BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02485.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490317 jgi|Araly1|490317|fgenesh2_kg.6__3451__AT4G02485.1 1083 0.0
> Ahg490317 jgi|Araly1|490317|fgenesh2_kg.6__3451__AT4G02485.1
Length=754
Score = 1083 bits (586), Expect = 0.0
Identities = 683/728 (94%), Gaps = 13/728 (2%)
Strand=Plus/Plus
Query 5 aaaTAAAATAATGGACGAAGAAGCAGAGAATTTGAGAGCAGCTTTTGGCGATTCATCGGA 64
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAATAAAATAATGGAGGATGAAGCAGAGAATTTGAGAGCAGCTTTTGGCGATTCATCGGA 61
Query 65 TGATGAAGATATCGCAGATCGGCCGGGAAAAGAAACCATAGGGATCGGAGATTCGGCGGT 124
|||| | | |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 62 TGAT---G--A----AGATCGGCCGGGAAAAGAAACCATAGGGATCGGAGAATCGACGGT 112
Query 125 ATGGGAGAGAGTGGAGGAGATAAATGGTTTATGGCTCTATAGAAACTTTCTCTCTATTGC 184
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 113 ATGGGAGCGAGTGGAGGAGATAAATGGTTTATGGCTCTGTAGAAACTTTCTCTCTATTGC 172
Query 185 TCATCAGTCTCATTTACTCTCCGCCATTCTAAACGAAGGTTGGTTCGTTGAAGAATCTAT 244
|||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 173 TCATCAGTCTGATTTGCTCTCCGCGATTCTAAACGAAGGTTGGTTCGTTGAAGAATCTAT 232
Query 245 TAACCAGGCGATGAGATTTGGTGATCTCCCTTCATGGGCAACAGAACTATCTGATCTCAT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TAACCAGGCGATGAGATTTGGTGATCTCCCTTCATGGGCAACAGAACTATCTGATCTCAT 292
Query 305 ACGCGAGACACTGGAATCTGTTGATCTTCCGGTCTTGTCTGCTGATTTACTCTGGAGAGA 364
|||| |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 293 ACGCCAGACTGTGGAATCTGTTGATCTTCCGGTGTTGTCTGCTGATTTACTGTGGAGAGA 352
Query 365 ACCTCTGTTCGACCAGCTCATTGTCAATTTGTACCAACCAGGTGAGGGAATTTGTGCACA 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ACCTCTGTTTGACCAGCTCATTGTCAATTTGTACCAACCAGGTGAGGGAATTTGTGCACA 412
Query 425 TGTTGATCTGCTGCGTTTTGAAGATGGGATTGCCATCGTCTCTCTGGAGTCACCTTGCGT 484
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 413 TGTTGATCTGCTGCGTTTTGAAGATGGAATTGCCATTGTCTCTCTGGAGTCCCCTTGCGT 472
Query 485 GATGCGGTTCAGTCCCGCAGAAAAG-AACGAATATGAAGCTGTGGATGTTTTGCTGAACC 543
||||||||||||||||||||||||| || ||| ||||| ||||||| ||||| ||| ||
Sbjct 473 GATGCGGTTCAGTCCCGCAGAAAAGGAA-GAAGATGAATATGTGGATATTTTGTTGAGCC 531
Query 544 CGGGATCTCTCATTCTCATGTCTGGAGAAGCTCGGTATCGATGGAAACACGAGATTAATC 603
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 532 CAGGATCTCTCATTCTCATGTCTGGAGTAGCTCGGTATCGATGGAAACACGAGATTAATC 591
Query 604 GAAAGCAGAATGGGTTTCAGCTATGGGAAGGAGAAGAAATTGATCAGAAACGAAGAATCT 663
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 592 GAAAGCAGAATGGGTTTCAGGTATGGGAAGGAGAAGAAATTGATCAGAAACGAAGAATCT 651
Query 664 CCATTACCTTGAGAAAGCTATGTCAAGCCTAAGGGTGTTA-TCAATCCGATTTTAATCCT 722
|||||||||||||||||||||||||||| |||| |||| | |||||| ||||| |||| |
Sbjct 652 CCATTACCTTGAGAAAGCTATGTCAAGCGTAAGTGTGT-AGTCAATCTGATTTAAATCTT 710
Query 723 TATTAGAG 730
||||||||
Sbjct 711 TATTAGAG 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5