BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02465.1

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895751 jgi|Araly1|895751|Al_scaffold_0006_3747                    278    3e-74


> Ahg895751 jgi|Araly1|895751|Al_scaffold_0006_3747
Length=414

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 181/196 (92%), Gaps = 1/196 (1%)
 Strand=Plus/Plus

Query  219  TAATTGCTGCTTTGCTAAGTTTGGCGGAGTTGGAATTTTTATGGCCGAACAAGTTTCTTC  278
            ||| |||||| ||| || ||||||||||||||||| |||||||||| |||||||||||||
Sbjct  218  TAAGTGCTGCCTTGGTATGTTTGGCGGAGTTGGAA-TTTTATGGCCCAACAAGTTTCTTC  276

Query  279  ATCAAAGTTATTCTGGAGAAGAGATATGCAATGGCGTATCGGGCGATTGATGCGGTTACC  338
            || |||||||||||||||||||||||||||||||||||||||||| |||||||||| || 
Sbjct  277  ATGAAAGTTATTCTGGAGAAGAGATATGCAATGGCGTATCGGGCGGTTGATGCGGTCACT  336

Query  339  ACTCACTTCTTTAGATTTCATAAGGAGACGAATGTTATACCCGTCATTTGGCACCAAACA  398
             |||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct  337  GCTCACTTCTTGAGATTTCATAAGGAGACGAAAGTTATGCCTGTCATTTGGCACCAAACA  396

Query  399  CTTCTTGCCTTTGTGC  414
            ||||||||||||||||
Sbjct  397  CTTCTTGCCTTTGTGC  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15338546778


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5