BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02450.1 Length=1088 Score E Sequences producing significant alignments: (Bits) Value Ahg895753 jgi|Araly1|895753|Al_scaffold_0006_3749 728 0.0 > Ahg895753 jgi|Araly1|895753|Al_scaffold_0006_3749 Length=789 Score = 728 bits (394), Expect = 0.0 Identities = 445/470 (95%), Gaps = 2/470 (0%) Strand=Plus/Plus Query 129 ATGAGTCGTCATCCTGAAGTGAAGTGGGCTGAGACTACCGAGAAGATTTTCCTCACTGTA 188 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGAGTCGTCATCCTGAAGTGAAGTGGGCTGAGACTACCGAGAAGATTTTTCTCACTGTA 60 Query 189 GTATTAGCTGATACTAAGGATACCAAGGTTAACCTAGACCCAGAAGGAGTCTTTGATTTC 248 ||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 61 GTATTGGCAGATACTAAGGATACCAAGGTTAATCTAGATCCAGAAGGAGTGTTTGATTTC 120 Query 249 TCTGCGAAAGTTGGTCCAGAAAACCACGTTTATGAGCTCAAACTGGAACTTGC-CGATAA 307 |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct 121 TCTGCGAAAGTTGGTCCAGAAAACCACGTTTATGAGCTCAAACTCGAACTT-CACGATAA 179 Query 308 AGTCAATGTTGAGGAAAGCAAAATCAACATTGGAGAGAGAAGCATATTCTGCATAATTGA 367 ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct 180 AGTCAATGTTGAGGAAAGCAAAATCAACATTGGTGAAAGAAGCATATTCTGCATAATAGA 239 Query 368 GAAAGCAGAGCCGGAAAGGTGGAATAAGCTACTCCGTGTGAAGAAGCCCCCACACTATGT 427 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 GAAAGCAGAGCCAGAAAGGTGGAATAAGCTACTCCGTGTGAAGAAGCCACCACACTATGT 299 Query 428 CAAGGTTGATTGGGACAAGTGGGTTGATGAGGACGATGAAGGCAGTGCTGGTGCCGCAGA 487 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CAAGGTGGATTGGGACAAGTGGGTTGATGAGGACGATGAAGGCAGTGCTGGTGCCGCAGA 359 Query 488 Tatggatatggcaggaatggaaggaatgggaggaatgggaggcatgggcggcatgggagg 547 ||||||||||| |||||||||||||||||| |||||||| || |||||||| ||||| || Sbjct 360 TATGGATATGGGAGGAATGGAAGGAATGGGCGGAATGGGCGGAATGGGCGGAATGGGCGG 419 Query 548 aatgggtggaatgggaggaatgggtggaatgggaggaatggaaggaatgg 597 |||||| ||||||||||||||||| |||||||| ||||||| |||||||| Sbjct 420 AATGGGAGGAATGGGAGGAATGGGAGGAATGGGTGGAATGGGAGGAATGG 469 Score = 327 bits (177), Expect = 8e-89 Identities = 316/379 (83%), Gaps = 25/379 (7%) Strand=Plus/Plus Query 497 ggcaggaatggaaggaatgggaggaatgggaggcatgggcggcatgggaggaatgggtgg 556 ||| ||||||| ||||||||||||||||||||| ||||| || |||||||||||||| || Sbjct 415 GGC-GGAATGGGAGGAATGGGAGGAATGGGAGGAATGGGTGGAATGGGAGGAATGGGAGG 473 Query 557 aatgggaggaatgggtggaatgggaggaatggaaggaatgga-tt--t-ctcg-aaatta 611 ||||| |||||||| | | || | | || ||| || || | || | || Sbjct 474 AATGGAAGGAATGGAT-TTCTCGGTTTCTTTG-AGAAAT-GACTTCATACTTGTTCCTTG 530 Query 612 atgggtg--g-----aatgggtggaatgggtggaatgggCGGACTCGAAGGGCTCGGTGG 664 || ||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 ATTCGTGCAGAAACTAATGGGTGGAATGGGTGGAATGGGCGGACTCGAAGGGCTCGGTGG 590 Query 665 AATGGGAGGCATGGGTGGAATGGGAGGCATGGGTGG--T-------ATGGGAGGCATGGA 715 |||||| || ||||| |||||||||||||||||||| | |||||||||||||| Sbjct 591 AATGGGTGGTATGGGAGGAATGGGAGGCATGGGTGGTATGGGAGGAATGGGAGGCATGGA 650 Query 716 AGAGTTTGAAGACAGTGATGATGAAGAAGAGACAGCAAAATCAGGAGACAAGAAGGATGA 775 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 651 AGAGTTTGAAGACAGTGATGATGAAGAAGAAACAGCAAAATCAGGAGACAAGAAGGATGA 710 Query 776 TGCCGTTAAGGAGGAAGGTCTTGCGACAGAGAAGGCACCAGCGGCAGAAGAAACAACATC 835 || ||||||||||||| || ||| |||||||||||||||| ||||||||||||||||| Sbjct 711 TGGTGTTAAGGAGGAAGCTCCCGCGGCAGAGAAGGCACCAGCAGCAGAAGAAACAACATC 770 Query 836 TGTTAAGGAAGACAAGTGA 854 ||||| ||||| ||||||| Sbjct 771 TGTTATGGAAGGCAAGTGA 789 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40524660771 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5