BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02590.1 Length=1588 Score E Sequences producing significant alignments: (Bits) Value Ahg490301 jgi|Araly1|490301|fgenesh2_kg.6__3435__AT4G02590.2 1875 0.0 Ahg470281 jgi|Araly1|470281|fgenesh2_kg.1__235__AT1G03040.1 667 0.0 > Ahg490301 jgi|Araly1|490301|fgenesh2_kg.6__3435__AT4G02590.2 Length=1396 Score = 1875 bits (1015), Expect = 0.0 Identities = 1112/1158 (96%), Gaps = 10/1158 (1%) Strand=Plus/Plus Query 76 aaaaaaa-TCTGTAGCTTTCGCATGTAAATCTCTCTTTGAAGG-TTCCTAACTCGTTAAT 133 ||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 38 AAAAAAAGTCTGTAGCTTTCGCATGTAAATCTCTCCTTGAAGGCTT-CTAACTCGTTAAT 96 Query 134 CGTAACTCACAGTGACTCGTTCGAGTCAAAGTCTCTGTCTTTAGCTC-AAACCATGGCTA 192 |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| Sbjct 97 CGTAACTCACAGTGACTCGTTCGAGTCAAAGTCTCTGTTTTTATCTCAAAACCATGGCTA 156 Query 193 GTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAA 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 GTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAA 216 Query 253 TCCTCGGCCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGTTTATCTGGAGTTGACGGAG 312 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 217 TCCTCGGTCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGTTTATCTGGCGTTGATGGTG 276 Query 313 GATTAGGTGGTGGAGCACCGCCTATGATGCTGCAGTTGGGTTCCGGAGAAGAAGGAAGTC 372 |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 277 GATTAGGTGGCGGAGCACCGCCGATGATGCTGCAGTTGGGTTCCGGAGATGAAGGAAGTC 336 Query 373 ACATGGGTGGCTTAGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTGG 432 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 337 ATATGGGTGGCTTAGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTAG 396 Query 433 GGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGACATGGAA 492 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 397 GGTTAAGTCTTGATCAAGGGAAAGGACCTGGCTTTCTTAGACCTGAAGGAGGACATGGAA 456 Query 493 GTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTT 552 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 GTGGCAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTT 516 Query 553 TCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGCCTACTTCAATCC 612 |||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||| Sbjct 517 TCCACGGGCAGCCTATGCAACAGCCAGCACCATCGGCACCACATCAGCCTACATCAATCC 576 Query 613 GTCCC-AGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACATAGCATCGCTGAGCGG 671 | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 577 G-CCCTAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACACAGCATCGCTGAGCGG 635 Query 672 CTACGTAGAGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTTGTACCTACTGTG 731 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 636 CTACGTAGGGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTCGTACCTACTGTG 695 Query 732 AACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGG 791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 AACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAGG 755 Query 792 CTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTT 851 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 756 CTCCAAGTTAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGCGCGGTTGCTCCACTT 815 Query 852 GTTACTGATATGCCTCTTTCATCATCAGTTGAGGATGAAACGGGTGAGGGTGGAAGGACT 911 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 816 GTTACTGATATGCCTCTTTCATCATCAGTTGAGGATGAAACGGGTGATGGTGGAAGGACT 875 Query 912 CCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTG 971 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 876 CCGCAACCCGCATGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTG 935 Query 972 ATGGAAGAGAACGTTGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATG 1031 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 ATGGAAGAAAATGTTGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATG 995 Query 1032 CCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCTCCGGATACATCTTCAGTGGTC 1091 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 996 CCAATCTCATTGGCAATGGCAATTTACCATTCTCAGCCTCCGGATACATCTTCAGTGGTC 1055 Query 1092 AAGCCTGAGAAC-AATCCTCCACAGTAGGATTTCTGCAATAAA-GAGTTTGTACAGCTAA 1149 ||||| |||| | |||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 1056 AAGCCAGAGA-CGAATCCTCCACAGTAGGATTTGTGCAATAAAAGAGTTTGTACAGC-AA 1113 Query 1150 TCCAACTGTCCAACATGGGTTTTTCTTCTGCTCTAATGACTCTGGTTTCTTCTCTCCTCT 1209 |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||| Sbjct 1114 TCCAACGGTCCAACATGGGTTTTGCTTCTGCTCTATTGACTCTGGTTTCTTCTCTACTCT 1173 Query 1210 CTCACCCACTTGAAAGGT 1227 | |||||||||||||||| Sbjct 1174 CACACCCACTTGAAAGGT 1191 Score = 298 bits (161), Expect = 9e-80 Identities = 190/203 (94%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1344 AGGTGGACTTTGATGAAAGCAACTTTTTGTTTTCAAGACTTTAGTGGGAGGTTGAGGAAG 1403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 AGGTGGACTTTGATGAAAGCAACTTTTTGTTTTCAAGACTTTAGTGGGAGGTTGAGGAAG 1247 Query 1404 GAGCTTGAAG-GGTGTTATTTATTAGTAGTAGTAGTAGTGGGAAGTTGTGGGACCTTGTT 1462 ||||||| || ||| ||||| ||||||||||||||| | |||| || ||||||||| ||| Sbjct 1248 GAGCTTGCAGTGGTATTATT-ATTAGTAGTAGTAGT-G-GGGAGGT-GTGGGACCTCGTT 1303 Query 1463 GAGTTGTGTTCAAATTGAAGAAAAAACAAGTATTTGTAATTTGTCACCCCTTGTATTATT 1522 ||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 1304 GAGTTATGTTCAAATTGAAGAAAAAT-AAGTATTTGTAATTTGTCATCCCTTGTATTATT 1362 Query 1523 ATTTATTTTGTATGACTTTGGAG 1545 ||||||||||||||||||||||| Sbjct 1363 ATTTATTTTGTATGACTTTGGAG 1385 Score = 73.1 bits (39), Expect = 6e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 15 TCTGTCTTCTTCGTCCTCATTCGTTTTAAAGCATCAAAA 53 ||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTGTCTTCTTCGTCCTCATTCGTTTTAAAGCATCAAAA 39 > Ahg470281 jgi|Araly1|470281|fgenesh2_kg.1__235__AT1G03040.1 Length=1369 Score = 667 bits (361), Expect = 0.0 Identities = 763/946 (81%), Gaps = 72/946 (8%) Strand=Plus/Plus Query 195 AACAACCCTCACGACAACCTTTCTGA-CCAAACTCCTTCTGATGATTTCTTCGAGCAAAT 253 |||||||| || || | | | || || || | ||||| | || |||||||| ||||| || Sbjct 185 AACAACCCACATGATAGCATCTCCGATCC-ATCTCCTACCGACGATTTCTTTGAGCAGAT 243 Query 254 CCTC-GGCCTTCCTAACTTCTCAGCCTCTTCTGCCGCCGGT-TTATCTGGAGTTGACGGA 311 |||| ||| |||| |||||||| || ||||||| | ||| || |||||| ||| |||| Sbjct 244 CCTCGGGCTTTCC-AACTTCTCTGCGTCTTCTGGTTCTGGTCTT-TCTGGAATTGGCGGA 301 Query 312 GGATT-AG-GTG-GT-GGAGCACCGCCTATGATGCTGCAG-TTGGGTTC-CG-GA-GAA- 362 ||||| || | | || || |||| || |||||||| ||| || ||||| | || ||| Sbjct 302 GGATTAAGCG-GCGTGGGTCCACCTCCGATGATGCTTCAGCTT-GGTTCAGGCGACGAAG 359 Query 363 -GAAGGA-AGTCACATGGGTGGC-TTAGGAGGAAGTGGACCAACT-GGGTTTCACAATCA 418 ||| | | ||| ||||||| | || |||||| ||||||| | |||||||| ||||| Sbjct 360 GGAATCATAATCATATGGGTGCCATT-GGAGGAGGTGGACC-TGTAGGGTTTCATAATCA 417 Query 419 GATGTTTCCTTTGGGGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGA 478 ||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| |||||| Sbjct 418 GATGTTTCCGTTGGGATTAAGTCTTGATCAAGGGAAAGGACATGGCTTTCTTAAACCTGA 477 Query 479 AGG-AGGACATGGAAGTGGGAAAAGATTCTC-AGATGATGTTGTTGATAATCGATGTTCT 536 || | ||||||| ||| ||| | ||| | |||||||||| ||||||||| | Sbjct 478 TGGTA-TTCATGGAACTGGTAAACGTTTC-CAAGATGATGTTCTTGATAATC---G---- 528 Query 537 TCTATGAAACCTGTTTTCCACGGGCAGCCTATG-CAACAGCCACCTCCATC--GGCCCCA 593 |||||||||||||||||| |||||||| ||| | ||||||| ||||| | ||| || Sbjct 529 --TATGAAACCTGTTTTCCATGGGCAGCCAATGTC-ACAGCCAGCTCCACCAATGCCGCA 585 Query 594 -CATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCC 652 || ||| | || |||| || || || ||| | |||||||| ||||| || |||||||| Sbjct 586 TCAACAG--T-CTACAATTCGACCTAGAGTTAGGGCTAGGCGAGGTCAAGCCACTGATCC 642 Query 653 ACATAGCATCGCTGAGCGGCTACGTAGAGAAAGAATAGCAGAACGGATCAGGGCGCTGCA 712 |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 643 ACATAGCATCGCTGAGAGGCTCCGTAGAGAAAGAATAGCAGAACGGATCAGGGCGTTGCA 702 Query 713 GGAACTTGTACCTACTGTGAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGA 772 ||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| || Sbjct 703 GGAACTTGTACCTACCGTTAACAAGACAGATAGGGCTGCTATGATCGATGAGATTGTGGA 762 Query 773 TTATGTAAAGTTTCTCAGGCTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGC 832 |||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||| Sbjct 763 TTATGTTAAGTTTCTCAGGCTCCAAGTTAAGGTCTTGAGCATGAGCCGTCTTGGTGGAGC 822 Query 833 CGGTGCGGTTGCTCCACTTGTTACTGATATGCCTCTT-TCATCATCAGTTGAGGATGAAA 891 |||||| || || ||||| || ||||| ||||| || ||||||||| ||||||||||| Sbjct 823 CGGTGCTGTCGCACCACTAGTCACTGAAATGCCA-TTGTCATCATCAACTGAGGATGAAA 881 Query 892 CGGGTGAGGGTGGAAGGACTCCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTG 951 || ||| | | | | |||||||||||||| ||||||||||| | Sbjct 882 CGC---AGG---------C-C-GT-----G--TGGGAGAAATGGTCAAACGATGGGACAG 920 Query 952 AACGTCAAGTGGCTAAACTGATGGAAGAGAACGTTGGAGCCGCGATGCAGCTTCTT-CAA 1010 | || ||||||||||| ||||||||||| ||||||||||| |||||||||||| || ||| Sbjct 921 AGCGGCAAGTGGCTAAGCTGATGGAAGAAAACGTTGGAGCAGCGATGCAGCTT-TTGCAA 979 Query 1011 TCAAAGGCTCTTTGTATGATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCT 1070 |||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| || Sbjct 980 TCAAAGGCTCTTTGCATAATGCCGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCA 1039 Query 1071 CCGGATACATCTTC---AGTGGTCAAGCCTGAGAACAATCCTCCAC 1113 || || |||||||| | | ||||| || |||| |||||||||| Sbjct 1040 CCAGACACATCTTCTTCAATCGTCAAACCAGAGATGAATCCTCCAC 1085 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59496962690 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5