BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02500.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490316 jgi|Araly1|490316|fgenesh2_kg.6__3450__AT4G02500.1 2789 0.0
Ahg939360 jgi|Araly1|939360|scaffold_503551.1 869 0.0
> Ahg490316 jgi|Araly1|490316|fgenesh2_kg.6__3450__AT4G02500.1
Length=1744
Score = 2789 bits (1510), Expect = 0.0
Identities = 1690/1771 (95%), Gaps = 36/1771 (2%)
Strand=Plus/Plus
Query 5 AGTAACTTTGGTAATTAACAGTGTTATTATCAAATTCGAATCTCTTACATTAATGGAAAC 64
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 2 AGTAACTTTGGTAATTAACA--G--ATTATCAAATTCGAATCTCTGACATTAATGGAAAC 57
Query 65 TCAGATCTTCTCTTAAAAACACATAAAGCACAGATCTTTTACAGAGAATCTTGTAAGAAG 124
|||||||||||||||||||||| | || | | | || | |||||| |
Sbjct 58 TCAGATCTTCTCTTAAAAACAC----A-CA-A-AGC----AC--A-AATCTT-T------ 96
Query 125 AAAGAAGATGATTGAGAGGTGTTTAGGAGCTTACCGGTGCCGGAGAATCCAAAGAGCTTT 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 97 -AAGAAGATGATTGAGAGGTGTTTAGGAGCTTACCGGTGCCGGAGAATCCAAAGAGCATT 155
Query 185 ACGCCAATTAAAGGTAACGATTCTCTGTCTTCTTCTTACCGTTGTTGTCCTACGTAGCAC 244
||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 156 ACGTCAATTAAAGGTAACGATTCTCTGTCTTGTTCTCACCGTAGTTGTCCTACGTAGCAC 215
Query 245 AATCGGCGCCGGTAAATTCGGAACTCCGGAGCAAGATCTTGACGAGATCCGTCAACATTT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AATCGGCGCCGGTAAATTCGGAACTCCGGAGCAAGATCTTGACGAGATCCGTCAACATTT 275
Query 305 CCACGCACGCAAACGAGGTGAGCCTCACCGTGTCCTCGAAGAAATTCAGACCGGAGGAGA 364
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 276 CCACGCACGCAAACGAGGTGAGCCTCACCGTGTCCTTGAAGAAATCCAGACCGGAGGAGA 335
Query 365 TTCTTCTTC--C----GGTGACGGTGGAGGTAATTCCGGTGGGAGTAATAACTACGAGAC 418
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 336 TTCTTCTTCTTCCTCCGGTGACGGTGGAGGTAATTCCGGTGGGAGTAATAACTATGAGAC 395
Query 419 GTTTGACATCAACAAGATTTTCGTTGACGAAGGTGAAGAAGAGAAACCCGACCCGAATAA 478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GTTTGACATCAACAAGATATTCGTTGACGAAGGTGAAGAAGAGAAACCCGACCCGAATAA 455
Query 479 ACCTTACACTCTCGGACCCAAGATATCAGATTGGGATGAGCAGAGATCTGATTGGTTAGC 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 456 ACCTTACACTCTCGGACCCAAGATATCAGATTGGGATGAGCAGAGATCCGATTGGTTAGC 515
Query 539 TAAGAACCCTAGCTTCCCTAATTTCATCGGACCTAACAAGCCACGTGTTCTTTTGGTGAC 598
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 516 TAAGAACCCTAGCTTCCCTAATTTCATCGGACCAAACAAGCCACGTGTCCTTTTGGTTAC 575
Query 599 TGGTTCGGCGCCAAAACCATGTGAGAATCCTGTCGGTGATCATTACCTCTTGAAATCGAT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGGTTCGGCGCCAAAACCATGTGAGAATCCTGTCGGTGATCATTACCTCTTGAAATCGAT 635
Query 659 CAAGAACAAGATCGATTACTGTAGGTTACATGGGATCGAGATCTTCTACAACATGGCTCT 718
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 636 CAAGAACAAGATCGATTACTGTAGGTTACATGGGATCGAGATCTTCTATAATATGGCTCT 695
Query 719 TCTCGATGCAGAGATGGCTGGTTTTTGGGCAAAGCTTCCATTGATTAGGAAGCTTTTGTT 778
||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 696 TCTTGATGCGGAGATGGCTGGTTTTTGGGCAAAGCTACCGTTGATTAGGAAGCTTTTGTT 755
Query 779 GTCACATCCTGAGATTGAGTTTCTTTGGTGGATGGATAGTGATGCTATGTTTACAGATAT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 756 GTCACATCCTGAGATTGAGTTTCTTTGGTGGATGGATAGTGATGCTATGTTTACGGATAT 815
Query 839 GGCTTTTGAGCTTCCATGGGAGAGGTATAAAGATTACAATCTGGTGATGCATGGATGGAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GGCTTTTGAGCTTCCATGGGAGAGGTATAAAGATTACAATCTGGTGATGCATGGATGGAA 875
Query 899 TGAGATGGTTTATGATCAGAAGAATTGGATTGGGTTGAATACAGGGAGTTTCTTGCTTAG 958
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 876 TGAGATGGTTTATGATCAGAAGAATTGGATTGGGTTGAATACTGGGAGTTTCTTGCTTAG 935
Query 959 GAACAATCAATGGGCACTTGATTTGCTTGATACTTGGGCTCCCATGGGTCCTAAAGGGAA 1018
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 936 GAACAATCAATGGGCACTTGATTTGCTCGATACTTGGGCTCCTATGGGTCCTAAAGGAAA 995
Query 1019 GATCCGTGAAGAAGCGGGTAAGGTTTTGACCCGTGAGCTCAAGGATAGACCGGTGTTCGA 1078
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 996 GATCCGTGAAGAAGCGGGTAAGGTTTTAACCCGTGAGCTCAAGGATAGACCGGTGTTCGA 1055
Query 1079 AGCTGATGATCAGTCTGCTATGGTTTATCTGTTGGCTACTCAGCGAGACGCTTGGGGCAA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1056 AGCTGATGATCAGTCTGCTATGGTTTATCTGTTGGCTACTCAGCGAGACGCTTGGGGAAA 1115
Query 1139 TAAGGTGTACCTAGAAAGTGGATACTATCTTCACGGTTACTGGGGGATTCTTGTGGACAG 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1116 TAAGGTGTACCTAGAAAGTGGATACTATCTTCACGGTTACTGGGGGATTCTTGTGGACCG 1175
Query 1199 ATATGAAGAAATGATAGAAAACTACCACCCGGGTCTAGGAGATCACAGATGGCCATTGGT 1258
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1176 ATATGAAGAAATGATAGAAAACTACCACCCGGGTCTAGGCGATCACAGATGGCCATTGGT 1235
Query 1259 GACTCACTTTGTCGGTTGCAAACCGTGTGGGAAATTTGGTGATTACCCGGTGGAACGGTG 1318
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1236 GACTCACTTTGTCGGTTGCAAACCCTGTGGGAAATTTGGTGATTACCCGGTGGAACGTTG 1295
Query 1319 TCTAAAACAAATGGACAGAGCCTTTAACTTTGGAGATAACCAGATTCTGCAAATCTATGG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TCTAAAACAAATGGACAGAGCCTTTAACTTTGGAGATAACCAGATTCTGCAAATCTATGG 1355
Query 1379 TTTCACTCACAAATCTTTGGCTAGTCGTAAAGTCAAGAGAGTGCGGAACGAGACTAGCAA 1438
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1356 TTTCACTCACAAATCTTTGGCTAGTCGCAAAGTCAAGAGAGTGCGAAACGAGACTAGCAA 1415
Query 1439 TCCGTTGGAGATGAAAGACGAGCTCGGGTTGCTTCATCCGGCGTTTAAGGCGGTTAAGGT 1498
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1416 TCCGTTGGAGATGAAAGACGAGCTCGGGTTGCTTCACCCGGCGTTTAAGGCGGTTAAGGT 1475
Query 1499 ACAAACCAATCAAGTTTGAATCGGTTTTGCGTTTAGGATTTGTGTTATGTTTCTCGCTAT 1558
|||||||||||||||||||||| | | ||||||||||||||||| | |||| || ||||
Sbjct 1476 ACAAACCAATCAAGTTTGAATCAGATCTGCGTTTAGGATTTGTGCTCTGTTACTTACTAT 1535
Query 1559 ATTTATGTCTTGTGTCTTTGCTTGTTGTTGTACTAAGATGGATGATAAA-GTATTGTGCA 1617
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1536 ATTTATGTCTTGCGTCTTTGCTTGTTGTTGTACTAAGATGGATGATAAAAGTATTGTGCA 1595
Query 1618 GAGACATCAGTTAATTCTTTGGTTTTACTTTGTCTCTACGTCTAGAGTTCTATTACGAAA 1677
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 GAGACATCAGTTTATTCTTTGGTTTTACTTTGTCTCTACGTCTAGAGTTCTATTACGAAA 1655
Query 1678 TCAAAATGTTGTTTTTCTTCCTTTTTGT-TCTTTGTAATCCATTAGAACTTGAGATTTTG 1736
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1656 TCAAAATGTTGTTTTTCTTCCTTTTT-TAT-TTTGTAATCCATTAGAACTTGAGATTTTG 1713
Query 1737 TAGCTTCATGGATCAATAATCTGTGTTAATT 1767
|||||||||||||||||||||||||||||||
Sbjct 1714 TAGCTTCATGGATCAATAATCTGTGTTAATT 1744
> Ahg939360 jgi|Araly1|939360|scaffold_503551.1
Length=1421
Score = 869 bits (470), Expect = 0.0
Identities = 1042/1309 (80%), Gaps = 75/1309 (6%)
Strand=Plus/Plus
Query 119 AAGAAGAAAGAAGATGATTGAGAGGTGTTTAGGAGCTTACCGGTGCCGGAGAATCCAAAG 178
|||||| ||||||||||| |||| |||| ||||||| | |||| |||||| | || ||
Sbjct 10 AAGAAG-AAGAAGATGATAGAGAAGTGTATAGGAGCGCATCGGTTTCGGAGATTACAGAG 68
Query 179 AGCT-TTACGCCAATTAAAGGTAACGATTCTCTGTCTTCTTCTTACCGTTGTTGTCCTAC 237
| | || || ||| ||| || |||||||| || ||| |||| ||||| | ||| |||
Sbjct 69 A-TTCTTGCGTCAAGGAAAAGTGACGATTCTTTGCCTTGTTCTCACCGTCATCGTCTTAC 127
Query 238 GTAGCACAATCGGCGCCGGTAAATTCGGAACTCCGGAGCAAGATCTTGACGAGATCCGTC 297
|| |||||||||| |||||||| || || || |||||| ||||| | || |||||||||
Sbjct 128 GTGGCACAATCGGAGCCGGTAAGTTTGGTACGCCGGAGAAAGATATCGAAGAGATCCGTG 187
Query 298 AACATTTC--C-ACGCACGCAAACGAGGTGAGCCTCACCGTGTCCTCGAAGAAAT-TCAG 353
| |||||| | || | || ||||| || |||||||||||||| |||| || | ||
Sbjct 188 AGCATTTCTTCTACACGCGTAAACGCGGCGAGCCTCACCGTGTTCTCGTCGAGGTCTC-T 246
Query 354 ACCGGAGGA-GATTCTTCTTCCGGTGACGGTGGAGGTAATTCCGGTGGGAGTAATAACTA 412
|| | | || | || |||| ||| ||| | || | | | |||| | |||
Sbjct 247 TCC--AAAACGA--CGTCATCCGAAGAC---GGA-G--ATGCAAAT--G-GTAACAGCTA 293
Query 413 CGAGACGTTTGACATCAACAAGATTTTCGTTGACGAAGGTGAAGAAGAGAAA-C-C-CGA 469
|||||| || || ||||||||| | |||||||| ||||| || ||||||||| | | ||
Sbjct 294 CGAGACCTTCGATATCAACAAGCTATTCGTTGATGAAGGAGATGAAGAGAAATCTCAAGA 353
Query 470 CCCGAATAAACCTTACACTCTCGGACCCAAGATATCAGATTGGGATGAGCAGAGATC-TG 528
|| || ||||||||| ||||||| |||||||| || |||||||||||||||||| | ||
Sbjct 354 CCGGACTAAACCTTATTCTCTCGGTCCCAAGATCTCTGATTGGGATGAGCAGAGA-CGTG 412
Query 529 ATTGG-T-TAGCTAAGAACCCTAGCTTCCCTAATTTCATCGG-ACCTAACAAGCC-ACGT 584
||||| | | | || ||||||| ||| |||||||| | || || || ||||| | |
Sbjct 413 ATTGGCTCAAAC-AA-AACCCTAATTTCTCTAATTTCGT-GGCGCCAAAGAAGCCTA-GG 468
Query 585 GTTCTT-TTGGTGACTGGTTCGGCGCCAAAACCATGTGAGAATCCTGTCGGTGATCATTA 643
|||||| || || || ||||| || || ||||| ||||||||||| || || || |||||
Sbjct 469 GTTCTTCTT-GTCACAGGTTCAGCTCCTAAACCGTGTGAGAATCCAGTAGGAGACCATTA 527
Query 644 CCTCTTGAAATCGATCAAGAACAAGATCGATTACTGTAGG-TTACATGGGATCGAGATCT 702
||||||||||||||| |||||||| ||||||||||||||| || || || ||||||||||
Sbjct 528 CCTCTTGAAATCGATTAAGAACAAAATCGATTACTGTAGGATT-CACGGAATCGAGATCT 586
Query 703 TCTACAACATGGCTCTT-CTCGATGCAGAGATGGCTGGTTTTTGGGCAAAGCTTCCATTG 761
||||||||||||| || |||||||| ||||||||||| || ||||| |||||||| |||
Sbjct 587 TCTACAACATGGC-GTTGCTCGATGCTGAGATGGCTGGATTCTGGGCCAAGCTTCCGTTG 645
Query 762 ATTAGGAAGCTT-TTGTTGTCACATCCTGAGATTGAGTTTCTTTGGTGGATGGATAGTGA 820
||||||||| || | ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 646 ATTAGGAAG-TTACTCTTGTCTCATCCTGAGATTGAGTTTCTATGGTGGATGGATAGTGA 704
Query 821 TGCTATGTTTACAGATATGGCT-TTTGAGCTTCCATGGGAGAGGTATAAAGATTACAATC 879
||| |||||||| || |||| | || |||||||||||||||||||||||||||||||| |
Sbjct 705 TGCCATGTTTACGGACATGG-TGTTCGAGCTTCCATGGGAGAGGTATAAAGATTACAA-C 762
Query 880 T-GGTGATGCATGGATGGAATGAGATGGTTTATGATCAGAAGAATTGGATTGGGT-TGAA 937
| |||||||||||| ||||| |||||||||||||| ||||||||||||||||| | ||||
Sbjct 763 TTGGTGATGCATGGTTGGAACGAGATGGTTTATGACCAGAAGAATTGGATTGG-TCTGAA 821
Query 938 TACAGGGAGTTTCTTGCTTAGGAACAATCA-A-TGGGCACTTGAT-TTGCTTGATACTTG 994
||||| |||||||||||||||||| ||| | ||| | |||||| || ||||| ||||
Sbjct 822 CACAGGAAGTTTCTTGCTTAGGAAC--TCACAGTGGTCGCTTGATCTT-CTTGACGCTTG 878
Query 995 GGCTCCCATGGGTCCTAAAGGGAAGATCCGTGAAGAAGCGGGTAAGGTTTTGACCCGTGA 1054
|||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 879 GGCTCCTATGGGTCCGAAAGGGAAGATCCGAGAAGAAGCGGGTAAAGTCTTGACCCGGGA 938
Query 1055 GCTCAAGGATAGACCGGTGTTCGAAGCTGATGATCAGTCTGCTATGGTTTATCTGT-TGG 1113
|| || || |||||| |||||||||||| ||||| || || ||||||||||| | |||
Sbjct 939 ACTTAAAGACCGACCGGCGTTCGAAGCTGACGATCAATCGGCGATGGTTTATCT-TCTGG 997
Query 1114 CTACTCAGCGAGACGCT-TGGGGCAAT-AAGGTGTACCTAGAAAGTGGATACTATCTT-C 1170
| || || |||| | ||||| | || || || ||||| ||||| || || ||| |
Sbjct 998 CGACGGAGAGAGA-GAAGTGGGG-AGGCAAAGTTTATCTAGAGAGTGGTTATTA-CTTGC 1054
Query 1171 ACGGTTACTGGGGGATTCTTG-TGGACAGATATGAAGAAATGATAGAAAA-C-TACCACC 1227
||||||| |||||||| ||| | ||| | || || |||||||| || || | || |||
Sbjct 1055 ACGGTTATTGGGGGATA-TTGGTAGACCGGTACGAGGAAATGATTGAGAATCATAA-ACC 1112
Query 1228 CGGGTCTAGGAGATCA-CAGATGGCCATTGGTGACTCACTTT-GTCGGTTGCAAACCGTG 1285
|||| | ||||| || | | |||||| |||| || || ||| ||||| || ||||||||
Sbjct 1113 -GGGTTTTGGAGACCATCGG-TGGCCACTGGTAACGCA-TTTCGTCGGGTGTAAACCGTG 1169
Query 1286 TGGGAAATTTGGTGATTACCCGGTGGAACGGTGTCTAAAACAAATGGACAGAGCCTTTAA 1345
|||||||| || ||||| ||||||||||||||||| || ||||| ||||| |||||
Sbjct 1170 CGGGAAATTCGGAGATTATCCGGTGGAACGGTGTCTGCGGCAGATGGATAGAGCGTTTAA 1229
Query 1346 CTTT-GGAGATAACCAGATTCTGCAAATCTATGGTTTCACTCACAAATC 1393
||| ||||| || ||||| || ||||| ||||||||||| || |||||
Sbjct 1230 -TTTCGGAGACAATCAGATCCTTCAAATGTATGGTTTCACGCATAAATC 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5