BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02450.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895753 jgi|Araly1|895753|Al_scaffold_0006_3749 728 0.0
> Ahg895753 jgi|Araly1|895753|Al_scaffold_0006_3749
Length=789
Score = 728 bits (394), Expect = 0.0
Identities = 445/470 (95%), Gaps = 2/470 (0%)
Strand=Plus/Plus
Query 129 ATGAGTCGTCATCCTGAAGTGAAGTGGGCTGAGACTACCGAGAAGATTTTCCTCACTGTA 188
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAGTCGTCATCCTGAAGTGAAGTGGGCTGAGACTACCGAGAAGATTTTTCTCACTGTA 60
Query 189 GTATTAGCTGATACTAAGGATACCAAGGTTAACCTAGACCCAGAAGGAGTCTTTGATTTC 248
||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 61 GTATTGGCAGATACTAAGGATACCAAGGTTAATCTAGATCCAGAAGGAGTGTTTGATTTC 120
Query 249 TCTGCGAAAGTTGGTCCAGAAAACCACGTTTATGAGCTCAAACTGGAACTTGC-CGATAA 307
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 121 TCTGCGAAAGTTGGTCCAGAAAACCACGTTTATGAGCTCAAACTCGAACTT-CACGATAA 179
Query 308 AGTCAATGTTGAGGAAAGCAAAATCAACATTGGAGAGAGAAGCATATTCTGCATAATTGA 367
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 180 AGTCAATGTTGAGGAAAGCAAAATCAACATTGGTGAAAGAAGCATATTCTGCATAATAGA 239
Query 368 GAAAGCAGAGCCGGAAAGGTGGAATAAGCTACTCCGTGTGAAGAAGCCCCCACACTATGT 427
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 GAAAGCAGAGCCAGAAAGGTGGAATAAGCTACTCCGTGTGAAGAAGCCACCACACTATGT 299
Query 428 CAAGGTTGATTGGGACAAGTGGGTTGATGAGGACGATGAAGGCAGTGCTGGTGCCGCAGA 487
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAGGTGGATTGGGACAAGTGGGTTGATGAGGACGATGAAGGCAGTGCTGGTGCCGCAGA 359
Query 488 Tatggatatggcaggaatggaaggaatgggaggaatgggaggcatgggcggcatgggagg 547
||||||||||| |||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 360 TATGGATATGGGAGGAATGGAAGGAATGGGCGGAATGGGCGGAATGGGCGGAATGGGCGG 419
Query 548 aatgggtggaatgggaggaatgggtggaatgggaggaatggaaggaatgg 597
|||||| ||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 420 AATGGGAGGAATGGGAGGAATGGGAGGAATGGGTGGAATGGGAGGAATGG 469
Score = 327 bits (177), Expect = 8e-89
Identities = 316/379 (83%), Gaps = 25/379 (7%)
Strand=Plus/Plus
Query 497 ggcaggaatggaaggaatgggaggaatgggaggcatgggcggcatgggaggaatgggtgg 556
||| ||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 415 GGC-GGAATGGGAGGAATGGGAGGAATGGGAGGAATGGGTGGAATGGGAGGAATGGGAGG 473
Query 557 aatgggaggaatgggtggaatgggaggaatggaaggaatgga-tt--t-ctcg-aaatta 611
||||| |||||||| | | || | | || ||| || || | || | ||
Sbjct 474 AATGGAAGGAATGGAT-TTCTCGGTTTCTTTG-AGAAAT-GACTTCATACTTGTTCCTTG 530
Query 612 atgggtg--g-----aatgggtggaatgggtggaatgggCGGACTCGAAGGGCTCGGTGG 664
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATTCGTGCAGAAACTAATGGGTGGAATGGGTGGAATGGGCGGACTCGAAGGGCTCGGTGG 590
Query 665 AATGGGAGGCATGGGTGGAATGGGAGGCATGGGTGG--T-------ATGGGAGGCATGGA 715
|||||| || ||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 591 AATGGGTGGTATGGGAGGAATGGGAGGCATGGGTGGTATGGGAGGAATGGGAGGCATGGA 650
Query 716 AGAGTTTGAAGACAGTGATGATGAAGAAGAGACAGCAAAATCAGGAGACAAGAAGGATGA 775
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 651 AGAGTTTGAAGACAGTGATGATGAAGAAGAAACAGCAAAATCAGGAGACAAGAAGGATGA 710
Query 776 TGCCGTTAAGGAGGAAGGTCTTGCGACAGAGAAGGCACCAGCGGCAGAAGAAACAACATC 835
|| ||||||||||||| || ||| |||||||||||||||| |||||||||||||||||
Sbjct 711 TGGTGTTAAGGAGGAAGCTCCCGCGGCAGAGAAGGCACCAGCAGCAGAAGAAACAACATC 770
Query 836 TGTTAAGGAAGACAAGTGA 854
||||| ||||| |||||||
Sbjct 771 TGTTATGGAAGGCAAGTGA 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5