BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02580.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490304 jgi|Araly1|490304|fgenesh2_kg.6__3438__AT4G02580.1 1681 0.0
Ahg905352 jgi|Araly1|905352|Al_scaffold_0003_2480 174 1e-42
> Ahg490304 jgi|Araly1|490304|fgenesh2_kg.6__3438__AT4G02580.1
Length=1096
Score = 1681 bits (910), Expect = 0.0
Identities = 1046/1108 (94%), Gaps = 23/1108 (2%)
Strand=Plus/Plus
Query 1 AATCCTGCGCCA-G-G---TGA-TAGTGAGATACCGAGTCTAGCTCCTTGGTTTCTCTGC 54
|||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCCTGCGCCAGGTGATTTGATTAGTGAGATACCGAGTCTAGCTCCTTGGTTTCTCTGC 60
Query 55 TTCTCCTTCTCTCTCAGATCaaaaaaaaCCTTCGTGTGCGTCTCTCG-TC-CTCTAAATT 112
|||||||| ||||||||||| |||||| |||||||||||||||||| || || ||| ||
Sbjct 61 TTCTCCTTGTCTCTCAGATC--AAAAAAGCTTCGTGTGCGTCTCTCGTTCGCT-TAAGTT 117
Query 113 GTCGAAAATGCTGGCTAGGCTCGCTGCGAAGCGTCTTCTCGAGATCCGTCAAGTTTTCCG 172
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 118 GTCGAAAATGCTGGCTCGGCTCGCCGCTAAGCGTCTTCTCGAGATCCGTCAAGTTTTCCG 177
Query 173 TCAACCAACCTCTCAGGTGA-CTCGTAGCTTATCGACGGCCTTAAACTACCATCTGGATT 231
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 178 CCAACCAACCTCTCAGGT-ATCTCGTAGCTTATCGACGGCCTTAAATTACCATCTGGATT 236
Query 232 CTCCTGATAACAAACCCGATCTTCCATGGGAGTTTTCAGAGGCTAACCAATCTAAGGTTA 291
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 237 CTCCTGATAACAAACCCGATCTTCCATGGGAGTTTTCTGAGGCAAACCAATCTAAGGTTA 296
Query 292 AGGAGATTCTCTCTTACTATCCATCCAATTACAAGCAGTCCGCAGTTATTCCTCTCCTAG 351
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 297 AGGAGATACTCTCTTACTATCCATCCAATTACAAGCAGTCCGCAGTTATTCCTCTTCTAG 356
Query 352 ATCTTGCACAACAGCAGAATGGAGGCTGGCTCCCTGTTTCAGCAATGAATGCGGTTGCTA 411
||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||
Sbjct 357 ATCTTGCACAACAGCAGCATGGAGGCTGGCTCCCTGTTTCTGCTATGAATGCGGTTGCTA 416
Query 412 AAGTTATAGAAGTTGCCCCTATCCGTGTTTATGAGGTTGCAACATTTTACTCAATGTTCA 471
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAGTTATTGAAGTTGCTCCTATCCGTGTTTATGAGGTTGCAACATTTTACTCAATGTTCA 476
Query 472 ACAGAGCAAAGGTTGGAAAGTATCACCTTCTAGTTTGTGGCACAACACCTTGCATGATCC 531
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 477 ACAGGGCAAAGGTTGGAAAGTACCACCTTCTAGTTTGTGGCACAACACCATGCATGATCC 536
Query 532 GTGGTTCACGAGACATCGAATCAGCTTTGCTAGACCATTTGGGAGTGAAACGCGGTGAGG 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 537 GTGGTTCACGAGACATCGAATCAGCTTTGCTAGACCATTTGGGAGTGAAACGCGGTGAAG 596
Query 592 TCACAAAGGATGGTTTGTTCTCTGTTGGAGAGATGGAGTGCATGGGATGTTGTGTTAATG 651
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 597 TCACTAAGGATGGTTTGTTCTCTGTTGGAGAGATGGAATGCATGGGTTGTTGTGTTAATG 656
Query 652 CACCCATGATCACTGTGGCTGACTATTCCAATGGATCAGAAGGATATACATATAACTATT 711
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 657 CACCCATGATCACTGTGGCAGACTATTCGAATGGATCAGAAGGATATACATATAACTATT 716
Query 712 TCGAAGATGTTACACCTGAGAAAGTCGTAGAAATTGTTGAAAAGCTGAGAAAAGGAGAAA 771
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 TCGAAGATGTCACACCTGAGAAAGTCGTAGAGATTGTTGAAAAGCTGAGAAAAGGAGAAA 776
Query 772 AGCCACCGCATGGAACTCAGAACCCGAAGAGGATCAAGTGTGGACCAGAAGGAGGGAATA 831
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 777 AGCCACCGCATGGAACTCAGAACCCAAAGAGGATCAAGTGCGGACCAGAAGGAGGAAATA 836
Query 832 AGACACTGCTTGGTGAGCCTAAGCCACCACAATTCCGTGATCTTGATGCATGCTAAAGCT 891
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 837 AGACACTGCTTGGTGAGCCTAAGCCACCGCAATTCCGTGATCTTGATGCATGCTAA-GCT 895
Query 892 AAGTTCTGTTTGCCGCAGTTTTATGTGGTTCAATAACGCAAAGGCTATAGCGATGTATGT 951
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 896 AAGTTCTGTTCGCCGCAGTTTTATGTGGTTCAATAACGCAAAGGCTATAGCGATGT-T-T 953
Query 952 TTGACGCCTGTACCGCATCAAATTGAGTTTGCATACTCTTTGTAGTCTTCTTGGTTTTGG 1011
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 --GACGCCTGTA--GCATCAAATTGAGTTTGCATACTCTTTGTAGTCTTCTTGGTTT-GG 1008
Query 1012 AATTTAGACCCATTTTAAACAAATTGCCAAA-TCATCTTCGTTTATTATTATCTCACT-C 1069
||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||| |
Sbjct 1009 AATTTAGACCCATTTTAAACAAATTGCCAAAATCATCCTCGTTTATTACGATCTCACTTC 1068
Query 1070 TAAGATTCATGTGAAATTGTAATAAAAA 1097
|||||| |||||||||| |||||||||
Sbjct 1069 CAAGATTTATGTGAAATTCTAATAAAAA 1096
> Ahg905352 jgi|Araly1|905352|Al_scaffold_0003_2480
Length=312
Score = 174 bits (94), Expect = 1e-42
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 288 GTTAAGGAGATTCTCTCTTACTATCCATCCAATTACAAGCAGTCCGCAGTTATTCCTCTC 347
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 GTTAAGGAGATACTCTCTTACTATCCATCCAATTACAAGCAGTTTGCAGTTATTCCTCTT 60
Query 348 CTAGATCTTGCACAACAGCAGAATGGAGGCTGGCTCCCTGTTTCAGCAATGAATG 402
||||||||||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct 61 CTAGATCTTGCACAACAGCAGCATGGAGGCTGGCTCCCTGTTTCTGCTATGAATG 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5