BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02460.1
Length=3154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490319 jgi|Araly1|490319|fgenesh2_kg.6__3453__AT4G02460.1 4407 0.0
> Ahg490319 jgi|Araly1|490319|fgenesh2_kg.6__3453__AT4G02460.1
Length=3065
Score = 4407 bits (2386), Expect = 0.0
Identities = 2794/2986 (94%), Gaps = 48/2986 (2%)
Strand=Plus/Plus
Query 155 CAGAGTACGGTGGTGTTGATTCGATTGAGGAGATTCATCTGTTTATAGGGTTTAGCAAAT 214
|||| ||| |||||||||||||||||||||| ||| | | ||||||| ||||| | ||||
Sbjct 102 CAGATTACTGTGGTGTTGATTCGATTGAGGATATTAACCGGTTTATATGGTTTTGAAAAT 161
Query 215 GCAAGGAGATTCT-TCTCCGTCTCCGACGACTACTAGCTCTCCTTTGATAAGACCTATAA 273
||||||||||| | |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 162 GCAAGGAGATT-TGTCTCCGTCTCCGACGATTACTAGCTCTCCTTTGATAAGACCGATAA 220
Query 274 ACAGAAACGTAATTCACAGAATCTGTTCCGGTCAAGTCATCTTAGACCTCTCTTCGGCCG 333
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 221 ACAGAAACGTAATTCACAGAATCTGCTCCGGTCAAGTCATCTTAGACCTCTCTTCTGCCG 280
Query 334 TCAAGGAGCTTGTCGAGAATAGTCTCGACGCCGGCGCCACCAGTATAGAGATTAACCTCC 393
||||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 281 TCAAGGAGCTTGTGGAGAACAGTCTCGACGCCGGAGCTACCAGTATAGAGATCAACCTCC 340
Query 394 GAGACTACGGCGAAGACTATTTTCAGGTCATTGACAATGGTTGTGGCATTTCCCCAACCA 453
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 341 GAGACTACGGCGAAGACTACTTTCAGGTCATTGACAATGGTTGTGGCATTTCCCCTACCA 400
Query 454 ATTTCAAGGTTCTTGCACTTAAGCATCATACTTCTAAATTAGAGGATTTCACAGATCTTT 513
||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 401 ATTTCAAGGTTCTAGCACTCAAGCATCATACTTCTAAATTGGAGGATTTCACAGATCTTC 460
Query 514 TGAATTTGACTACTTATGGTTTTAGAGGAGAAGCCTTGAGCTCTCTCTGTGCATTGGGAA 573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 461 TGAATTTGACTACTTATGGTTTTAGAGGAGAAGCCTTGAGCTCTCTCTGTGCATTGGGCA 520
Query 574 ATCTCACTGTGGAAACAAGAACAAAGAATGAGCCAGTTGCTACGCTCTTGACGTTTGATC 633
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 ATCTGACGGTGGAAACAAGAACAAAGAATGAGCCAGTTGCTACGCTCTTGACGTTTGATC 580
Query 634 ATTCTGGTTTGCTTACTGCTGAAAAGAAGACTGCTCGCCAAATTGGTACCACTGTCACTG 693
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 581 ATTCTGGTTTGCTTACTGCTGAAAAGAAGACTGCACGCCAAATTGGTACCACTGTCACTG 640
Query 694 TTAGGAAGTTGTTCTCTAATTTACCTGTACGAAGCAAAGAGTTTAAGCGGAATATACGCA 753
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 641 TTAGGAAGTTGTTCTCTAATTTACCTGTACGAAGCAAAGAGTTTAAGCGCAATATACGCA 700
Query 754 AAGAATATGGGAAGCTTGTATCTTTATTGAACGCATATGCGCTTATTGCGAAAGGAGTGC 813
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 701 AAGAATATGGGAAGCTTGTATCTTTGTTGAACGCATATGCACTTATTGCGAAAGGAGTGC 760
Query 814 GGTTTGTCTGCTCTAACACGACTGGGAAAAACCCAAAGTCTGTTGTGCTGAACACACAAG 873
||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||
Sbjct 761 GGTTTGTCTGCTCTAACACGAGTGGGAAAAATCCTAAGTCTATTGTGCTGAACACACAAG 820
Query 874 GGAGGGGTTCACTTAAAGATAATATCATAACAGTTTTCGGCATTAGTACCTTTACAAGTC 933
||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||
Sbjct 821 GGAGGGGTTCACTTAAAGACAATATCATAACAGTTTTCGGCATGAACACCTTTACAACTC 880
Query 934 TACAGCCTGTAAGTATATGTGTATCAGAAGATTGTAGAGTTGAAGGGTTTCTTTCCAAGC 993
|||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 881 TACAGCCTGTTGGTATGTGTATATCAGAAGATTGTAGAGTTGAAGGGTTTCTTTCCAAGC 940
Query 994 CTGGACAGGGTACTGGACGCAATTTAGCAGATCGACAGTATTTCTTTATAAATGGTCGGC 1053
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 941 CTGGACAGGGTACTGGACGCAATTTGGCAGATCGACAGTATTTCTTTATAAATGGTCGGC 1000
Query 1054 CTGTAGATATGCCAAAAGTCAGCAAGTTGGTGAATGAGTTATATAAAGATACAAGTTCTC 1113
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1001 CTGTTGAAATGCCAAAAGTCAGCAAATTGGTGAATGAGTTATATAAAGATACAAGTTCTC 1060
Query 1114 GGAAATATCCAGTTACCATTCTGGATTTTATTGTGCCTGGTGGAGCATGTGATTTGAATG 1173
|||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1061 GGAAATATCCAGTTGCCATTCTGGATTTTGTTGTGCCAGGTGGAGCATGTGATTTGAATG 1120
Query 1174 TCACGCCCGATAAAAGAAAGGTGTTCTTTTCTGACGAGACTTCTGTTATCGGTTCTTTGA 1233
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 1121 TCACTCCCGATAAAAGAAAGGTGTTCTTTTCTGATGAGAATTCTGTTATCGGTTCTCTGA 1180
Query 1234 GGGAAGGTCTGAACGAGATATATTCCTCCAGTAATGCGTCTTATATTGTTAATAGGTTCG 1293
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1181 GGGAAGGTCTGAACGAGATATATTCCTCTAGTAATGCGTCTTACATTGTTAATAGGTTTG 1240
Query 1294 AGGAGAATTCGGAGCAACCAGATAAGGCTGGAGTTTCGTCGTTTCAGAAGAAATCAAATC 1353
|||||||||| |||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 1241 AGGAGAATTCTGAGCAACCAGATAAGGCTGGAGTTTCATCTTTTCAGGAGAAATCAAATC 1300
Query 1354 TTTTGTCAGAAGGGATAGTTCTGGATGTCAGTTCTAAAACAAGACTAGGGGAAGCTATTG 1413
|| ||||| ||| || ||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1301 TTATGTCAAAAGAAATTGTTCTGGATGTCATTTCTAGAACAAGACAAGGGGAAGCTATTG 1360
Query 1414 -AGAAAGAAAATCC-ATCCTTAAGGGAGGTTGAAATTGATAATAGTTCGCCAATGGAGAA 1471
|| ||||| || ||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 1361 CAG-GGGAAAA-CCAATCCTCAATGGAGGCTGAGATTGATAATAGTTCGCCAATGGAGAA 1418
Query 1472 GTTTAAGTTTGAGATCAAGGCATGTGGGACGAAGAAAGGGGAAGGTTCTTTATCAGTCC- 1530
|||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1419 GTTTAAGTTTGACATCAAGGCACGTGGGACTAAGAAAGGGGAAGGTTCTTTATCAGTCCA 1478
Query 1531 --A--TG------A-TGTAACTCACCTTGACAAGACACCTAGCAAAGGTTTGCCTCAGTT 1579
| || | ||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 1479 TGATGTGTCCCTAACTGTAACTCACCTTGACAAGGCAACTAGCAAAGGTTTGCCTCACTT 1538
Query 1580 AAATGTGACT-GAGAAAGTTACTGATGCAAGTAAAGACTTGAGCAGCCGCTCTAGCTTTG 1638
|||||||| | |||||||| || ||||||||||||||||| |||| ||||||| ||||
Sbjct 1539 AAATGTGA-TGGAGAAAGTCACCAATGCAAGTAAAGACTTGGGCAGTCGCTCTACCTTTT 1597
Query 1639 CCCAGTCAACTTTGAATACTTTTGTTACCATGGGAAAAAGAAAACATGAAAACATAAGCA 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 CCCAGTCAACTTTGAATACTTTTGTTACCATGGGAAAAAGAAAACATGAAAACATAAGCA 1657
Query 1699 CCATCCTCTCTGAAACACCTGTCCTCAGAAACCAAACTTCTAGTTATCGTGTGGAGAAAA 1758
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1658 CCATCCTCTCTGAAGTACCTGTTCTCAGAAACCAAACTTCTAGTTATCGTGTGGAGAAAA 1717
Query 1759 GCAAATTTGAAGTTCGTGCCTTAGCTTCAAGGTGTCTCGTGGAAGGCGATCAACTTGATG 1818
||||||||||||||||||| || |||||||| ||||| |||||||||||||| | ||||
Sbjct 1718 GCAAATTTGAAGTTCGTGCTTTGGCTTCAAGATGTCTTATGGAAGGCGATCAAGTAGATG 1777
Query 1819 ATATGGTCATCTCAAAGGAAGATATGACACCAAGCGAAA-GAGATTCTGAACTAGGCAAT 1877
||||| |||||| ||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1778 GTATGGACATCTCGAAGGAAGATATGACACCAAACGAAATG-GATTCTGAACTAGGCAAT 1836
Query 1878 CGGATTTCTCCTGGAACACAAGCTGATAATGTTGAAAGACATGAGAGAGAACATGAAAAG 1937
| |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 1837 CAGATTGCTCCTGGAACACAAACTGATAATACTGAAAGACATGAAAGAGAACATGAAAAG 1896
Query 1938 CCTATAAGGTTTGAAGAACCAACATCAGATAACACACTCACCAAGGGGGATGTGGAAAGG 1997
|||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1897 CCTATATGTTTTGAAGAACCAACATCAGATAACACAATCACCAAGGGGGATGTGGAAAGA 1956
Query 1998 GTTTCAGAGGACAATCCACGGTGCAGTCAGCCACTGCGATCTGTGGCCACAGTGCTGGAT 2057
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 ATTTCGGAGGACAATCCAGGGTGCAGTCAGCCACTGCGATCTGTGGCCACAGTGCTGGAC 2016
Query 2058 TCCCCAGCTCAGTCAACCGGTCCTAAAATGTTTTCCACATTAGAATTTAGTTTCCAAAAC 2117
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2017 TCCCCAGCTCAGTCAACCGGTCCAAAAATGTTTTCCACATTAGAATTTAGTTTCCAAAAC 2076
Query 2118 CTCA-GGACAAGGAGGTTAGAGAGGCTGTCGAGATTGCAGTCCACAGGTTATGTATCTAA 2176
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 CTCAGGGA-AAGGAGGTTAGAGAGGCTGTCGAGATTGCAGTCCACAGGTTATGTATCTAA 2135
Query 2177 ATGTATGAATACGCCACAGCCTAAAAAGTGCTTTGCCGCTGCAACATTAGAGTTATCTCA 2236
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2136 ATGTATGAATACGCCACGGCCTAAAAAGTGCTTTGCTGCTGCAACATTAGAGTTATCTCA 2195
Query 2237 ACCGGATGATGAAGAGCGAAAAGCAAGGGCTTTAGCTGCAGCTACTTCTGAGCTGGAAAG 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 ACCGGATGATGAAGAGCGAAAAGCAAGGGCTTTAGCTGCAGCTACTTCTGAGCTGGAAAG 2255
Query 2297 GCTTTTTCGAAAAGAGGATTTCAGGAGAATGCAGGTACTCGGGCAATTCAATCTTGGGTT 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 GCTTTTTCGAAAAGAGGATTTCAGGAGAATGCAGGTACTCGGGCAATTCAATCTTGGGTT 2315
Query 2357 CATCATTGCAAAATTGGAGCGAGATCTGTTCATTGTGGATCAGCATGCAGCTGATGAGAA 2416
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2316 CATCATTGCAAAATTGGAGCGAGATCTGTTCATTGTGGATCAGCATGCAGCCGATGAGAA 2375
Query 2417 ATTCAACTTCGAACATTTAGCAAGGTCAACTGTCCTGAACCAGCAACCCTTACTCCAGCC 2476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2376 ATTCAACTTCGAACATTTAGCAAGGTCAACTGTCCTGAACCAGCAACCCTTACTCCAGCC 2435
Query 2477 TTTGAACTTGGAACTCTCTCCAGAAGAAGAAGTAACTGTGTTAATGCACATGGATATTAT 2536
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2436 TTTGAACTTGGAGCTCTCTCCAGAAGAAGAAGTCACTGTGTTAATGCACATGGATATTAT 2495
Query 2537 CAGGGAAAATGGCTTTCTTCTAGAGGAGAATCCAAGTGCTCCTCCCGGAAAACACTTTAG 2596
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 CAGGGAAAATGGATTTATTCTAGAGGAGAATCCAAGTGCTCCTCCCGGAAAACACTTTAG 2555
Query 2597 ACTACGAGCCATTCCTTATAGCAAGAATATCACCTTTGGAGTCGAAGATCTTAAAGACCT 2656
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2556 ACTACGAGCCGTTCCTTATAGCAAGAATATCACCTTTGGGGTCGAAGATCTTAAAGACCT 2615
Query 2657 GATCTCAACTCTAGGAGATAACCATGGGGAATGTTCGGTTGCT-AGTAGCTACAAAACCA 2715
|||||||||||||||||||||||| || || ||||||| || | ||||||||||||||||
Sbjct 2616 GATCTCAACTCTAGGAGATAACCACGGTGAGTGTTCGGGTG-TGAGTAGCTACAAAACCA 2674
Query 2716 GCAAAACAGATTCGATTTGTCCATCACGAGTCCGTGCAATGCTAGCATCCCGAGCATGCA 2775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2675 GCAAAACAGATTCGATTTGTCCATCACGAGTCCGTGCAATGCTAGCATCCCGAGCATGTA 2734
Query 2776 GATCATCTGTGATGATCGGAGATCCACTCAGAAAAAACGAAATGCAGAAGATAGTAGAAC 2835
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2735 GATCATCCGTGATGATCGGAGATCCACTTAGAAAAAACGAAATGCAGAAGATAGTAGAAC 2794
Query 2836 ACTTGGCAGATCTCGAATCTCCTTGGAATTGCCCACACGGACGACCAACAATGCGTCATC 2895
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 2795 ACTTGGCAGATCTCGAATCTCCTTGGAACTGCCCGCACGGACGACCAACGATGCGGCATC 2854
Query 2896 TTGTGGACTTGACAACTTTACTCACATTACCTGATGACGACAATGTCAatgatgatgatg 2955
|||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 2855 TTGTGGACTTGACAACTTTACTCACACTACCTGATGACGACAATG--A-TGATGATGATG 2911
Query 2956 atgatgatgCAACCATCTCATTGGCATGAACACTCAAAA-GTCTTAACGTATTTAGATGT 3014
|||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 2912 ---------CAACCATCTCATTGGCATGAAC--TAAAAAAGTCTTAACGTATTTAGATGT 2960
Query 3015 GAGAATCCTTA-AGATTAACATTGAGGAACACTCGGTTATAACTA-CAATCGTAAATGTA 3072
||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 2961 GAGAATCCTTAGAG-TTAACATTGAGGAACACTCGGTCATAACTAACAATCGTAAATTTA 3019
Query 3073 AATTGT---C-TTAGTCTATATGATCTTTTTGGTCACAACAGGTAA 3114
| |||| | ||||||||||||||||| |||||||||||||||||
Sbjct 3020 ATTTGTTTGCCTTAGTCTATATGATCTTCTTGGTCACAACAGGTAA 3065
Score = 95.3 bits (51), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 72 TTGTCTCACCTTCGATTTTGGCGGCAAAACATAAACCCTAAGGGTTTtctcactctc 128
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 46 TTGTCTCACCTTCGATTTTGGCGGCAAAACATAAACCCTAAGGGCTTTCGCACTCTC 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119146286360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5