGACGAAATTCTCAGATAGTAAACCTCAATTCAGGTGCCGGCGA 869
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 709 ATGGGGATGTCTGGTGAGACGAAATTCTCAGATACTAAACCTCAATTCAGGTGCCGGCGA 768
Query 870 AGAAGACAACAT---GACTACAAAACTGTTGACTCCATGAGATGAACATAACAAAGACAT 926
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGAAGACAGCATATTGACTACAAAACTGTTGACTCCATGAGATGAACATAACAAAGACAT 828
Query 927 TACTATTCAGT 937
|||||||||||
Sbjct 829 TACTATTCAGT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5