BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02570.1
Length=2747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943470 jgi|Araly1|943470|scaffold_604014.1 3650 0.0
Ahg311398 jgi|Araly1|311398|fgenesh1_pm.C_scaffold_1000178 1598 0.0
Ahg947963 jgi|Araly1|947963|scaffold_704192.1 514 1e-144
Ahg338392 jgi|Araly1|338392|fgenesh1_pg.C_scaffold_2000491 353 3e-96
Ahg338398 jgi|Araly1|338398|fgenesh1_pg.C_scaffold_2000497 139 1e-31
> Ahg943470 jgi|Araly1|943470|scaffold_604014.1
Length=2258
Score = 3650 bits (1976), Expect = 0.0
Identities = 2158/2249 (96%), Gaps = 0/2249 (0%)
Strand=Plus/Plus
Query 249 CTTGAAAAGTTGTTTGTCAACATGGAGCGCAAGACTATTGACTTGGAGCAAGGATGGGAC 308
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTGGAAAGTTGTTTGTCAACATGGAGCGCAAGACTATTGACTTGGAGCAAGGATGGGAC 60
Query 309 TATATGCAGACTGGAATTACTAAGCTGAAACGGATTCTGGAAGGATTGAATGAGCCAGCA 368
|||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TATATGCAGACTGGGATTACCAAGCTGAAACGGATTCTGGAAGGATTGCCTGAGCCAGCA 120
Query 369 TTTGACTCTGAGCAATATATGATGCTTTATACGACTATCTACAACATGTGCACCCAGAAA 428
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 121 TTTGACTCTGAGCAATATATGATGCTCTACACGACTATCTACAACATGTGCACCCAGAAA 180
Query 429 CCTCCTCATGATTACTCACAGCAGCTTTATGACAAGTATCGGGAAGCATTTGAGGAATAT 488
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 181 CCTCCTCATGATTACTCACAGCAGCTTTACGACAAGTACCGTGAAGCATTTGAGGAATAT 240
Query 489 ATTAACTCAACAGTTTTGCCTGCGTTGAGGGAGAAGCATGATGAGTTTATGCTGCGGGAG 548
||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 241 ATTAACTCAACAGTTTTGCCTGCTTTGAGGGAGAAGCATGATGAATACATGCTGCGGGAG 300
Query 549 CTATTTAAAAGATGGTCAAACCATAAAGTAATGGTCAGATGGCTATCCCGCTTCTTCTAC 608
|| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 CTGGTTAAAAGATGGTCGAACCATAAAGTTATGGTTAGATGGCTATCCCGCTTCTTCTAC 360
Query 609 TACCTTGACCGTTACTTCATTGCTCGGAGATCACTTCCACCACTGAATGAAGTTGGCCTG 668
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TATCTTGACCGTTACTTCATTGCTCGGAGATCACTTCCACCACTGAATGAAGTTGGCTTG 420
Query 669 ACATGCTTCCGTGACCTGGTTTATAATGAGCTACATTCTAAGGTCAAACAAGCTGTAATA 728
|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 421 ACATGCTTCCGTGACCTGGTTTATAATGAGTTGCATTCTAAGGTCAAAGAAGCTGTAATA 480
Query 729 GCTCTTGTTGATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCCCTGCTGAAAAACGTA 788
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 481 GCACTTGTTGATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCTCTACTGAAAAACGTA 540
Query 789 TTAGATATCTATGTAGAGATTGGAATGGGGCAGATGGAGAGGTATGAAGAAGATTTTGAA 848
|||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 541 TTAGATATCTATGTCGAGATTGGAATGGGACAGATGGAAAGATATGAAGAAGATTTTGAA 600
Query 849 AGCTTCATGCTTCAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATTCAG 908
|||||||||||||| ||||| || || || ||||||||||||||||||||||||||||||
Sbjct 601 AGCTTCATGCTTCAGGATACATCATCTTACTATTCTCGCAAGGCATCAAGCTGGATTCAG 660
Query 909 GAAGATTCTTGCCCTGATTACATGTTGAAGTCTGAAGAATGTCTAAAGAAGGAGAGGGAG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAGATTCTTGCCCTGATTACATGTTGAAGTCTGAAGAATGTCTAAAGAAGGAGAGGGAG 720
Query 969 AGAGTGGCTCACTACCTACACTCAAGCAGTGAGCCAAAGCTGGTTGAGAAAGTACAACAT 1028
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGGTGACTCACTACCTTCACTCAAGCAGTGAGCCAAAGCTGGTTGAGAAAGTACAACAT 780
Query 1029 GAATTGCTGGTTGTGTTTGCAAGTCAGCTTCTAGAAAAAGAACACTCAGGGTGCCGTGCA 1088
||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 781 GAATTGCTGGTAGTGTATGCAAGTCAACTTCTAGAAAAAGAGCACTCAGGGTGCCGTGCA 840
Query 1089 TTGCTAAGAGATGACAAGGTGGATGATCTCTCCAGGATGTACAGGCTTTACCATAAAATT 1148
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGCTAAGAGATGACAAGGTCGATGATCTCTCCAGGATGTACAGGCTTTACCATAAAATT 900
Query 1149 TTGCGAGGCTTGGAACCTGTTGCAAACATCTTTAAGCAGCATGTCACAGCAGAGGGTAAC 1208
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTGCGAGGTTTGGAACCTGTTGCAAACATCTTTAAGCAGCATGTCACAGCAGAGGGTAAC 960
Query 1209 GCTCTTGTCCAACAGGCCGAAGACACGGCTACTAATCAGGTTGCAAATACTGCTAGCGTC 1268
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 961 ACTCTTGTCCAACAGGCCGAAGACACGGCTACAAATCAGGCTGCAAATACTGCTAGCGTC 1020
Query 1269 CAGGAACAGGTTCTTATCAGAAAAGTGATTGAACTTCATGATAAATACATGGTATATGTC 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAGGAACAGGTTCTTATCAGAAAAGTGATTGAACTTCATGATAAATACATGGTATATGTC 1080
Query 1329 ACCGAGTGTTTCCAGAACCACACCCTCTTCCATAAGGCTTTGAAAGAGGCATTTGAGATT 1388
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACAGAATGTTTCCAGAACCACACCCTCTTCCATAAGGCTTTGAAAGAGGCATTTGAGATT 1140
Query 1389 TTTTGTAACAAAACGGTTGCTGGAAGTTCAAGTGCAGAACTACTTGCAACATTTTGCGAC 1448
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 TTCTGTAACAAAACGGTAGCTGGAAGTTCAAGTGCAGAACTACTTGCAACTTTTTGCGAC 1200
Query 1449 AATATTCTCAAAAAGGGGGGAAGTGAAAAGCTGAGTGATGAAGCTATCGAAGATACGCTT 1508
||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||
Sbjct 1201 AATATTCTCAAGAAGGGGGGAAGTGAAAAACTGAGTGACGAAGCTATTGAAGATACACTT 1260
Query 1509 GAGAAGGTTGTCAAATTGCTTGCATACATAAGTGACAAGGATCTTTTCGCTGAGTTCTAC 1568
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1261 GAGAAGGTGGTCAAATTGCTTGCATACATAAGTGACAAGGATCTTTTTGCTGAGTTCTAC 1320
Query 1569 AGGAAGAAGCTGGCCCGTAGGCTCTTATTTGATCGCAGTGCTAATGATGATCATGAGAGA 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1321 AGGAAGAAGCTGGCCCGTAGGCTCTTATTTGATCGCAGTGCTAATGATGATCATGAGCGA 1380
Query 1629 AGTATCCTGACAAAGCTCAAGCAACAATGTGGTGGACAGTTTACTTCTAAGATGGAGGGC 1688
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGTATCCTTACAAAACTCAAGCAACAATGTGGTGGACAGTTTACTTCTAAGATGGAGGGC 1440
Query 1689 ATGGTGACGGATTTGACACTGGCAAGAGAAAACCAAAACAGTTTCGAGGATTATCTAGGC 1748
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1441 ATGGTGACGGATTTGACATTGGCTAGAGAAAACCAAAACAGTTTCGAGGATTATCTAGGC 1500
Query 1749 AGTAACCCTGCTGCAAACCCAGGGATTGACTTGACCGTCACTGTTCTTACCACTGGTTTC 1808
| |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 1501 AATAACCCTGCTGCAAACCCTGGGATTGATTTGACTGTCACTGTTCTTACCACTGGTTTC 1560
Query 1809 TGGCCAAGTTACAAATCATTTGACATAAATCTACCCAGTGAAATGATCAAGTGTGTTGAA 1868
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1561 TGGCCTAGTTACAAATCATTTGACATAAATCTACCTAGTGAAATGATCAAGTGTGTTGAA 1620
Query 1869 GTCTTCAAAGGGTTTTATGAAACGAAAACGAAACACAGGAAGCTTACGTGGATCTATTCA 1928
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1621 GTCTTCAAAGGGTTTTATGAAACGAAAACGAAACACAGGAAGCTTACCTGGATCTATTCA 1680
Query 1929 CTGGGAACTTGTCACATAAACGGGAAGTTTGATCAAAAGGCCATCGAGTTAATAGTGTCT 1988
||||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 1681 CTGGGAACTTGTCACATCAACGGGAAGTTTGACCAAAAGTCCATCGAGTTAATTGTGTCT 1740
Query 1989 ACTTACCAGGCTGCTGTGCTTCTACTCTTTAACACAACTGACAAGTTAAGTTACACTGAG 2048
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1741 ACTTACCAGGCTGCTGTGCTTCTACTCTTCAACACAACTGACAAGTTAAATTACACTGAG 1800
Query 2049 ATCTTGGCTCAACTGAACCTAAGCCATGAAGATCTAGTTAGGTTGCTTCATTCCTTGTCA 2108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 ATCTTGGCTCAACTAAACCTAAGCCATGAAGATCTAGTTAGGTTGCTTCATTCCTTGTCA 1860
Query 2109 TGTGCTAAGTACAAGATACTCCTTAAGGAGCCAAACACCAAGACTGTCTCCCAGAATGAT 2168
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1861 TGTGCTAAGTACAAGATTCTCCTTAAGGAGCCAAGCACCAAGACTGTCTCCCAGACTGAT 1920
Query 2169 GCCTTTGAGTTCAACTCCAAATTCACCGATAGAATGCGCAGAATCAAGATCCCTCTTCCC 2228
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1921 GTCTTTGAGTTCAACTCCAAATTCACCGATAGGATGCGCAGAATCAAGATCCCTCTTCCC 1980
Query 2229 CCAGTTGATGAAAGGAAGAAAGTCGTTGAAGATGTCGATAAAGACAGAAGATATGCAATT 2288
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1981 CCAGTTGATGAAAGGAAGAAAGTCGTTGAAGATGTCGATAAAGACAGACGCTATGCAATT 2040
Query 2289 GATGCTGCCATTGTCAGGATCATGAAGAGCAGGAAAGTATTGGGACATCAACAACTTGTT 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2041 GATGCTGCCATTGTCAGGATCATGAAGAGCAGGAAAGTATTGGGACATCAACAGCTTGTT 2100
Query 2349 TCTGAGTGTGTTGAGCAACTTAGCCGAATGTTCAAGCCTGATATCAAAGCGATCAAGAAG 2408
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2101 TCTGAGTGTGTTGAGCAACTTAGCCGAATGTTCAAGCCTGATATCAAAGCAATCAAGAAA 2160
Query 2409 CGTATGGAGGATTTAATAACCAGAGATTATTTGGAGAGGGACAAGGAGAATCCTAACATG 2468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CGTATGGAGGATTTAATAACCAGAGATTATTTGGAGAGGGACAAGGAGAATCCTAACATG 2220
Query 2469 TTTAGGTACTTGGCTTAGGGCaaaaaaaC 2497
||||||||||||||||||||||||| |||
Sbjct 2221 TTTAGGTACTTGGCTTAGGGCAAAACAAC 2249
> Ahg311398 jgi|Araly1|311398|fgenesh1_pm.C_scaffold_1000178
Length=2220
Score = 1598 bits (865), Expect = 0.0
Identities = 1802/2246 (80%), Gaps = 97/2246 (4%)
Strand=Plus/Plus
Query 291 TTGGAGCAAGGATGGGACTAT-ATGCAGACTGGAATTACTAAGCTGA-A-ACGGATTCTG 347
|||||| |||||||| || | ||| || |||| |||| ||||| | | | ||||||||
Sbjct 22 TTGGAGGAAGGATGGCCCT-TCATGGAGGCTGGTGTTACAAAGCT-ACATA-GGATTCTG 78
Query 348 GAAGGATTGAATGAGCCAGCATTTGACTCTGAGCAATATATG-ATGCTTTATACGACTAT 406
|||| |||| ||||||||||||||| || | ||||||||| || || || ||||||||
Sbjct 79 GAAGAATTGCCTGAGCCAGCATTTGAGTCGGTTCAATATATGAAT-CTGTACACGACTAT 137
Query 407 CTACAACATGTGCACCCAGAAACCTCCTCATGATTACTCACAGCAGCTTTATGACAAGTA 466
|||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 138 CTACAATATGTGTGTCCAGAAACCTCCTCATGATTTCTCACAGCAGCTTTATGATAAGTA 197
Query 467 TCG-GGAAGCATTTGAGGAATA-TATTAACTCAACAGTTTTGCCTGCGT-TGAGGGAGAA 523
||| || || | |||| || || || ||| |||||| ||||| || | | ||| ||||
Sbjct 198 TCGTGG-AGTAATTGATGATTACAATAAAC-AAACAGTGTTGCCGGC-TATAAGGAAGAA 254
Query 524 GCATGATGAGTTTATGCTGCGGGAGCTAT-TTAAAAGATGGTCAAACCATAAAGTAATGG 582
||||| ||| | ||||||| | ||||| | |||| |||||| | ||||||||||| |||
Sbjct 255 GCATGGTGAATATATGCTGAGAGAGCT-TGTTAAGAGATGGGCTAACCATAAAGTTCTGG 313
Query 583 TCAGATGGCTATCCCGCTTCTTCTACTACCTTGACCGTTACTTCATTGCTCGGAGATCA- 641
| |||||| |||||||||||||| |||| |||||||||||||| || |||||||| |
Sbjct 314 TTAGATGGTTATCCCGCTTCTTCGACTATCTTGACCGTTACTTTGTTCCTCGGAGA-AAT 372
Query 642 CTTCCACCACTGAATGA-AGTTGGCCTGACATGCTTCCGTGACCTGGTTTAT-AATGAGC 699
|||| | |||||||| | |||||| |||||| ||| || |||||||||||| || |||
Sbjct 373 CTTCTAACACTGAAT-AGTGTTGGCTTGACATCCTTTCGCGACCTGGTTTATCAA-GAGA 430
Query 700 TACATTCTAAGGTCAAACAAGCTGTAATAGCTCTTGTTGATAAAGAACGGGAGGGCGAGC 759
|||| || || | |||| | |||||| ||| ||| || |||||||||| ||||| || |
Sbjct 431 TACAGTCCAATGCCAAAGACGCTGTACTAGAACTTATTCATAAAGAACGTGAGGGTGAAC 490
Query 760 AGATTGATAGGGCCCTGCTGAAAAACGTATTAGATATCTA-TGTAGAGATTGGAATGGG- 817
|||||||||| | || ||||||||||| ||||| |||| ||| | || |||||||||
Sbjct 491 AGATTGATAGATCACTATTGAAAAACGTAATAGATGTCTATTGT-GGGAATGGAATGGGA 549
Query 818 GCAGATGG-AGAGGTATGAAGAAGATTTTGAAAGCTTCATGCTTCAAGATACTTCTTCGT 876
| |||||| | | || ||||| ||||||||||||||| ||||||||||| || | || |
Sbjct 550 G-AGATGGTA-AAATACGAAGAGGATTTTGAAAGCTTCTTGCTTCAAGATTCTGCATCTT 607
Query 877 ATTATTCTCGCAAGGCATC-AAGCTGGATTCAGGAAGATTCTTGCCCTGATTACATGTTG 935
| |||||||||||||| || ||| |||| ||||| |||||||| |||||||||||| |
Sbjct 608 ACTATTCTCGCAAGGCCTCAAAG-TGGAGCCAGGAGGATTCTTGTCCTGATTACATG-CG 665
Query 936 -AAGTCTGAAGAATGTCTAAAGA-AGGAGAGGGAGAGAGTGGCTCACTACCTACACTCAA 993
||| |||| || |||||||| | ||||| ||||||||| || ||||||| || ||||
Sbjct 666 AAAGGCTGAGGAGTGTCTAAA-ACTGGAGAAGGAGAGAGTCACTAACTACCTTCATTCAA 724
Query 994 GCAGTGAGCC-AAAGCTGGTTGAGAAAGTACAACATGAATTGCTGGTTGTGTTTGCAAGT 1052
|| |||||| ||| | ||| |||||||||| |||| ||| |||| ||| ||||||
Sbjct 725 CCACTGAGCCGAAA-TTACTTGGGAAAGTACAAAATGAGTTGTTGGTAGTGGTTGCAAAA 783
Query 1053 CAGCTTCTAGAAAAAGAACACTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGGTGGAT 1112
|||||| ||||||| || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 784 CAGCTTATAGAAAATGAGCAGTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGATGGAT 843
Query 1113 GATCTCTCCAGGATGTACAGGCTTTACCATA-AAAT-TTTGCGAGGCTTGGAACCTGTTG 1170
||||||||||||||||||| |||||| || | ||| || | ||| ||||| |||||||
Sbjct 844 GATCTCTCCAGGATGTACAAGCTTTATCA-ACCAATCCTT-CAAGGGTTGGATCCTGTTG 901
Query 1171 CAAACATCTTTAAGCAGCATGTCACAGCAGAGGGTAACGCTCTTGTCCAACAGGCCGAAG 1230
|| || | || ||||||||||| || |||||||| || || ||| || |||| |||| |
Sbjct 902 CAGACTTATTCAAGCAGCATGTTACTGCAGAGGGAAATGCCCTTATCAAACAAGCCGCCG 961
Query 1231 ACACGGCTACTAATCAGGTTGCAAATACTGCTAGCGTCCAGGAACAGGTTCTTATCAGAA 1290
|| | ||||||||||||| ||||| | ||| | |||| ||||| ||||| ||| ||||||
Sbjct 962 ACGCAGCTACTAATCAGGATGCAAGTGCTGGTGGCGTGCAGGACCAGGTGCTTGTCAGAA 1021
Query 1291 AAGTGATTGAACTTCATGATAAATACATGGTATATGTC-ACCGAGTGTTTCCAGAACCAC 1349
||| |||||| || || |||||||||||||| |||||| | |||||||| ||||| |||
Sbjct 1022 AAGAGATTGAGCTACACGATAAATACATGGTCTATGTCGA-TGAGTGTTTTCAGAAACAC 1080
Query 1350 ACCCTCTTCCATAAGGCTTTGAAAGAGGCATTTG-AGATTTTTTGTAACAAAACGGTTGC 1408
| ||||||||||||||| || ||||||||||||| || | || ||||||||||| || ||
Sbjct 1081 AGCCTCTTCCATAAGGCATTAAAAGAGGCATTTGAAG-TCTTCTGTAACAAAACAGTGGC 1139
Query 1409 TGGAAGT-TCAAGTGCAGAACTACTTGCAACATTTTGCGACAATATTCTC-A-A-AAAGG 1464
||| ||| || ||||||||| |||||||||| | ||| || ||||| ||| | | ||| |
Sbjct 1140 TGG-AGTGTCTAGTGCAGAAATACTTGCAACCTATTGTGATAATATCCTCAAGACAAAAG 1198
Query 1465 GGGGAAGTGAAAAGCTGAGTGATGAAGCTATC-GAAGA-TACGCTTGAGAAGGTTGTCAA 1522
| |||||||| ||||| ||||| |||| || | ||| | |||||||||||| || || ||
Sbjct 1199 GTGGAAGTGAGAAGCTTAGTGAAGAAGTTA-CTGAA-ATTACGCTTGAGAAAGTGGTTAA 1256
Query 1523 ATTGCTTGCATACATAAGTGACAAGGATCTTTTCGCTGAGTTCTACAGGAAGAAGCTGGC 1582
||||||| || ||||| ||||||||||||||||| ||||| ||||||||||| | ||
Sbjct 1257 GTTGCTTGTTTATATAAGCGACAAGGATCTTTTCGCCGAGTTTTACAGGAAGAAACAAGC 1316
Query 1583 CCGTAGGCTCTTATTTGATCGCAGTGCTAATGATGATCATGAGAGAAGTATCCTGACAAA 1642
|||| ||||||||||||||||||| | |||||| || || || |||||||| || |||||
Sbjct 1317 CCGTCGGCTCTTATTTGATCGCAGCGGTAATGACGAGCACGAAAGAAGTATACTTACAAA 1376
Query 1643 GCT-CAAGCAAC-AATGTGGTGGACAGTTTACTTCTAAGATGGAGGGCATGGTGACGGAT 1700
| | ||| ||| | | || || ||||||||||||||||||||||||||||||||||||
Sbjct 1377 GTTAAAAG-AACTACT-CGGGGGGCAGTTTACTTCTAAGATGGAGGGCATGGTGACGGAT 1434
Query 1701 TTGACACTGGCAAGAGAAAACCAAAACAGTTTCGAGGATTATCTAGGCAG-TAACCCTG- 1758
| ||| |||||| ||| | |||| || |||| ||||||||| ||| || || ||
Sbjct 1435 ATAACATTGGCAAAAGAGCAGCAAACCAACTTCGCTGATTATCTAT-CAGCTAGCC-TGA 1492
Query 1759 CTGCAAACCCAGGGATTGACTTGACCGTCACTGTTCTTACCACTGGTTTCTGGCCAAGTT 1818
| |||| | |||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1493 CCACAAAGCTGGGGATTGATTTGACTGTCACTGTTCTTACTACTGGTTTCTGGCCAAGTT 1552
Query 1819 ACAAATCATTTGACATAAATCTACCCAGTGAAATGATCAAGTGTGTTGAAG-TCTTCAAA 1877
||||| ||| |||| | |||||||||| ||||||| |||| |||||||||| | || |||
Sbjct 1553 ACAAAACATCTGACCTCAATCTACCCATTGAAATGGTCAACTGTGTTGAAGCTTTTAAAA 1612
Query 1878 GGGTTTTATGAAACGAA-AACGAAACACAGGA-AGCTTACGTGGATCTATTCACTGGGAA 1935
||||||| ||| || ||| |||||||||| | ||| ||||||| ||||| |||||||
Sbjct 1613 CC-TTTTATGGAAC-AATAACCAAACACAGGAGA-CTTTCGTGGATTTATTCTCTGGGAA 1669
Query 1936 CTTGTCACATAAACGGGAAGTTT-GATCAAAAGGCCATCG-AGTTAATAGTGTCTACTTA 1993
|||||||||| | |||| || ||| |||| | || | ||||| | || || || ||
Sbjct 1670 CTTGTCACATTT-CTGGAAAATTCGATAAAAAATC-ATTGGAGTTAGTCGTTTCCACCTA 1727
Query 1994 CCAGGCTGCTGTGCTTCTACTCTTTAACA-CAACTGACA-AGTTAAGTTACACTGAGATC 2051
||||||||| |||||| | ||||| |||| | | || | | || || |||||||||||
Sbjct 1728 CCAGGCTGCGGTGCTTTTGCTCTTCAACAACG-CAGAGAGA-TTGAGCTACACTGAGATG 1785
Query 2052 TTGGCTCAACTGAACCTAAGCCATGAAGATCTAGTTAGGTTGCTTCATTC-CTTGTCATG 2110
|||| || || ||||| |||||||||||||| || ||| |||||||||| || ||||||
Sbjct 1786 TTGGAGCAGCTAAACCTTAGCCATGAAGATCTTGTCAGGCTGCTTCATTCACT-GTCATG 1844
Query 2111 TGCTAAGTACAAGATACTCCTTAAGGAGCCAAACACCAAGA-CTGTCTCCCAGAATG-AT 2168
| ||||||||||| || | ||||| |||| | | || | |||| | || | ||
Sbjct 1845 CGGGAAGTACAAGATTCTTATAAAGGAACCAATGTCGA-GAACCATCTCTAA-AACGGAT 1902
Query 2169 GCCTTTGAGTTCAACTCCAAATTCACCGATA-GAATGCGCAGAATCAAGATCCCTCTTCC 2227
| ||||| ||||||||||| |||||||||| || || | ||||| | | | ||||| ||
Sbjct 1903 ACGTTTGAATTCAACTCCAAGTTCACCGATAAGA-TGAGGAGAATTAGGGTGCCTCTGCC 1961
Query 2228 CCCAGTTGATGAAAGGAAGAAAGTCGTTGAAGATGTCGATAAAGACAGAAGATATGCAAT 2287
||| | ||||| ||||||||||| ||||||||||| |||||||| ||| | ||||||||
Sbjct 1962 TCCAATGGATGAGAGGAAGAAAGTTGTTGAAGATGTTGATAAAGATAGACGCTATGCAAT 2021
Query 2288 TGATGCTGC-CATTGT-CAGGATCATGAAGAGCAGGAAAGTATTGGGACATCAACAACTT 2345
||||| || | |||| | |||||||||||||||| ||||| ||||| |||||||| ||
Sbjct 2022 AGATGCAGCTC-TTGTTC-GGATCATGAAGAGCAGAAAAGTGTTGGGGCATCAACAG-TT 2078
Query 2346 -GTTTCTGAGTGTGTTGAGCAACTTAGCCGAATGTTCAAGCCTGATATCAAAGC-GATCA 2403
|| ||||| ||||||||||| |||||| |||||||||||||||||| |||| ||| |
Sbjct 2079 AGTCTCTGAATGTGTTGAGCATCTTAGCAAAATGTTCAAGCCTGATAT-AAAGATGATAA 2137
Query 2404 AGAAGCGTATGGAGGATTTAATAACCAGAGATTATTTGGAGAGGGACAAG-GAGAATCCT 2462
|||| || || ||||| || || | ||||||||||||||||||||| | | || |||||
Sbjct 2138 AGAAACGGATTGAGGACTTGATCAGCAGAGATTATTTGGAGAGGGATA-GCGAAAATCCC 2196
Query 2463 AACATGTTT-AGGTACT-TGGCTTAG 2486
|||| ||| | ||| | ||||||||
Sbjct 2197 AACAC-TTTCAAGTA-TGTGGCTTAG 2220
> Ahg947963 jgi|Araly1|947963|scaffold_704192.1
Length=1148
Score = 514 bits (278), Expect = 1e-144
Identities = 679/870 (78%), Gaps = 38/870 (4%)
Strand=Plus/Plus
Query 393 CTTTATACGACTATCTACAACATGTGCACCCAGAAACCTCCTCATGATTACTCACAGCAG 452
||||| ||||| |||||| | ||||||||||| ||| | || ||||||||||| |||
Sbjct 135 CTTTACACGACAATCTACGATATGTGCACCCA-AAA---AC-CA-GATTACTCACATCAG 188
Query 453 CTTTATGACAAGTATCGGGAAGCATTTGAGGAATATATTAACTC-AACAGTTTTGCCTGC 511
|||||||| ||||||| ||| | |||| || |||| || | | ||| || |||||| |
Sbjct 189 CTTTATGAGAAGTATCTTCAAGTAATTGAAGATTATACTATC-CAAACGGTGTTGCCTTC 247
Query 512 GTTGAGGGAGAAGCATGATGAGTTTATGCTGCGGGAGCTAT-TTAAAAGATGGTCA-AAC 569
|| ||||||||||||||||| |||||| ||||| | |||| || ||| | |||
Sbjct 248 TTTAAGGGAGAAGCATGATGAACATATGCTAATAGAGCT-TGTTAAGAGGTGG-AATAAC 305
Query 570 CATAAAGTAATGGTCAGATGGCTATCCCGC-TTCTTCTACTACCTTGACCGTTACTTCAT 628
|||||| | |||| | || || || | || ||| | || | ||||||||||| |
Sbjct 306 CATAAAATTTTGGTTACATTTTTAACCAACATT-TTCCATTATATCGACCGTTACTTGGT 364
Query 629 TGCTCGGAGATCA-CTTCCACCACTGA-ATGAAGTTGGCCTGACATGCTTCCGTGACCTG 686
| |||||| | | ||||| |||| | |||||||||| |||||||||||| |||||||
Sbjct 365 TCCTCGGA-CTAATATTCCATCACT-AGATGAAGTTGGATTGACATGCTTCCTTGACCTG 422
Query 687 GTTTATAATGAGCTACATTCTAAGGTCA-AACAAGCTGTAATAGCTCTTGTTGATAAAGA 745
|||||| |||| | || || | || || || |||||||| |||| ||| || |||||||
Sbjct 423 GTTTATTCTGAGATGCAATCCATGGCCACAA-AAGCTGTAGTAGCACTTATTCATAAAGA 481
Query 746 ACGGGAGGGCG-AGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAGATATCTATGTA 803
||| ||||||| || ||||||||||||| || | |||| |||||||||||| |||||||
Sbjct 482 ACGTGAGGGCGAAG-AGATTGATAGGGCACTAG-TGAAGAACGTATTAGATGTCTATGTG 539
Query 804 GAGATTGGAATGGGGCA-GA-TGGAGAGGTATGAAGAAGATTTTGAAAGCTTCATGCTTC 861
|| | ||| || ||| | | | || | |||||||| ||||||||||||||||||||||
Sbjct 540 GATAATGGGAT-GGGAACCACT-GAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTC 597
Query 862 AAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATTC-AGGAAGATTCTTGC 920
|||||||| |||| || |||||||||||||| ||||| ||||| | |||| ||||||||
Sbjct 598 AAGATACTGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGAT-CGAGGAGGATTCTTGT 656
Query 921 CCTGATTACATGTTGAAG-TCTGAAGAATGTCTAAAGAAGGAGAGGGAGAGAGTGGCTCA 979
|||||||||||| | ||| | ||| || |||||||||| ||||||||||||||| ||||
Sbjct 657 CCTGATTACATGATAAAGGT-TGAGGAGTGTCTAAAGAGGGAGAGGGAGAGAGTCACTCA 715
Query 980 CTACCTACACTCAAGCAGTGAGCC-AAAGCTGGTTGAGAAAGTACAACATGAATTGCTGG 1038
||| || || ||||||| ||| || ||| || ||||||||||||||| || ||||| |||
Sbjct 716 CTATCTCCATTCAAGCACTGAACCCAAA-CTAGTTGAGAAAGTACAAAATCAATTGTTGG 774
Query 1039 TTGTGTTTGCAAGTCAGCTTCTAGAAAAAGAACACTCAGGGTGCCGTGCATTGCTAAGAG 1098
| || |||||| | | ||||||||| || || ||||||||| |||||||||||||||
Sbjct 775 TAATGGTTGCAAAAAACCGTCTAGAAAATGAGCATTCAGGGTGCTGTGCATTGCTAAGAG 834
Query 1099 ATGACAAGGTGGATGATCTCTCCAGGATGTACAGGCTTTACCATAAAATTT-TGCG-AGG 1156
|||||||| | |||||||||| ||||||||||| ||||| ||| ||| | | |||
Sbjct 835 ATGACAAGAAGAATGATCTCTCTAGGATGTACAGTCTTTATCATCCAATCCCT-CATAGG 893
Query 1157 CTTGGAACCTGTTGCAAACATCTTTAAGCAGCATGTCACAGCAGAGGGTAACGCTCTTGT 1216
|| |||| | ||||| || | || || ||||| | || | |||||| || || ||| |
Sbjct 894 -TTAGAACGTATTGCAGACTTATTCAAAAAGCATATTACTGAAGAGGGGAATGCCCTTAT 952
Query 1217 CCAACAGGCCGAAGACACGGCTACTAATCA 1246
| |||| || || ||| | ||||||||||
Sbjct 953 CAAACAAGCTGACGACGCAACTACTAATCA 982
> Ahg338392 jgi|Araly1|338392|fgenesh1_pg.C_scaffold_2000491
Length=1215
Score = 353 bits (191), Expect = 3e-96
Identities = 485/623 (78%), Gaps = 36/623 (6%)
Strand=Plus/Plus
Query 325 TTACTAAGCTGA-AACGGATTCTGGAAGGATTGAATGAGCCAGCATTTGACTCTGAGCAA 383
|||| ||| ||| || ||||||| |||||| | ||| ||| ||||||| ||| | |||
Sbjct 59 TTACCAAGATGATAA-GGATTCTAGAAGGAGAGCCTGAACCACCATTTGAATCTAACCAA 117
Query 384 TATATG-ATGCTTTATACGACTATCTACAACATGTGCACCCAGAAACCTCCTCATGATTA 442
|||||| || ||||| |||||| ||||| ||||||||||||||| | | ||||||
Sbjct 118 TATATGAAT-CTTTACACGACTGCCTACAGTATGTGCACCCAGAAA----C-C-TGATTA 170
Query 443 CTCA-CAGCAGCTTTATGACAAGTATCG-GGAA-GCATTTGAGGAATATATTAACTC-AA 498
|||| || ||| ||||||| || ||||| | || | | |||| || ||| || || | ||
Sbjct 171 CTCAGCA-CAGATTTATGATAAATATCGTGAAATG-A-TTGAAGATTATGTT-ACACAAA 226
Query 499 CAGTTTTGCCTG-CGTTGAGGGAGAAGCATGATGAGTTTATGCTGCGGGAGCTAT-TTAA 556
| || ||||| | |||| ||||||||||||||||| | |||||| | ||||| | ||||
Sbjct 227 CGGTGTTGCC-GTCGTTAAGGGAGAAGCATGATGAATATATGCTAAGAGAGCT-TGTTAA 284
Query 557 AAGATGGTCA-AACCATAAAGTAATGGTCAGATGG-CTATCCCGCTTCTTCTACTACCTT 614
|| ||| | ||||||||||| |||| |||||| ||| | | |||||| | || |
Sbjct 285 GAGGTGG-GATAACCATAAAGTTCTGGTTAGATGGTTTAT-CAGATTCTTCAATTATATA 342
Query 615 GACCGTTACT-TCATTGCTCGGAGATCACTTCCACCACTGAATGAAGTTGGCCTGACATG 673
|||||||||| | || ||||||| | ||| | |||||| ||||||||| |||||||
Sbjct 343 GACCGTTACTAT-GTTATTCGGAGAAAAGTTCAATCACTGAGGGAAGTTGGCTTGACATG 401
Query 674 CTTCCGTGACCTGGTTTATAATGAGCTACATTCTAAGGTCAAACAAGCTGTAATAGCTCT 733
||| ||||||||||| |||| | || || | || || | |||||||||| || ||
Sbjct 402 TTTCAACAACCTGGTTTATCGTGAGATGCAGTCCACGGCCACAGAAGCTGTAATTGCACT 461
Query 734 TGTTGATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAG 792
| || |||||||||| |||||||| ||||||||||||| || | ||||||| |||||||
Sbjct 462 TTTTCATAAAGAACGTGAGGGCGAACAGATTGATAGGGAACTAG-TGAAAAATGTATTAG 520
Query 793 ATATCTATGTAGAGATTGGAATGGGGCA-GATGGAGAGGTATGAAGAAGATTTTGAAAGC 851
|| |||||||||||| ||| | ||| | ||| | | |||||||| ||||||||||||
Sbjct 521 ATGTCTATGTAGAGAATGGGCT-GGGAACTATGAAAAAATATGAAGAGGATTTTGAAAGC 579
Query 852 TTCATGCTTCAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAA-GCTGGATTCA-GG 909
|||||||||||||||||| | || || |||||||||||||| |||| | ||||| || ||
Sbjct 580 TTCATGCTTCAAGATACTGCCTCATACTATTCTCGCAAGGCGTCAAAG-TGGAT-CAAGG 637
Query 910 AAGATTCTTGCCCTGATTACATG 932
|||||||| |||| |||||||
Sbjct 638 GGGATTCTTGTCCTGCTTACATG 660
> Ahg338398 jgi|Araly1|338398|fgenesh1_pg.C_scaffold_2000497
Length=543
Score = 139 bits (75), Expect = 1e-31
Identities = 157/196 (80%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 739 ATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCCCT-GCTGAAAAACGTATTAGATATC 797
|||||||||| || ||||| || |||||||| | || | ||| |||| || || || ||
Sbjct 149 ATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAG-TGAGAAACATAATAAATGTC 207
Query 798 TATGTAGAGATTGGAATGGG--GCAGATGGAGAGGTATGAAGAAGATTTTGAAAGCTTCA 855
||||| |||| ||| ||||| || | | | |||||||| ||||||||||||||||
Sbjct 208 TATGTTGAGAATGGGATGGGATCCATA-AAACA-ATATGAAGAGGATTTTGAAAGCTTCA 265
Query 856 TGCTTCAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATTC-AGGAAGAT 914
|||||||||||||| |||| || |||| | ||||||| ||||| ||||| | |||| |||
Sbjct 266 TGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGAT-CGAGGAGGAT 324
Query 915 TCTTGCCCTGATTACA 930
||||| ||||||||||
Sbjct 325 TCTTGTCCTGATTACA 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103643556645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5