BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02600.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895736 jgi|Araly1|895736|Al_scaffold_0006_3732 2615 0.0
> Ahg895736 jgi|Araly1|895736|Al_scaffold_0006_3732
Length=1581
Score = 2615 bits (1416), Expect = 0.0
Identities = 1530/1585 (97%), Gaps = 8/1585 (1%)
Strand=Plus/Plus
Query 143 ATGGGTCACGGAGGAGAAGGGATGTCGCTTGAATTCACTCCGACGTGGGTCGTCGCCGGA 202
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGGTCCCGGAGGAGAAGGGATGTCGCTTGAATTCACTCCGACGTGGGTCGTCGCCGCA 60
Query 203 GTTTGTACGGTCATCGTCGCGATTTCACTGGCGGTGGAGCGTTTGCTTCACTATTTCGGT 262
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTTTGTACGGTAATCGTCGCGATTTCTCTGGCGGTGGAGCGTTTGCTTCACTATTTCGGT 120
Query 263 ACTGTTCTTAAGAAGAAGAAGCAAAAACCCCTTTACGAAGCCCTTCAAAAGGTTAAAGAA 322
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACTGTTCTTAAGAAGAAGAAGCAAAAACCTCTTTACGAAGCCCTTCAAAAGGTTAAAGAA 180
Query 323 GAGCTGATGTTGTTAGGGTTTATATCGC-TGTTACTGACGGTATTCCAAGGGCTCATTTC 381
|||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||
Sbjct 181 GAGCTGATGTTGTTAGGGTTCATATC-CTTGTTACTGACGGTATTCCAAGGACTCATTTC 239
Query 382 CAAATTCTGTGTGAAAGAAAATGTGCTTATGCATATGCTTCCATGTTCTCTCGATTCAAG 441
|||||||||||| |||||| |||||||| ||||||||||||||||||| || ||||||||
Sbjct 240 CAAATTCTGTGTCAAAGAAGATGTGCTTCTGCATATGCTTCCATGTTCACTTGATTCAAG 299
Query 442 ACGAGAAGCTGGGGCAAGTGAACATAAAAACGTTACAGCAAAAGAACATTTTCAGACTTT 501
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 ACGAGAAGCTGAGGCAAATGAACATAAAAACGTTACAGCTAAAGAACATTTTCAGACTTT 359
Query 502 TTTACCTATTGTTGGAACCACTAGGCGTCTACTTGCTGAACATGCTGCTG-TGCAAGTTG 560
| | ||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||
Sbjct 360 TCTCCCTATTGTTGGAACCACTAGGCGTCTACTGGCTGAAAATGCTGCTGCTG-AAGCTG 418
Query 561 GTTACTGTAGCGAAAAGGGTAAAGTACCATTGCTTTCGCTTGAGGCATTGCACCATCTAC 620
|||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 GTTATTGTAGCCAAAAGCATAAAGTACCATTGCTTTCGGTTGAGGCATTGCACCATCTAC 478
Query 621 ATATTTTCATCTTCGTCCTCGCCATATCCCATGTGACATTCTGTGTCCTTACCGTGATTT 680
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 ATATCTTCATCTTCGTCCTCGCCATATCCCATGTGACATTCTGTGTCCTTACCGTGGTTT 538
Query 681 TTGGAAGCACAAGGATTCACCAATGGAAGAAATGGGAGGATTCGATCGCAGATGAGAAGT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGGAAGCACAAGGATTCACCAATGGAAGAAATGGGAGGATTCGATCGCAGATGAGAAGT 598
Query 741 TTGACCCCGAAACAGCTCTCAGGAAAAGAAGGGTCACTCATGTACACAACCATGCTTTTA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGACCCCGAAACAGCTCTCAGGAAAAGAAGGGTCACTCATGTACACAACCATGCTTTTA 658
Query 801 TTAAAGAGCATTTTCTTGGTATTGGCAAAGATTCAGTCATCCTCGGATGGACGCAATCCT 860
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTAAAGAGCACTTTCTTGGTATTGGCAAAGATTCAGTCATCCTCGGATGGACGCAATCCT 718
Query 861 TTCTCAAGCAATTCTATG-ATTCTGTGACGAAATCAGATTACGTGACTTTACGTCTTGGT 919
|| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTTCAAGCAATTCTATGGAT-CAGTGACGAAATCAGATTACGTGACTTTACGTCTTGGT 777
Query 920 TTCATTATGACACATTGTAAGGGAAACCCCAAGCTTAATTTCCACAAGTATATGATGCGC 979
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 TTCATTATGACACATTGTAAGGGAAACCCCAAGCTCAATTTCCACAAGTATATGATGCGC 837
Query 980 GCTCTAGAGGATGATTTCAAACAAGTTGTTGGTATTAGTTGGTATCTTTGGATCTTTGTC 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTCTAGAGGATGATTTCAAACAAGTTGTTGGTATTAGTTGGTATCTTTGGATCTTTGTC 897
Query 1040 GTCATCTTTTTGCTGCTAAATGTTAACGGATGGCACACATATTTCTGGATAGCATTTATT 1099
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTCATCTTCCTGCTGCTAAATGTTAACGGATGGCACACATATTTCTGGATAGCATTTATT 957
Query 1100 CCCTTTGCTTTGCTTCTTGCTGTGGGAACAAAGTTGGAGCATGTGATTGCACAGTTAGCT 1159
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCCTTTGCTCTGCTTCTTGCTGTGGGAACAAAGTTGGAGCATGTGATTGCACAGTTAGCA 1017
Query 1160 CATGAAGTTGCAGAGAAACATGTAGCCATTGAAGGAGACTTAGTGGTGAAACCCTCAGAT 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 CATGAAGTTGCAGAGAAACATGTAGCCATTGAAGGAGACTTAGTGGTGAAACCCTCTGAT 1077
Query 1220 GAGCATTTCTGGTTCAGCAAACCTCAAATTGTTCTCTACTTGATCCATTTTATCCTCTTC 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAGCATTTCTGGTTCAGCAAACCTCAAATTGTTCTCTACTTGATCCATTTTATCCTCTTC 1137
Query 1280 CAGAATGCTTTTGAGATTGCGTTTTTCTTTTGGATTTGGGTTACATACGGCTTCGACTCG 1339
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 CAGAATGCTTTTGAGATTGCGTTTTTCTTTTGGATTTGGGTTACATATGGCTTCGACTCG 1197
Query 1340 TGCATTATGGGACAGGTGAGATACATTGTTCCAAGATTGGTTATCGGGGTCTTCATTCAA 1399
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1198 TGCATTATGGGACAGGTGAGATACATTGTTCCAAGATTGGTTATTGGGGTCTTCATCCAA 1257
Query 1400 GTGCTTTGCAGTTACAGTACACTGCCTCTTTACGCCATCGTCTCACAGATGGGAAGTAGC 1459
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1258 GTGCTTTGCAGTTACAGTACACTGCCTCTTTACGCCATTGTCTCACAGATGGGAAGTAGC 1317
Query 1460 TTCAAGAAAGCTATATTCGAGGAGAATGTGCAGGTTGGTCTTGTTGGTTGGGCACAGAAA 1519
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1318 TTCAAGAAAGCTATATTCGAGGAGAATGTGCAGGTTGGTCTTGTAGGTTGGGCACAGAAA 1377
Query 1520 GTGAAACAAAAGAGAGACCTAAAAGCTGCAGCTAGTAATGGAGACGAAGGAAGCTCTCAG 1579
||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 GTGAAGCAAAAGAGAGACGTAAAAGCTGCAGCTAGTAATGGAAACGAAGGAAGCTCTCAG 1437
Query 1580 gctggtcctggtcctgattctggttctggttctgctcctgctgctggtcctggtGCAGGT 1639
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 GCTGGTCCTGGTCCTGATTCTGGTTCTGGTTCTGTTCCTGCTGCTGGTCCTGGTGCAGGT 1497
Query 1640 TTTGCAGGAATTCAGCTCAGCAGAGT-AACAAGAAACAACGCAGGGGACACAAACAATGA 1698
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 1498 TTTGCAGGAATTCAGCTCGGCAG-GTTAACAAGAAACAACGCAGGGGACACAAACAATGA 1556
Query 1699 GATTACACCTGATCATAACAACTGA 1723
|||||||||||| ||||||||||||
Sbjct 1557 GATTACACCTGAGCATAACAACTGA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5