BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02590.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490301 jgi|Araly1|490301|fgenesh2_kg.6__3435__AT4G02590.2 1875 0.0
Ahg470281 jgi|Araly1|470281|fgenesh2_kg.1__235__AT1G03040.1 667 0.0
> Ahg490301 jgi|Araly1|490301|fgenesh2_kg.6__3435__AT4G02590.2
Length=1396
Score = 1875 bits (1015), Expect = 0.0
Identities = 1112/1158 (96%), Gaps = 10/1158 (1%)
Strand=Plus/Plus
Query 76 aaaaaaa-TCTGTAGCTTTCGCATGTAAATCTCTCTTTGAAGG-TTCCTAACTCGTTAAT 133
||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 38 AAAAAAAGTCTGTAGCTTTCGCATGTAAATCTCTCCTTGAAGGCTT-CTAACTCGTTAAT 96
Query 134 CGTAACTCACAGTGACTCGTTCGAGTCAAAGTCTCTGTCTTTAGCTC-AAACCATGGCTA 192
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 97 CGTAACTCACAGTGACTCGTTCGAGTCAAAGTCTCTGTTTTTATCTCAAAACCATGGCTA 156
Query 193 GTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAA 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAA 216
Query 253 TCCTCGGCCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGTTTATCTGGAGTTGACGGAG 312
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 217 TCCTCGGTCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGTTTATCTGGCGTTGATGGTG 276
Query 313 GATTAGGTGGTGGAGCACCGCCTATGATGCTGCAGTTGGGTTCCGGAGAAGAAGGAAGTC 372
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 277 GATTAGGTGGCGGAGCACCGCCGATGATGCTGCAGTTGGGTTCCGGAGATGAAGGAAGTC 336
Query 373 ACATGGGTGGCTTAGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTGG 432
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 337 ATATGGGTGGCTTAGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTAG 396
Query 433 GGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGACATGGAA 492
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 397 GGTTAAGTCTTGATCAAGGGAAAGGACCTGGCTTTCTTAGACCTGAAGGAGGACATGGAA 456
Query 493 GTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTT 552
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GTGGCAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTT 516
Query 553 TCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGCCTACTTCAATCC 612
|||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||
Sbjct 517 TCCACGGGCAGCCTATGCAACAGCCAGCACCATCGGCACCACATCAGCCTACATCAATCC 576
Query 613 GTCCC-AGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACATAGCATCGCTGAGCGG 671
| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 577 G-CCCTAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACACAGCATCGCTGAGCGG 635
Query 672 CTACGTAGAGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTTGTACCTACTGTG 731
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 636 CTACGTAGGGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTCGTACCTACTGTG 695
Query 732 AACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGG 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGG 755
Query 792 CTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTT 851
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 756 CTCCAAGTTAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGCGCGGTTGCTCCACTT 815
Query 852 GTTACTGATATGCCTCTTTCATCATCAGTTGAGGATGAAACGGGTGAGGGTGGAAGGACT 911
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 816 GTTACTGATATGCCTCTTTCATCATCAGTTGAGGATGAAACGGGTGATGGTGGAAGGACT 875
Query 912 CCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTG 971
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CCGCAACCCGCATGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTG 935
Query 972 ATGGAAGAGAACGTTGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATG 1031
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 ATGGAAGAAAATGTTGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATG 995
Query 1032 CCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCTCCGGATACATCTTCAGTGGTC 1091
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 996 CCAATCTCATTGGCAATGGCAATTTACCATTCTCAGCCTCCGGATACATCTTCAGTGGTC 1055
Query 1092 AAGCCTGAGAAC-AATCCTCCACAGTAGGATTTCTGCAATAAA-GAGTTTGTACAGCTAA 1149
||||| |||| | |||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1056 AAGCCAGAGA-CGAATCCTCCACAGTAGGATTTGTGCAATAAAAGAGTTTGTACAGC-AA 1113
Query 1150 TCCAACTGTCCAACATGGGTTTTTCTTCTGCTCTAATGACTCTGGTTTCTTCTCTCCTCT 1209
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1114 TCCAACGGTCCAACATGGGTTTTGCTTCTGCTCTATTGACTCTGGTTTCTTCTCTACTCT 1173
Query 1210 CTCACCCACTTGAAAGGT 1227
| ||||||||||||||||
Sbjct 1174 CACACCCACTTGAAAGGT 1191
Score = 298 bits (161), Expect = 9e-80
Identities = 190/203 (94%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 1344 AGGTGGACTTTGATGAAAGCAACTTTTTGTTTTCAAGACTTTAGTGGGAGGTTGAGGAAG 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AGGTGGACTTTGATGAAAGCAACTTTTTGTTTTCAAGACTTTAGTGGGAGGTTGAGGAAG 1247
Query 1404 GAGCTTGAAG-GGTGTTATTTATTAGTAGTAGTAGTAGTGGGAAGTTGTGGGACCTTGTT 1462
||||||| || ||| ||||| ||||||||||||||| | |||| || ||||||||| |||
Sbjct 1248 GAGCTTGCAGTGGTATTATT-ATTAGTAGTAGTAGT-G-GGGAGGT-GTGGGACCTCGTT 1303
Query 1463 GAGTTGTGTTCAAATTGAAGAAAAAACAAGTATTTGTAATTTGTCACCCCTTGTATTATT 1522
||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1304 GAGTTATGTTCAAATTGAAGAAAAAT-AAGTATTTGTAATTTGTCATCCCTTGTATTATT 1362
Query 1523 ATTTATTTTGTATGACTTTGGAG 1545
|||||||||||||||||||||||
Sbjct 1363 ATTTATTTTGTATGACTTTGGAG 1385
Score = 73.1 bits (39), Expect = 6e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 15 TCTGTCTTCTTCGTCCTCATTCGTTTTAAAGCATCAAAA 53
|||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTGTCTTCTTCGTCCTCATTCGTTTTAAAGCATCAAAA 39
> Ahg470281 jgi|Araly1|470281|fgenesh2_kg.1__235__AT1G03040.1
Length=1369
Score = 667 bits (361), Expect = 0.0
Identities = 763/946 (81%), Gaps = 72/946 (8%)
Strand=Plus/Plus
Query 195 AACAACCCTCACGACAACCTTTCTGA-CCAAACTCCTTCTGATGATTTCTTCGAGCAAAT 253
|||||||| || || | | | || || || | ||||| | || |||||||| ||||| ||
Sbjct 185 AACAACCCACATGATAGCATCTCCGATCC-ATCTCCTACCGACGATTTCTTTGAGCAGAT 243
Query 254 CCTC-GGCCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGT-TTATCTGGAGTTGACGGA 311
|||| ||| |||| |||||||| || ||||||| | ||| || |||||| ||| ||||
Sbjct 244 CCTCGGGCTTTCC-AACTTCTCTGCGTCTTCTGGTTCTGGTCTT-TCTGGAATTGGCGGA 301
Query 312 GGATT-AG-GTG-GT-GGAGCACCGCCTATGATGCTGCAG-TTGGGTTC-CG-GA-GAA- 362
||||| || | | || || |||| || |||||||| ||| || ||||| | || |||
Sbjct 302 GGATTAAGCG-GCGTGGGTCCACCTCCGATGATGCTTCAGCTT-GGTTCAGGCGACGAAG 359
Query 363 -GAAGGA-AGTCACATGGGTGGC-TTAGGAGGAAGTGGACCAACT-GGGTTTCACAATCA 418
||| | | ||| ||||||| | || |||||| ||||||| | |||||||| |||||
Sbjct 360 GGAATCATAATCATATGGGTGCCATT-GGAGGAGGTGGACC-TGTAGGGTTTCATAATCA 417
Query 419 GATGTTTCCTTTGGGGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGA 478
||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 418 GATGTTTCCGTTGGGATTAAGTCTTGATCAAGGGAAAGGACATGGCTTTCTTAAACCTGA 477
Query 479 AGG-AGGACATGGAAGTGGGAAAAGATTCTC-AGATGATGTTGTTGATAATCGATGTTCT 536
|| | ||||||| ||| ||| | ||| | |||||||||| ||||||||| |
Sbjct 478 TGGTA-TTCATGGAACTGGTAAACGTTTC-CAAGATGATGTTCTTGATAATC---G---- 528
Query 537 TCTATGAAACCTGTTTTCCACGGGCAGCCTATG-CAACAGCCACCTCCATC--GGCCCCA 593
|||||||||||||||||| |||||||| ||| | ||||||| ||||| | ||| ||
Sbjct 529 --TATGAAACCTGTTTTCCATGGGCAGCCAATGTC-ACAGCCAGCTCCACCAATGCCGCA 585
Query 594 -CATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCC 652
|| ||| | || |||| || || || ||| | |||||||| ||||| || ||||||||
Sbjct 586 TCAACAG--T-CTACAATTCGACCTAGAGTTAGGGCTAGGCGAGGTCAAGCCACTGATCC 642
Query 653 ACATAGCATCGCTGAGCGGCTACGTAGAGAAAGAATAGCAGAACGGATCAGGGCGCTGCA 712
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 643 ACATAGCATCGCTGAGAGGCTCCGTAGAGAAAGAATAGCAGAACGGATCAGGGCGTTGCA 702
Query 713 GGAACTTGTACCTACTGTGAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGA 772
||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 703 GGAACTTGTACCTACCGTTAACAAGACAGATAGGGCTGCTATGATCGATGAGATTGTGGA 762
Query 773 TTATGTAAAGTTTCTCAGGCTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGC 832
|||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 763 TTATGTTAAGTTTCTCAGGCTCCAAGTTAAGGTCTTGAGCATGAGCCGTCTTGGTGGAGC 822
Query 833 CGGTGCGGTTGCTCCACTTGTTACTGATATGCCTCTT-TCATCATCAGTTGAGGATGAAA 891
|||||| || || ||||| || ||||| ||||| || ||||||||| |||||||||||
Sbjct 823 CGGTGCTGTCGCACCACTAGTCACTGAAATGCCA-TTGTCATCATCAACTGAGGATGAAA 881
Query 892 CGGGTGAGGGTGGAAGGACTCCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTG 951
|| ||| | | | | |||||||||||||| ||||||||||| |
Sbjct 882 CGC---AGG---------C-C-GT-----G--TGGGAGAAATGGTCAAACGATGGGACAG 920
Query 952 AACGTCAAGTGGCTAAACTGATGGAAGAGAACGTTGGAGCCGCGATGCAGCTTCTT-CAA 1010
| || ||||||||||| ||||||||||| ||||||||||| |||||||||||| || |||
Sbjct 921 AGCGGCAAGTGGCTAAGCTGATGGAAGAAAACGTTGGAGCAGCGATGCAGCTT-TTGCAA 979
Query 1011 TCAAAGGCTCTTTGTATGATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCT 1070
|||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 980 TCAAAGGCTCTTTGCATAATGCCGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCA 1039
Query 1071 CCGGATACATCTTC---AGTGGTCAAGCCTGAGAACAATCCTCCAC 1113
|| || |||||||| | | ||||| || |||| ||||||||||
Sbjct 1040 CCAGACACATCTTCTTCAATCGTCAAACCAGAGATGAATCCTCCAC 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5