BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02510.1
Length=4752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943476 jgi|Araly1|943476|scaffold_604020.1 6453 0.0
Ahg943479 jgi|Araly1|943479|scaffold_604023.1 1048 0.0
Ahg936070 jgi|Araly1|936070|scaffold_500261.1 359 1e-97
> Ahg943476 jgi|Araly1|943476|scaffold_604020.1
Length=4680
Score = 6453 bits (3494), Expect = 0.0
Identities = 3881/4065 (95%), Gaps = 37/4065 (1%)
Strand=Plus/Plus
Query 581 ATGAGGGGGAGAGTGAGTTGGGTGGAAAAGTTGATGTTGACGATAAAAGTGATAATGTTA 640
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 631 ATGAGGAGGAGAGTGAGTTGAGTGGAAAAGTTGATGTTGACGATAAAAGTGATAATGTTA 690
Query 641 TTGAAGAAGAGGGTGTGGAGTTAACTGATAAAGGAGACGTCATTGTGAACTCGTCCCCTG 700
||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 691 TTGAAGAAGAGGGTGTGAAGTTAACTGATAAAGGAGACGTCATAGTGGACTCGTCCCCTG 750
Query 701 TAGAATCAGTGCATGTTGATGTGGCAAAACCAGGGGTGGTTGTTGTAGGAGACGCAGAGG 760
|||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 751 TAGAGTCAGTGCATGTTGATGTGGCAAAACCAGGGGTGGCTGTAGTAGGAGACGCAGAGG 810
Query 761 GAAGTGAGGAGTTGAAGATTAATGCTGATGCTGAAACTCTTGAAGTGGCTAATAAGTTTG 820
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 811 GAAGTGAGGAGTTGAAGATTAATGCTGATGCTGAAACTCTTGAAGTGGCGAATAAGTTTG 870
Query 821 ATCAAATTGGGGATGATGATAGTGGTGAATTTGAACCTGTGTCTGACAAGGCCATTGAGG 880
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 871 ATCAAATTGGGGATGATGATGGTGGTGAATTTGAACCTGTGTCTGATAAGGCCATTGAGG 930
Query 881 AGGTAGAAGAAAAATTTACTAGCGAATCAGACTCTATTGCAGACTCCTCTAAGTTAGAAT 940
|||||||||||||| | | || | || | | |||||||||||||| |||| ||
Sbjct 931 AGGTAGAAGAAAAA--T--T---GAGT-AG--TGGA--GCAGACTCCTCTAAATTAGTAT 978
Query 941 CTGTGGATACCAGTGCTGTAGAGCCAGAGGTTGTAGCTGCCGAGAGTGGGAGTGAACCAA 1000
|||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 979 CTGTGGATACCAATGCTGCAGAGCCAGAGGTCGTAGCTGCCGAGAGTGGGACTGAACCAA 1038
Query 1001 AGGATGTGGAA-AAAGCCAACGGATTGGAGAAGGGTATGACTTATGCTGAAGTAATCAAG 1059
||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1039 AGGATGTGGAAGAAA-CTAACGGATTGGAGAAGGGTATGACTTATGCTGAGGTAATCAAG 1097
Query 1060 GCAGCTAGTGCAGTAGCTGACAATGGAACCAAAGAGGAGGAGAGTGTGCTCGGTGGCATA 1119
||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1098 GCAGCTACTGCAGTAGCTGACAATGGAACCAAAGAGGAGGAGAGTGTGTTCAGTGGCGTA 1157
Query 1120 GTCGATGATGCAGAAGAAGGTGTTAAGTTAAACAACAAAGGAGACTTTGTGGTGGACTCA 1179
|||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1158 GTCGATGATGAAGAAGAAGGTGTTAAGTTAACCAACAAAAGAGACTTTGTGGTGGACTCA 1217
Query 1180 TCTGCTATTGAAGCTGTGAATGTAGATGTGGCAAAGCCAGGGGTTGTTGTTGTTGGAGAC 1239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TCTGCTATAAAAGCTGTGAATGTAGATGTGGCAAAGCCAGGGGTTGTTGTTGTTGGAGAC 1277
Query 1240 GTAGAGGTGAGTGAGGTGCTGGAAACTGATGGCAACATCCCTGATGTGCATAATAAGTTT 1299
||||||| ||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 1278 GTAGAGGCAAGTGAGGTGCTGGAAACTGATGGTAAGATCACTGATGTGCATAATAAGTTT 1337
Query 1300 GATCCAATTGGCCAAGGTGAAGGTGGTGAAGTTGAACTTGAATCCGATAAAGCCACAGAG 1359
|||||| ||||||||| |||||||| || |||||||| |||||| ||||||||||| |||
Sbjct 1338 GATCCAGTTGGCCAAGTTGAAGGTGATGGAGTTGAACGTGAATCTGATAAAGCCACTGAG 1397
Query 1360 GAGGGAGGAGGA-AAGTTGGTTAGTGAAGGAGACTCTATGGTTGACTCCTCTGTGGTGGA 1418
||||||||| || |||||| |||||||||||||||| ||||||| || |||||||||||
Sbjct 1398 GAGGGAGGA-GAGAAGTTGACTAGTGAAGGAGACTCTGTGGTTGATTCATCTGTGGTGGA 1456
Query 1419 CTCTGTTGATGCTGATATCAATGTTGCAGAGCCAGGGGTTGTGGTTGTCGGGGCGGCTAA 1478
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1457 ATCTGTTGATGCTGATATCAATGTTGCAGAGCCAGGGGTTGTGGTTGTTGGGGCGGCGAA 1516
Query 1479 GGAGGCTGTAATTAAGGAAGATGATAAAGATGATGAGGTTGACAAGACCATCTCAAATAT 1538
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1517 GGAGGCTGTAATTAAGGAAGATGATGGAGATGATGAGGTTGACAAGACCATCCCAAATAT 1576
Query 1539 TGAGGAACCTGATGACCTGACTGCTGCATATGATGGAAATTTTGAATTGGCTGTTAAGGA 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1577 TGAGGAACCTGATGACCTGACTGCTGCATATGATGGAAATTTTGAATTGGCTGCTAAGGA 1636
Query 1599 AATATCAGAGGCTGCCAAAGTAGAGCCAGACGAACCAAAAGTAGGTGTGGAAGTAGAAGA 1658
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1637 AATATCAGAGGCAGCCAAAGTAGAGCCTGACGAACCAAAAGTAGGTGTGGAAGTGGAAGA 1696
Query 1659 ATTGCCTGTTTCTGAAAGTTTAAAAGTGGGTTCAGTTGATGCAGAAGAGGATTCAATTCC 1718
|| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||
Sbjct 1697 ATCGCCTGTTTCTGAAAGTTTAACAGTGGGTTCGGTTGATGCAAAAGAGGATTCAAATCC 1756
Query 1719 TGCAGCTGAGTCACAG-TT---------------T--GAGGTTCGGAAAGTTGTCGAAGG 1760
|||||||| ||||||| || | ||||||||| ||||| |||||||
Sbjct 1757 TGCAGCTGGGTCACAGTTTGAAGCAAACCAAAACTCAGAGGTTCGGGAAGTTTTCGAAGG 1816
Query 1761 GGACAGTGCTGAAGAGGATGAAAACAAGCTCCCAGTCGAAGACATTGTTTCTTCTCGTGA 1820
||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 1817 GGACAATGCTGAAGAGGGTGGAAACAAGCTCCCAGCCGAAGACATTGTTTCTTCTCGTGA 1876
Query 1821 GTTTAGCTTTGGAGGCAAGGAAGTGGACCAGGAACCTTCTGGCGAAGGTGTTACCAGGGT 1880
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 GTTTAGCTTTGAAGGCAAGGAAGTGGACCAGGAACCTTCTGGCGAAGGTGTTACCAGGGT 1936
Query 1881 TGATGGGTCTGAAAGTGAAGAAGAAACTGAAGAGATGATATTTGGGAGTTCTGAAGCTGC 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 TGATGGGTCTGAAAGTGAAGAAGAAACTGAAGAGATGATATTTGGGAGTTCTGAAGCTGC 1996
Query 1941 AAAACAGTTCTTAGCAGAGTTGGAAAAGGCTTCTTCTGGTATAGAGGCACATTCTGATGA 2000
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 AAAACAGTTCTTAGCAGAGCTGGAAAAGGCTTCTTCTGGTATAGAGGCACATTCTGATGA 2056
Query 2001 AGCAAACATTTCTAACAATATGTCAGATAGGATTGATGGCCAGATTGTCACCGATTCTGA 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 AGCAAACATTTCTAACAATATGTCAGATAGGATTGATGGCCAGATTGTCACCGATTCTGA 2116
Query 2061 CGAGGATGTAGACACAGAGGATGAAGGTGAGGAGAAAATGTTTGATACTGCAGCTTTGGC 2120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2117 CGAGGATGTAGACACAGAGGATGAAGGTGAGGAGAAAATGTTTGATTCTGCAGCTTTGGC 2176
Query 2121 TGCGCTTTTGAAGGCAGCCACTGGTGGTGGAAGTTCAGAAGGTGGCAATTTTACCATAAC 2180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2177 TGCGCTTTTGAAGGCAGCCACTGGTGGTGGAAGTTCAGAAGGTGGCAACTTTACCATAAC 2236
Query 2181 ATCTCAGGATGGCACGAAGCTTTTCTCTATGGATCGACCTGCTGGTTTGAGTTCATCGTT 2240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 ATCTCAGGATGGCACAAAGCTTTTCTCTATGGATCGACCTGCTGGTTTGAGTTCATCGTT 2296
Query 2241 AAGGCCCTTGAAGCCTGCAGCAGCTCCACGTGCAAACCGTTCCAACATCTTTTCCAATTC 2300
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2297 AAGGCCCTTGAAACCTGCAGCAGCTCCACGTGCAAACCGTTCCAACATCTTTTCCAATCC 2356
Query 2301 TAATGTCACAATGGCAGATGAGACTGAGATTAACTTGAGCGAGGAAGAGAAACAGAAATT 2360
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2357 TAATGTCACAATGGCGGATGAGACTGAGGTTAACTTGAGCGAGGAAGAGAAACAGAAATT 2416
Query 2361 AGAAAAGTTGCAAAGCCTCCGTGTGAAGTTTTTGCGGCTTTTGCAAAGGTTGGGTCATTC 2420
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2417 AGAAAAGTTGCAAAGCCTCCGTGTGAAGTTTTTGCGGCTTTTGCAAAAGTTGGGGCATTC 2476
Query 2421 GGCAGAAGATTCAATTGCAGCGCAGGTTCTTTACCGTCTTGCACTACTTGCTGGGAGACA 2480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2477 GGCAGAAGATTCAATCGCAGCGCAGGTTCTTTACCGTCTTGCACTACTTGCTGGGAGACA 2536
Query 2481 AGCAGGGCAGTTATTCAGTCTTGATGCTGCAAAGAAGAAGGCTGTGGAGTCTGAGGCTGA 2540
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2537 AACAGGGCAGTTTTTCAGTCTTGATGCTGCAAAGAAGAAGGCTGTGGAGTCTGAGGCTGA 2596
Query 2541 GGGCAACGAAGAATTGATCTTCTCCCTAAACATACTGGTCCTTGGAAAAGCCGGGGTGGG 2600
|||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2597 GGGCAACGAAGATTTGAACTTCTCTCTAAACATACTGGTCCTTGGAAAAGCTGGGGTGGG 2656
Query 2601 AAAAAGTGCTACTATAAATTCCATTTTGGGAAACCAGATTGCGTCCATTGATGCTTTTGG 2660
|||||||||||||||||| |||||||||||||| |||| |||||||| |||||||||||
Sbjct 2657 AAAAAGTGCTACTATAAACTCCATTTTGGGAAATCAGAAGGCGTCCATCGATGCTTTTGG 2716
Query 2661 GCTCTCAACCACTTCGGTTAGAGAAATTTCTGGAACGGTGAATGGTGTCAAGATTACCTT 2720
||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 2717 GCTCTCAACTACTTCGGTTAGAGAAATTTCTGAAACCGTGGGTGGTGTCAAGATTACCTT 2776
Query 2721 TATTGATACTCCGGGTTTGAAGTCTGCTGCGATGGATCAAAGTACAAATGCAAAAATGTT 2780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2777 TATTGATACTCCGGGTTTGAAGTCTGCTGCGATGGATCAAAGTGCAAATGCAAAAATGTT 2836
Query 2781 GTCCTCTGTAAAGAAGGTAATGAAGAAGTGTCCCCCTGATATTGTACTATATGTAGATCG 2840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2837 GTCCTCTGTAAAGAAGGTAATGAAGAAGTGTCCCCCTGATATTGTACTATATGTAGATCG 2896
Query 2841 TCTTGACACCCAGACCAGGGACTTGAACAATTTGCCCTTGCTAAGGACGATTACTGCTTC 2900
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2897 TCTTGACACCCAGACAAGGGACTTGAACAATATGCCCTTGCTAAGGACGATTACTGCTTC 2956
Query 2901 TCTTGGTACATCCATATGGAAAAACGCTATAGTGACATTGACCCATGCGGCTTCTGCCCC 2960
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2957 TCTTGGTACATCAATATGGAAAAACGCTATAGTGACATTGACCCATGCTGCTTCTGCCCC 3016
Query 2961 TCCTGATGGCCCATCTGGCACCCCATTGAGCTATGATGTGTTTGTAGCGCAGTGCTCACA 3020
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3017 TCCTGATGGCCCATCTGGCACCCCATTGAGCTATGATGTGTTTGTAGCACAGTGCTCACA 3076
Query 3021 TATTGTGCAACAGTCTATAGGACAGGCTGTTGGAGATCTACGCTTGATGAATCCAAGTCT 3080
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 3077 TATTGTGCAACAGTCTATAGGGCAGGCCGTTGGAGATCTACGCTTGATGAATCCAAGTCT 3136
Query 3081 GATGAATCCAGTTTCACTTGTTGAGAATCACCCCTTGTGTAGGAAGAACCGGGAGGGAGT 3140
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3137 GATGAATCCAGTTTCTCTTGTTGAGAATCACCCCTTGTGTAGGAAGAACCGGGAGGGAGT 3196
Query 3141 GAAGGTTCTCCCGAATGGCCAAACTTGGAGATCTCAGCTGTTGCTATTGTGTTACTCCCT 3200
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3197 GAAGGTTCTCCCGAATGGCCAAACTTGGAGACCTCAGCTGTTGCTATTGTGTTACTCCCT 3256
Query 3201 GAAGGTTTTGTCAGAAACAAATTCTCTATTGAGGCCTCAAGAACCATTGGACCATCGTAA 3260
|||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 3257 GAAGGTTTTGTCAGAAGCAAATTCTCTATTGAAGCCTCAAGAACCATTGGATCATCGTAA 3316
Query 3261 AGTATTTGGTTTCCGAGTTAGATCCCCGCCTCTCCCTTACTTGTTGTCTTGGCTGTTGCA 3320
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 3317 AGTATTTGGTTTCCGAGTTCGATCCCCGCCTCTCCCTTACTTGTTGTCTTGGCTGTTACA 3376
Query 3321 GTCCCGTGCACATCCTAAGCTCCCTGGAGACCAAGGTGGTGATAGTGTTGACTCTGATAT 3380
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3377 GTCCCGTGCACACCCTAAGCTCCCTGGAGACCAAGGTGGTGATAGTGTTGACTCTGATAT 3436
Query 3381 CGAAATTGATGATGTGTCTGATTCTGAGCAGGAAGATGGGGAAGATGATGAGTATGACCA 3440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3437 CGAAATTGATGATGTGTCTGATTCTGAGCAGGAAGATGGGGAAGATGATGAGTATGACCA 3496
Query 3441 GCTGCCACCATTTAAGCCTCTTCGAAAAACCCAACTTGCAAAGCTCTCAAATGAACAGAG 3500
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 3497 GCTGCCACCATTTAAGCCTCTTCGAAAAACCCAACTTGCAAAACTCTCAAAGGAACAGAG 3556
Query 3501 AAAGGCATATTTCGAGGAGTATGATTACCGTGTAAAGCTCCTGCagaagaagcaatggag 3560
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3557 AAAGGCATATTTCGAGGAGTATGATTACCGGGTAAAGCTCCTGCAGAAGAAGCAATGGAG 3616
Query 3561 agaggaattaaagaggatgaaagaaatgaagaaaaacgggaagaagCTGGGTGAAAGTGA 3620
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 3617 AGAGGAATTGAAGAGGATGAAAGAAATGAAGAAAAACGGGAAGAAGGTGGGTGAGAGTGA 3676
Query 3621 GTTTGGTTATCCGGGAGAAGAAGATGATCCAGAAAACGGGGCTCCAGCTGCAGTGCCAGT 3680
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3677 GTTTGGTTATCTGGGAGAAGAAGATGATCCAGAAAACGGGGCTCCAGCTGCAGTGCCAGT 3736
Query 3681 TCCATTACCCGATATGGTTTTGCCACCTTCATTTGATAGTGATAACTCAGCTTACCGATA 3740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3737 TCCATTACCCGATATGGTTTTGCCACCTTCATTTGATAGTGATAACTCAGCTTACCGATA 3796
Query 3741 CCGATATCTGGAACCCACTTCACAACTCCTAACCAGGCCAGTGTTGGATACCCATGGTTG 3800
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3797 CCGATTTCTGGAACCCACTTCACAACTCCTAACCAGGCCAGTGTTGGACACCCATGGTTG 3856
Query 3801 GGACCATGACTGTGGATATGACGGCGTCAATGCAGAACACAGTCTTGCTCTAGCTAG-CC 3859
|||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||
Sbjct 3857 GGACCATGACTGTGGATATGACGGCGTCAATGCAGAACACAGTCTTACTGTAGC-AGGCC 3915
Query 3860 GGTTCCCTGCCACAGCTACTGTCCAAGTCACCAAGGACAAGAAAGAGTTCAACATTCATC 3919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3916 GGTTCCCTGCCACAGCTACTGTCCAAGTCACCAAGGACAAGAAAGAGTTCAACATTCATC 3975
Query 3920 TGGACTCCTCTGTGTCTGCTAAGCACGGGGAGAATGGATCCACCATGGCAGGGTTCGATA 3979
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3976 TGGACTCCTCGGTGTCTGCTAAGCACGGCGAGAATGGATCCACCATGGCAGGGTTCGATA 4035
Query 3980 TTCAGAATGTAGGCAAGCAGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAGAATT 4039
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 4036 TTCAGAATGTAGGTAAGCAGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAAAACT 4095
Query 4040 TGAGGAAGAACAAGACAACTGTTGGAGGGTCAGTGACATTCTTGGGAGAGAACATCGCCA 4099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4096 TGAGGAAGAACAAGACAACTGTTGGAGGGTCAGTGACATTCTTGGGAGAGAACATCGCCA 4155
Query 4100 CTGGGGTCAAACTCGAGGACCAAATAGCACTGGGGAAAAGGTTGGTGCTTGTGGGCAGCA 4159
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4156 CTGGTGTCAAACTCGAGGACCAAATAGCACTGGGGAAAAGGTTTGTGCTTGTGGGCAGCA 4215
Query 4160 CTGGGACAATGCGATCACAGGGAGATTCGGCCTATGGTGCGAACCTCGAGGTCAGGCTTA 4219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4216 CTGGGACAATGCGATCACAGGGAGATTCGGCCTATGGTGCGAACCTCGAGGTCAGGCTTA 4275
Query 4220 GGGAAGCTGATTTCCCAATTGGACAGGACCAATCTTCTTTTGGGCTGTCTCTGGTAAAGT 4279
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 4276 GGGAAGCTGATTTCCCAATTGGACAGGACCAATCTTCTTTTGGGCTGTCTTTGGTGAAGT 4335
Query 4280 GGAGAGGCGATTTAGCCCTTGGAGCCAATCTCCAATCTCAAGTCTCTGTTGGAAGGAACT 4339
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 4336 GGAGAGGTGATTTAGCCCTCGGAGCCAATCTCCAATCTCAACTCTCTGTTGGAAGGAACT 4395
Query 4340 CAAAGATTGCGCTTCGTGCAGGACTTAACAACAAGATGAGCGGACAGATCACAGTCAGAA 4399
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4396 CAAAGATCGCGCTTCGTGCAGGACTTAACAACAAGATGAGCGGACAGATCACAGTCAGAA 4455
Query 4400 CCAGCAGCTCGGATCAGTTGCAAATCGCTCTCACAGCCATTCTTCCAATTGCCATGTCCA 4459
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 4456 CCAGCAGCTCGGATCAGTTGCAGATTGCTCTCACAGCCATTCTTCCAATTGCCATGTCCA 4515
Query 4460 TCTACAAGAGCATTCGACCCGAAGCGACGAACGACAAGTACAGCATGTACTAAATATGCT 4519
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 4516 TCTACAAGAGCATTCGACCAGAAGCGACAAATGACAAGTACAGCATGTACTAAATATGCT 4575
Query 4520 GATGAATGCTGCAGAATGATCTTTTCTTT-TATTACTGGTTTTTAGTTCATGTTTTTCCC 4578
|||||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 4576 GATGAATGCTGCCGAAGGATCTTTTTTTTATATTACTGGTTTTTAGTTCATGTTTTTTCC 4635
Query 4579 CCACTTTAATAAAAACTTTGTTGAAGTTTATCAAAGTTGTATTTT 4623
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4636 CCACTTTAATAAAAACTTTGTTGAAGTTTATCAAAGTTGTATTTT 4680
Score = 641 bits (347), Expect = 0.0
Identities = 469/523 (90%), Gaps = 28/523 (5%)
Strand=Plus/Plus
Query 1 ATGGACTCAAAGTCGGTTACTCCAGAACCAACCAACCCCTTCTACGCTTCTTCGGGGCAA 60
|||||||| |||||||| |||||||||||||| ||||||||||||| ||||||| |||
Sbjct 21 ATGGACTCTAAGTCGGTAACTCCAGAACCAACGAACCCCTTCTACG---CTTCGGGCCAA 77
Query 61 TCAGGAAAAACCTATGCTTCTGTTGTCGCCGCCGCTGCTGCTGCAGCCGCCGATAAGGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TCAGGAAAAACCTATGCTTCTGTTGTCGCCGCCGCTGCTGCTGCAGCCGCCGATAAGGAG 137
Query 121 GATGGTGGTGCTGTGAGTAGTGCCAAGGAGTTGGATTCCTCATCGGAGGCTGTGTCTGGT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 138 GATGGTGGTGCTGTGAGTAGTGCCAAGGAGTTGGATTCCTCGTCGGAGGCTTTGTCTGGT 197
Query 181 AATTCGGATAAGGTTGGAGCTGATGATTTATCTGACTCCGAGAAGGAGAAGCCGAATTTG 240
||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct 198 AATTCGGATAAGGTTGGAGCTGATGATTTATCTGA-T---A-A-GGAGAAGCCGAATTTG 251
Query 241 GTGGGTGATGGGAAGGTTTCCGACGAGGTGGATGGTTCTTTAAAGGAGGATTCTACTACT 300
| |||||| ||||| ||||| ||||||||||||| |||| | ||| | |
Sbjct 252 GAGGGTGACGGGAAAGTTTCTGACGAGGTGGATGATTCT-----G-------CTA-T--T 296
Query 301 CCTGAGGCTACTCCGAAGCCTGAGGTGGTTTCTGGTGAGA-CAATTGGTGTAGATGATGT 359
|||||||||||||||||||||||||| ||||||| || || ||||||| | ||||| |||
Sbjct 297 CCTGAGGCTACTCCGAAGCCTGAGGTTGTTTCTGATG-GAACAATTGGGGAAGATGGTGT 355
Query 360 TTCATCGTTATCTCCGAAGCCGGAGGCTGTTTCTGATGGTGTAGGGGTTGTGGAGGAGAA 419
|||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 356 GTCATTGCTATCTCCGAAGCCGGAGGATGTTTCTGATGGTGTAGGGGTTGTGGAGGAGAA 415
Query 420 TAAGAAGGTTAAGGAGGACGTGGAGGATATTAAAGACGATGGTGAGAGTAAGATTGAAAA 479
||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 416 GAAGAAGGTTAATGAGGACGTGGAAGATAATAAAGACGATGGTGAGAGTAAGATTGAAAA 475
Query 480 TGGGAGTGTTGATGTTG-ATGTGAAACAGGCTTCCACAGATGG 521
||||||||||||||||| | | |||||| ||||||||||||||
Sbjct 476 TGGGAGTGTTGATGTTGGA-GAGAAACAAGCTTCCACAGATGG 517
> Ahg943479 jgi|Araly1|943479|scaffold_604023.1
Length=2881
Score = 1048 bits (567), Expect = 0.0
Identities = 1064/1300 (82%), Gaps = 49/1300 (4%)
Strand=Plus/Plus
Query 1876 AGG-GTTGATGGGTCTGAAAGTGAAGAAGAAACTGAAGAGATGATATTTGGGAGTTCTGA 1934
||| |||| ||||||||||||||| ||||| ||| ||| ||||||| | |||||||| |
Sbjct 791 AGGTGTTGTTGGGTCTGAAAGTGATGAAGACACTAAAGGGATGATAATAGGGAGTTCAAA 850
Query 1935 AGCTGCAAAACAGTTCTTAGCAGAGTTGGAAAAGGCTTCTTCTGGTA-T-AGAGGCACAT 1992
| ||| | |||||||||| | |||||||||| ||| ||||||||||| | | || | |||
Sbjct 851 ATCTGGAGAACAGTTCTTGGAAGAGTTGGAAGAGGTTTCTTCTGGTATTCA-AGTC-CAT 908
Query 1993 TCTGATGAAGCAAACATTTCTAACAAT-ATGTCAGATAGGATTGATGGCCAGATTGTCAC 2051
|| |||||| |||||||| ||||| || | || |||||||||||| |||||||| ||||
Sbjct 909 TCCGATGAAACAAACATTCCTAACCATCACGT-TGATAGGATTGATAGCCAGATTTTCAC 967
Query 2052 CGATTCTGACGAGGATGTAGACACAG-AGGATGAAGGTGAGGAGAAAA-TGTTTGATACT 2109
|||||||||||||| |||||||| | | ||||| | ||||||||||| | |||||| ||
Sbjct 968 TGATTCTGACGAGGAAGTAGACAC-GAATGATGACGTTGAGGAGAAAACT-TTTGATTCT 1025
Query 2110 GCAGCTTTGGCTGCGCTTT-TGAAGGCAGCCACTGGTGGTGGAAGTTCAGAAGGTGGCAA 2168
|| |||||| ||||| ||| | ||||||||||| | ||||||||||||| ||||| ||
Sbjct 1026 GCGGCTTTGACTGCG-TTTCTAAAGGCAGCCAC---TAGTGGAAGTTCAGATGGTGGTAA 1081
Query 2169 TTTTACCATAACATCTCAGGATGGCACGAAGCTTTTCTCTATGGATCGACCTGCTGGTTT 2228
||||||||| ||| ||||||| | ||||||||| |||||||| | | |||||| |
Sbjct 1082 TTTTACCAT---ATCGCAGGATGTAATGAAGCTTTTTTCTATGGAACCTCAAGCTGGTCT 1138
Query 2229 GAGTTCATCGTTAAG-GCCCTTGAAGCCTGCAGCAGCTCCACGTGCAAACCGTTCCAACA 2287
| |||| || ||||| || || || | |||| |||| | |||| | ||||||||
Sbjct 1139 GGGTTCCTCTTTAAGATTTGTTCAA-TCT-C--CAGCCCCACTTCCAAATCATTCCAACA 1194
Query 2288 TCTTTTCCAATTCT-AATG-TCACAAT-GGCAGATGAGACTGAGATTAACTTGAGCGAGG 2344
| |||||| | ||| || | ||| ||| || || |||| ||||| ||||||||||||||
Sbjct 1195 T-TTTTCCCAGTCTAAAAGTTCA-AATGGGTGGA-GAGAGTGAGAATAACTTGAGCGAGG 1251
Query 2345 AAGAGAAACAGAAATTAGAAAAGTTGCAAAGCCTCCGTGTGAAGTTTTTGCGGCTTTTGC 2404
||||||||||||| ||||||||||||||||| | ||||| || | |||||| ||| |||
Sbjct 1252 AAGAGAAACAGAAGTTAGAAAAGTTGCAAAGTATGCGTGTAAAATATTTGCGTCTTGTGC 1311
Query 2405 AAAGGTTGG-GTCATTCGGCAGAAGATTCAATTGCAGCGCAGGTTCTTTACCG-TCTTGC 2462
| ||||||| | || || | |||||||||||| |||| ||| || ||||| | ||||||
Sbjct 1312 ATAGGTTGGAG-CAGTCTGTAGAAGATTCAATAGCAGTGCATGTGCTTTA-TGCTCTTGC 1369
Query 2463 ACTACTTGCTGGGAGACAAGCAGGGCAGTTATTCAGTCTTGATGCTGCAAAGAAGAAGGC 2522
| | ||| || |||||| | || ||||| ||||||||||| ||||||||||||| ||
Sbjct 1370 ATTTCTTACTTTGAGACATTCTGGTCAGTTGTTCAGTCTTGACGCTGCAAAGAAGATGGT 1429
Query 2523 TGTGGAGTCTGAGGCTGAGGGCAACGAAGAATT-GATCTTCTCCCTAAACATACTGGTCC 2581
| |||||||||||||| |||| || |||| || || ||||||||||||||| ||||||
Sbjct 1430 TATGGAGTCTGAGGCTAAGGG-AA--AAGACTTAAAT-TTCTCCCTAAACATATTGGTCC 1485
Query 2582 TTGGAAAAGCCGGGGTGGGAAAAAGTGCTACTATAAATTCCATTTTGGGAAACCAGATTG 2641
|||||||| |||| ||||| ||||||||||| ||||||||||| ||||| | |||| |
Sbjct 1486 TTGGAAAATCCGGAGTGGGGAAAAGTGCTACGATAAATTCCATCTTGGGTGATCAGAAGG 1545
Query 2642 CGTCCATTGATGCTTTTGGGCTC-TCAACCACTTCGGTTAGAGAAATTTCTGGAACGGTG 2700
| || ||| |||| ||| | | || |||||||||||| |||||||||||||||||||
Sbjct 1546 CATCTATTCATGCATTTCAAC-CATCCACCACTTCGGTTCTAGAAATTTCTGGAACGGTG 1604
Query 2701 AATGGTGTCAAGATTACCTTTATTGATACTCCGGGTTTGAAGTCTGCTGCGATGGATCAA 2760
|||||||||| | || | || || |||||||| || |||||| |||| |||||||||
Sbjct 1605 GGTGGTGTCAAGGTCACAATCATCGACACTCCGGGCTTAAAGTCTTCTGCCATGGATCAA 1664
Query 2761 AGTACAAATGCAAAAATGTTGTCCTCTGTAAAGAAGGTAATGAAGAAGTGTCCCCCTGAT 2820
|| | ||| | ||||||||||| || || |||||| |||||||||||||||||||||||
Sbjct 1665 AGCGCCAATTCCAAAATGTTGTCTTCAGTGAAGAAGATAATGAAGAAGTGTCCCCCTGAT 1724
Query 2821 ATTGTACTATATGTAGATCGTCTTGACACCCAGACCAG-GGACTTGAACAATTTGCCCTT 2879
|| || || ||||| ||||||||||| | |||| || || |||| ||||| |||||||
Sbjct 1725 ATGGTTCTTTATGTTGATCGTCTTGATGCTCAGAATAGAGG-CTTGGACAATATGCCCTT 1783
Query 2880 GCTAAGGACGATTACTGCTTCTCTTGGTACATCCATATGGAAAAACGCTATAGTGACATT 2939
|||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||| |||
Sbjct 1784 GCTAAGGACGATTACTGCGTCTCTTGGTTCATCCATATTGAAAAACGCCATAGTGTTATT 1843
Query 2940 GACCCATGC-GGCTTCTGCCCCTCCTGATGGCCCATCTGGCACCCCATTGAGCTATGATG 2998
||||||||| || || |||||||||||||||||| | || ||| || |||||||||||||
Sbjct 1844 GACCCATGCTGG-TTGTGCCCCTCCTGATGGCCCGTATGACACTCCTTTGAGCTATGATG 1902
Query 2999 TGTTTGTAGCGCAGTGCTCACATATTGTGCAACAGTCTATAGGACAGGCTGTTGGAGATC 3058
|||||||| ||||||||||||||||| ||||||||||| ||||| || ||||| ||||
Sbjct 1903 CGTTTGTAGAACAGTGCTCACATATTGTTCAACAGTCTATTGGACATGCCGTTGGTGATC 1962
Query 3059 TACGCTTGATGAATCCAAGTCTGA-TGAATC-CAGTTTCACTTGTTGAGAATCACCCCTT 3116
|||||||||| || ||||| | | |||| | |||||| |||||||||||||| |||||
Sbjct 1963 TACGCTTGATAAACCCAAG-ATTAGTGAA-CAAAGTTTCTCTTGTTGAGAATCATCCCTT 2020
Query 3117 GTGTAGGAAGAACCGGGAGGGAGTGAAGGTTCTCCCGAAT 3156
||||||||||||||||||||||||||||||||||| |||
Sbjct 2021 ATGTAGGAAGAACCGGGAGGGAGTGAAGGTTCTCCCAAAT 2060
Score = 296 bits (160), Expect = 9e-79
Identities = 202/222 (91%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 3235 CCTCAAGAACCATTGGACCATCGTAAAGTATTTGGTTTCCGAGTTAGATCCCCGCCTCTC 3294
|||| |||| ||||||||||||||||| |||||||||||| |||| | | | |||||||
Sbjct 2088 CCTCTAGAAGCATTGGACCATCGTAAATTATTTGGTTTCCAAGTTCCAGCGCTGCCTCTC 2147
Query 3295 CCTTACTTGTTGTCTTGGCTGTTGCAGTCCCGTGCACATCCTAAGCTCCCTGGAGACCAA 3354
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 2148 CCTAACTTGTTGTCTTGGCTGTTGCAGTCCCGTGCACATCCTAAGCTCCCTGCAGATCAA 2207
Query 3355 GGTGGTGATAGTGTTGACTCTGATATCGAAATTGATGATGTGTCTGATTCTGAGCAGGAA 3414
|||||||||||||| || |||| |||||||||||||| ||| |||||||||||||||||
Sbjct 2208 GGTGGTGATAGTGTCGATTCTGCTATCGAAATTGATG-TGT--CTGATTCTGAGCAGGAA 2264
Query 3415 GATGGGGAAGATGATGAGTATGACCAGCTGCCACCATTTAAG 3456
|||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2265 GATGGGGAAGATGACGAGTATGAACAGCTGCCACCATTTAAG 2306
Score = 202 bits (109), Expect = 2e-50
Identities = 273/349 (78%), Gaps = 23/349 (7%)
Strand=Plus/Plus
Query 3882 CCAAGTCACCAAGGACAAGAAAGAGTTCAACATTCATCTGGACTCCTCTGTGTCTGCTAA 3941
|||||| |||||||||||||||||||||||||||||||| ||||||||| | | ||||||
Sbjct 2546 CCAAGTGACCAAGGACAAGAAAGAGTTCAACATTCATCTAGACTCCTCTATCTGTGCTAA 2605
Query 3942 GCACGGGGAGAATGGATCCACCATGGCAGGG-TTCGATATTCAG--AA-TGTAGGCAAGC 3997
||||||||| |||||||| |||||||||||| || | ||| ||| || || || ||| |
Sbjct 2606 GCACGGGGACAATGGATCTACCATGGCAGGGCTT-GTTATCCAGGGAAGTG-AG-CAA-C 2661
Query 3998 AGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAGAATTTGAGGAAGAACAAGACAA 4057
|| ||| | | | ||||||||||||||||||||| | ||||| ||| ||| |
Sbjct 2662 TTATGT-ATACCT--TAAAAGGAGAAACCAAATTCAAGAACTCGAGGAGGAATGAGATGA 2718
Query 4058 CTGTTGGAGGG-TCAGTGACATTCTTGGGAGAGAACAT-CGCCACTGGGGTCAAACTCGA 4115
|| |||||||| | |||||||||||| || | ||| || | ||| ||| ||||||||||
Sbjct 2719 CTCTTGGAGGGCT-AGTGACATTCTTTGGTGGGAAAATTC-CCAGTGGTCTCAAACTCGA 2776
Query 4116 GGACCAAATAGCACTGGGGAAAA-GGTTGGTGCTTGTGGGCA--GCACTGGGACAATGCG 4172
| | || || || || ||||||| || | || || ||||| | ||| ||||| | | |
Sbjct 2777 GAAACAGATCGC-CTTGGGAAAACGGGTCGTCCTCGTGGGAAATGCA--GGGACCACGAG 2833
Query 4173 ATCACAGGGAGATTCGGCCTATGGTGCGAA-CCTCGAGGTCAGGCTTAG 4220
||||| ||||| || || |||| | ||| ||| ||||||||||||||
Sbjct 2834 GTCACAAGGAGACTCAGCTTATGAAG-GAAACCTTGAGGTCAGGCTTAG 2881
> Ahg936070 jgi|Araly1|936070|scaffold_500261.1
Length=479
Score = 359 bits (194), Expect = 1e-97
Identities = 271/304 (89%), Gaps = 22/304 (7%)
Strand=Plus/Plus
Query 3802 GACCATGACTGTGGATATGACGGCGTCAATGCAGAACACAGTCTTGCTCTAGCTAGCCGG 3861
||| ||||||||||||||||||||||||||||||||||||| | || || || | ||
Sbjct 120 GACAATGACTGTGGATATGACGGCGTCAATGCAGAACACAG---T-CT-TA-CT-GTTGG 172
Query 3862 T-TCCCTGCCACAGCTACTGTCCAAGTCACCAAGGACAAGAAAGAGTTCAACATTCATCT 3920
| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 173 TATCCCTGCCACAGCTACTGTTCAAGTCACCAAGAACAAGAAAGAGTCCAACATTCATCT 232
Query 3921 GGACTCCTC-TGTGTCTGCTAAGCACGGGGAGAATGGATCCACCATGGCAGGGTTCGATA 3979
||||||| | | |||||||||||||||| ||||||||||||||||||||| || |
Sbjct 233 GGACTCCCCAT-TGTCTGCTAAGCACGGCGAGAATGGATCCACCATGGCA-GG---G--- 284
Query 3980 TTCAGAATGTAGGCAAGCAGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAGAATT 4039
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 285 --C---ATGTAGGCAAGCAGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAGAACT 339
Query 4040 TGAGGAAGAACAAGACAACTGTTGGAGGGTCAGTGACATTCTTGGGAGAGAACATCGCCA 4099
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 340 TGAGGAACAACAAGACAACTGTTGGAGGGTCAGTGACATTCTTAGGAGAGAACATCGCCA 399
Query 4100 CTGG 4103
||||
Sbjct 400 CTGG 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 179822032425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5