BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02430.2
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327556 jgi|Araly1|327556|fgenesh1_pm.C_scaffold_6002776 1175 0.0
Ahg311385 jgi|Araly1|311385|fgenesh1_pm.C_scaffold_1000165 675 0.0
> Ahg327556 jgi|Araly1|327556|fgenesh1_pm.C_scaffold_6002776
Length=846
Score = 1175 bits (636), Expect = 0.0
Identities = 751/804 (93%), Gaps = 18/804 (2%)
Strand=Plus/Plus
Query 49 ATGAGCAGCCGTTCGAGTAGAACGATTTACGTCGGGAACCTTCCCGGCGATATCCGTGAA 108
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGAGCAGCCGTTCGAGTAGAACAATTTACGTCGGAAACCTTCCCGGCGATATTCGTGAA 60
Query 109 AGAGAAGTTGAAGACTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAGATT 168
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AGAGAAGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAAATT 120
Query 169 CCGCCGAGGCCTCCAGGCTATGCATTCGTCGAGTTTGAGGATGCTCGTGATGCTGATGAT 228
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCGCCGAGGCCTCCTGGCTATGCATTCGTCGAGTTTGAGGATGCTCGGGATGCTGATGAT 180
Query 229 GCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCATTTACGGGTGGAACTAGCT 288
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 GCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCGTTTACGGGTGGAACTAGCT 240
Query 289 CATGGTGGGAGGCGTTCATCACATGATGCACGCGGTAGTTATAgtggtcgtggtcgtggc 348
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 241 CATGGTGGGAGGCGTTCATCACATGATGCACGCGGCAGTTACAGTGGTGGTGGTCGTGGC 300
Query 349 ggtcgtggtggtggtgacggtggtggtcgtgaacgtggACCATCTAGGAGATCAGAGTAC 408
||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 301 GGTCGTGATGGTGTTGACGGTGGTGGTCGTGGGCGTGGACCATCTAGGAGATCCGAGTAC 360
Query 409 CGCGTTGTAGTGTCAGGTTTGCCTTCATCTGCGTCCTGGCAAGACCTCAAGGATCACATG 468
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 CGCGTTGTAGTGTCAGGTTTGCCGTCATCTGCGTCCTGGCAAGACCTCAAGGATCACATG 420
Query 469 CGTAAAGGAGGAGAAGTTTGTTTTTCTCAAGTGTTTCGTGATGGTAGAGGTACAACTGGA 528
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 CGTAAAGGAGGAGAAGTTTGTTTTTCGCAAGTGTTTCGTGATGGTAGAGGTACAACTGGA 480
Query 529 ATTGTAGATTATACCAGCTACGAGGACATGAAATATGCG---------CTCGATGACACA 579
|| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 481 ATAGTAGATTATACCAGCTACGAGGACATGAAATATGCGATAAAAAAGCTCGACGACACA 540
Query 580 GAGTTTCGGAATGCGTTTTCTCATGAATATGTTCGGGTTAGAGAATATGATTCAAGGAGG 639
||||||||||||||||||||||||| |||||||||| | | |||||||||||||||
Sbjct 541 GAGTTTCGGAATGCGTTTTCTCATGGATATGTTCGG---A-A---TATGATTCAAGGAGG 593
Query 640 GATTCGAGGAGCCCCAGCCGTGGAAGATCCTATTCTAAGAGCCGCAGCCGTGGACGGAGT 699
||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||
Sbjct 594 GATTCGAGGAGCCCCAGCCGTGGAAGATCTTATTCTAAGAGCCGCAGCCGTAGTCGCAG- 652
Query 700 CCCAGC-CGTAGTCGTAGCCGCAGCAGAAGCAGGAGCAAGAGCAGAAGTCCAAAGGCTAA 758
|| | || || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCGGGGGCGGAGCCCTAGCCGCAGCAGAAGCAGGAGCAAGAGCAGAAGTCCAAAGGCTAA 712
Query 759 ATCTTTGCGTAGATCGCCTGCAAAATCTACATCGAGATCTCCTCGCTCTCGCTCCCGCTC 818
||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 713 ATCTTCACGTAGATCACCTGCAAAATCTACATCGAGATCTCCTCACTCTCGCTCCCGCTC 772
Query 819 TAAGTCGAGGTCACTGTCTCCACG 842
||||||||||||||||||||||||
Sbjct 773 TAAGTCGAGGTCACTGTCTCCACG 796
> Ahg311385 jgi|Araly1|311385|fgenesh1_pm.C_scaffold_1000165
Length=894
Score = 675 bits (365), Expect = 0.0
Identities = 713/872 (82%), Gaps = 60/872 (7%)
Strand=Plus/Plus
Query 49 ATGAGCAGCCGTTCGAGTAGAA-CGATTTACGTCGGGAACCTTCCCGGCGATATCCGTGA 107
|||||||||||||||||||||| || | ||||| || |||||||| ||||||||||||||
Sbjct 1 ATGAGCAGCCGTTCGAGTAGAACCG-TGTACGTTGGAAACCTTCCTGGCGATATCCGTGA 59
Query 108 AAGAGAAGTTGAAGACTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAGAT 167
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 60 GAGAGAGGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGT 119
Query 168 TCCGCCGAGGCCTCCAGGCTATGCATTCGTCGAGTTTGAGGATGCTCGTGATGCTGATGA 227
|| || |||||||| || ||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 120 CCCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGA 179
Query 228 TGCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCATTTACGGGTGGAACTAGC 287
||| ||| | || || ||||| ||||||||||||||||||| ||| ||||||||| | ||
Sbjct 180 TGCTATTCAAGGTCGGGATGGCTATGACTTTGATGGGCATCGTTTGCGGGTGGAATTGGC 239
Query 288 TCATGGTGGGAGGCGTTCATCACATGATGC-ACGCGGTAGTTAT-Agtggtcgtggtcgt 345
||||||||||||||||||||| ||||| | | | ||||||| | | |||| |||| |||
Sbjct 240 GCATGGTGGGAGGCGTTCATCAGATGATACTAGG-GGTAGTT-TCAATGGTGGTGGCCGT 297
Query 346 ggcggt---cgtggtggtggtgacgg---tggtggtcgtga-a--cgtggACCATCTAGG 396
|| ||| ||||| | ||||| || ||||| | ||| | ||||| |||||||||
Sbjct 298 GGTGGTGGACGTGGCCGCGGTGATGGCCGTGGTGATGGTGGTAGTCGTGGCCCATCTAGG 357
Query 397 AGATCAGAGTACCGCGTTGTAGTGTCAGGTTTGCCTTCATCTGCGTCCTGGCAAGACCTC 456
|||||||||| || ||| | || |||| |||||||| ||||| || |||||||| |||
Sbjct 358 AGATCAGAGTTTCGTGTTCTGGTCACAGGCTTGCCTTCTTCTGCTTCTTGGCAAGATCTC 417
Query 457 AAGGATCACATGCGTAAAGGAGGAGAAGTTTGTTTTTCTCAAGTGTTTCGTGATGGTAGA 516
||||||||||||||||||||||| || || ||||| || ||||||| ||||||||||||
Sbjct 418 AAGGATCACATGCGTAAAGGAGGGGACGTCTGTTTCTCGCAAGTGTACCGTGATGGTAGA 477
Query 517 GGTACAACTGGAATTGTAGATTATACCAGCTACGAGGACATGAAATATGCG--------- 567
|||||||||||| |||| ||||| ||| |||| ||||||||||| ||||||
Sbjct 478 GGTACAACTGGAGTTGTCGATTACACCTGCTATGAGGACATGAAGTATGCGGTGAAAAAG 537
Query 568 CTCGATGACACAGAGTTTCGGAATGCGTTTTCTCATGAATATGTTCGGGTTAGAGAATAT 627
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 538 CTCGACGACACAGAGTTTCGAAATGCGTTTTCTCATGGATATGTTCGGGTTAGAGAATAC 597
Query 628 GATTCAAGGAGGGATTCGAGGAGCCCCAGCCGTGGAAGATCCTATTCTA--AG----AGC 681
|||||||||| |||||| ||||| || ||||| |||||||||||||||| || |||
Sbjct 598 GATTCAAGGAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTAGGAGTCGCAGC 657
Query 682 CGCAGCCG------TGGACGGAG-TC---CC-A-GCCGTAGTC-GTAGCCGCAGCAGAAG 728
|||||||| ||| || || | || | || | || | | ||| | ||||||||
Sbjct 658 CGCAGCCGCAGCCGTGGGCGAAGCTTGAGCCGAAGCAGGAG-CAGGAGCAGGAGCAGAAG 716
Query 729 CAGGAGCAAGAGCAG-A--AG---TCCAAAGGCTAAA-TCTTTGCGTAGATCGCCTGCAA 781
|||||||| |||||| | || ||||||||| ||| |||| ||||| || |||||||
Sbjct 717 CAGGAGCAGGAGCAGGAGCAGGAGTCCAAAGGC-AAAGTCTTCACGTAGGTCCCCTGCAA 775
Query 782 AATCTACATCGAGATCTCCTCGCTCTCGCTCCCGCTCTAAGTCGAGGTCACTGTCTCCAC 841
|||||||||| ||||||||| || | | | | |||| ||||| ||||||| |||||||
Sbjct 776 AATCTACATCAAGATCTCCTGGC-C-C-C-C--GCTCGAAGTCAAGGTCACCGTCTCCAA 829
Query 842 GAGGATGGGTAACAGTGGAGAGACATTGGATC 873
|| ||||| |||||||||||| |||||||||
Sbjct 830 GAAGATGGATAACAGTGGAGA--CATTGGATC 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56640194315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5