BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02520.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1 1465 0.0
Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1 1096 0.0
> Ahg490313 jgi|Araly1|490313|fgenesh2_kg.6__3447__AT4G02520.1
Length=966
Score = 1465 bits (793), Expect = 0.0
Identities = 928/989 (94%), Gaps = 26/989 (3%)
Strand=Plus/Plus
Query 1 TTCTGTATAAATACCTTCATTACTTGTGTCTTATTTCATCACCTTCACCTTCAACATCAA 60
|||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTCTGTATAAATTCCATCACTACTTGTGTCTTATTTCACCACCTTCACCTTCAACATCAA 60
Query 61 ACATCACAtttcttcctcttttctctcttttttctcAGTCTTCAAAGAGTTTCTTAGTAA 120
|||||||| |||| || |||||||||||||||||||||||||||
Sbjct 61 ACATCACA---------------TCTC---TTACTCAGTCTTCAAAGAGTTTCTTAGTAA 102
Query 121 CCCAAATCAATGGCAGGTATCAAAGTTTTCGGACACCCAGCTTCCATTGCCACCAGGAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 -CCAAATCAATGGCAGGTATCAAAGTTTTCGGACACCCAGCTTCCATTGCCACCAGGAGA 161
Query 181 GTCCTCATCGCCCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCATGTCGAACTCAAA 240
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 162 GTCCTCATCGCCCTCCACGAGAAGAACCTCGACTTTGAGCTCGTTCATATCGAACTCAAA 221
Query 241 GACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGTCAGGTTCCAGCC 300
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 222 GACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGGACAAGTTCCAGCC 281
Query 301 TTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCAC 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TTTGAAGATGGAGACGTCAAGCTCTTCGAATCAAGAGCGATTACTCAGTACATAGCTCAC 341
Query 361 CGA-TATGAAAACCAAGGAACCAACCTTCTCCAAACCGACTCCAAGAACATATCTCAGTA 419
| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 342 C-AGTATGAAAACCAAGGAACCAACCTTCTCCAAGCCGACTCCAAGAACATATCTCAGTA 400
Query 420 CGCAATCATGGCCATTGGAATGCAAGTAGAAGATCACCAGTTCGACCCAGTGGCTTCAAA 479
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 401 CGCAATCATGGCCATTGGAATGCAAGTAGAAGCTCATCAGTTCGACCCAGTGGCTTCAAA 460
Query 480 GCTTGCTTTTGAACAAATATTCAAGTCCATCTACGGCTTGACCACAGACGAAGCCGTTGT 539
|||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 461 GCTTGCTTGGGAACAATTATTCAAGTCCATCTACGGCTTGACCACAGACCAAGCCGTTGT 520
Query 540 TGCAGAAGAGGAGGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAGGCTAGGCTCAAGGA 599
||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 521 TGCAGAAGAAGAAGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAGGCTAGGTTGAAGGA 580
Query 600 GTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACTGATCTTCACCACATTCCCGCGAT 659
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 581 GTTCAAGTACTTGGCTGGTGACACTTTCACTTTGACTGATCTTCACCACATTCCCGCGAT 640
Query 660 TCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGTCCACGTGTCAATGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 641 TCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGTCCACGTGTCAACGA 700
Query 720 GTGGGTGGCTGAAATCACCAAGAGGCCAGCTTCCGAGAAGGTTCAGTGAGAAATTTCTAA 779
|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 701 GTGGGTGGCTGAGATCACCAAGAGGCCAGCTTCAGAGAAGGTTCTGTGAGAAATTTCTAA 760
Query 780 AAGGAAAATATGGTTTTGCTTCAGTCACAGTAATAATGCT-AAGATTAAATAAGCGGCTT 838
|||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 761 AAGGAAAAAATGGTTTTGCTTCAGTCACAGTAATAATGCTTAA-ATTAAATAAGCGGCTA 819
Query 839 TCTCATTGCCCAATTTCTCAGTACTTTCTTTCTGTTGTATCCTCTGTTTTC-TTTCAGTT 897
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 820 CCTCATTGCCCAATTTCTCAGTATTTTCTTTCTGTTGTATCCTCTGTTTTTGTTTCAGTT 879
Query 898 ATGTGAGTGTGTGTGTATGCTCTTGAGAGTATCTTTGGCAAAAACTATTTATCTAATCTT 957
|||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 880 ATGTGAGTGTGTGT--ATGTTCTTGAGAGTATCTTTGGCAAAAACTATTTATATAATCTT 937
Query 958 CAAGCTATTCTAAAATAAATCAATTAGTT 986
|||||| ||||||||||||||||||||||
Sbjct 938 CAAGCTCTTCTAAAATAAATCAATTAGTT 966
> Ahg484202 jgi|Araly1|484202|fgenesh2_kg.5__194__AT4G02520.1
Length=931
Score = 1096 bits (593), Expect = 0.0
Identities = 690/736 (94%), Gaps = 10/736 (1%)
Strand=Plus/Plus
Query 50 TTCAACATCAAACATCACAtttcttcctcttttctctcttttttctcAGTCTTCAAAGAG 109
|||||||||| ||||||||| |||| ||||||| |||| |||||||| ||||||||||||
Sbjct 35 TTCAACATCAGACATCACATCTCTTACTCTTTTGTCTC-TTTTTCTCGGTCTTCAAAGAG 93
Query 110 TTTCTTAGTAACCCAAATCAATGGCAGGTATCAAAGTTTTCGG-ACACCCAGCTTCCA-T 167
||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 94 TTTCTTAGTAA-CCAACTCAATGGCAGGTATCAAAGTTTTCGGAAC-CCCAGCTTCCACT 151
Query 168 TGCCACCAGGAGAGTCCTCATCGCCCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCA 227
| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 152 T-CAACCAGGAGAGTCCTCATCGCTCTCCACGAGAAAAACCTCGACTTTGAGCTCGTTCA 210
Query 228 TGTCGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGG 287
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TGTTGAACTCAAAGACGGTGAGCACAAGAAGGAGCCTTTCCTCTCCCGCAACCCTTTTGG 270
Query 288 TCAGGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCA 347
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TCAAGTTCCAGCCTTTGAAGATGGAGACCTCAAGCTCTTCGAATCAAGAGCGATTACTCA 330
Query 348 GTACATAGCTCACCGATATGAAAACCAAGGAACCAACCTTCTCCAAACCGACTCCAAGAA 407
|||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 331 GTACATAGCTCACCGATACGAAAACCAAGGAACCAACCTTCTCCAAGCTGACTCCAAGAA 390
Query 408 CATATCTCAGTACGCAATCATGGCCATTGGAATGCAAGTAGAAGATCACCAGTTCGA-CC 466
|||| ||||||| |||||||||||||||||| || ||||||||| ||| |||||||| ||
Sbjct 391 CATAGCTCAGTATGCAATCATGGCCATTGGACTGGAAGTAGAAGCTCATCAGTTCGATCC 450
Query 467 CAGTGGCTTCAAAGCTTGCTTTTGAACAAATATTCAAG-TCCATCTACGGCTTGACCACA 525
| ||||||||||||||||||| |||||| ||| |||| || ||||| ||||||||||||
Sbjct 451 C-GTGGCTTCAAAGCTTGCTTGGGAACAAGTATACAAGCTC-ATCTATGGCTTGACCACA 508
Query 526 GACGAAGCCGTTGTTGCAGAAGAGGAGGCTAAGTTAGCCAAGGTCCTTGATGTCTACGAG 585
||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 509 GACCAAGCCGTTGTTGCAGAAGAAGAAGCTAAGTTGGCCAAGGTCCTTGATGTCTACGAG 568
Query 586 GCTAGGCTCAAGGAGTTCAAGTATTTGGCTGGTGAAACTTTCACTTTGACTGATCTTCAC 645
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 569 GCTAGGCTCAAGGAGTTCAAGTATTTGGCTGGTGACACTTTCACTTTGACCGATCTTCAC 628
Query 646 CACATTCCCGCGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGT 705
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CACATTCCCGTGATTCAATACCTGCTCGGAACTCCCACCAAGAAGCTCTTCACCGAGCGT 688
Query 706 CCACGTGTCAATGAGTGGGTGGCTGAAATCACCAAGAGGCCAGCTTCCGAGAAGGTTCAG 765
||||||||||| |||||||| ||||| |||||||| |||||||||||| |||||||||||
Sbjct 689 CCACGTGTCAACGAGTGGGTCGCTGAGATCACCAACAGGCCAGCTTCCCAGAAGGTTCAG 748
Query 766 TGAGAAATTTCTAAAA 781
||||||||||||||||
Sbjct 749 TGAGAAATTTCTAAAA 764
Score = 206 bits (111), Expect = 3e-52
Identities = 156/176 (89%), Gaps = 10/176 (6%)
Strand=Plus/Plus
Query 818 CTAAGATTAAATAAGCGGCTTTCTCATTGCCCAATTTCTCAGTACTTTC-----TTTCTG 872
|||| |||||| |||||||| ||||||| || | ||||||||||||| ||||||
Sbjct 759 CTAAAATTAAACAAGCGGCTGCCTCATTGTCC-A--TCTCAGTACTTTCTTTAATTTCTG 815
Query 873 TTGTATCCTCTG-TTTTCTTTCAGTTATGTGAGTGTGTGT-GTATGCTCTTGAGAGTATC 930
|||||||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 816 TTGTATCCTCTGTTTTTGTATCAGTTATGTGAGTGTGTGTCGTATGTTCTTGAGAGTATC 875
Query 931 TTTGGCAAAAACTATTTATCTAATCTTCAAGCTATTCTAAAATAAATCAATTAGTT 986
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 876 TTTGGCAAAAACTATTTATATAATCTTCAAGCTCTTCTAAAATAAATCAATTAGTT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5