BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02610.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943466 jgi|Araly1|943466|scaffold_604010.1 1303 0.0
> Ahg943466 jgi|Araly1|943466|scaffold_604010.1
Length=872
Score = 1303 bits (705), Expect = 0.0
Identities = 816/870 (94%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 13 TCTTCGAACGCTTGCAAT---GGATCTTCTCAAGACTCCTTCCTCCACGGTTGGTCTATC 69
|||| ||| ||||| ||| |||||||||||||| |||| || ||||||||||||||||
Sbjct 5 TCTTTGAAAGCTTGAAATGGAGGATCTTCTCAAGAATCCTCCCGCCACGGTTGGTCTATC 64
Query 70 AGAAACATTCGCTAGGTTAAAGTCACAAGGCAAAGTGGCTCTGATTCCATATATCACAGC 129
|||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 65 AGAAACTTTCGCTAAGTTAAAATCACAAGGCAAAGTGGCTCTGATTCCATATATCACAGC 124
Query 130 TGGTGATCCTGATCTTTCTACAACAGCGAAAGCTCTTAAAGTGCTTGATTCGTGTGGCTC 189
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||
Sbjct 125 TGGTGATCCTGATCTTTCTACTACAGCAAAAGCTCTCAAAGTGCTTGATTCGTGTGGTTC 184
Query 190 CGACATAATCGAACTCGGTGTTCCATACTCTGATCCATTAGCTGATGGTCCAGCAATCCA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CGACATAATCGAACTCGGTGTTCCATACTCTGATCCATTAGCTGATGGTCCAGCAATCCA 244
Query 250 GGCTGCTGCGAGACGTTCGTTACTTAAAGGAACCAACTTTAACTCCATTATCTCTATGCT 309
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 245 GGCTGCTGCGAGACGTTCCTTACTTAAAGGAACCAACTTTAACTCCATTATCACTATGCT 304
Query 310 TAAAGAGGTTATTCCTCAGTTATCTTGTCCAATTGCATTGTTTACATATTACAATCCAAT 369
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 305 CAAAGAGGTTATTCCTCAGTTATCTTGTCCAATTGCATTGTTTACGTATTACAATCCGAT 364
Query 370 CCTGCGACGAGGAGTAGAGAACTACATGACTGTTATAAAGAATGCTGGAGTTCATGGGCT 429
|||||| |||||| | || ||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 365 CCTGCGGCGAGGAATCGACAACTATATGACTGTTATTAAGAATGCTGGAGTCCATGGCCT 424
Query 430 TCTGGTTCCTGATGTTCCACTCGAGGAGACTGAAACTCTGCGGAACGAAGCTCGGAAGCA 489
||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 425 TCTTGTTCCTGATGTTCCACTCGAGGAAACTGAGGCTCTGCGGAACGAAGCTCGGAAGCA 484
Query 490 TCAAATTGAGCTAGTACTGCTCACAACACCCACAACTCCAAAAGAACGAATGAATGCCAT 549
|| ||||| || ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 485 TCGGATTGAACTCGTACTGCTCACAACACCCACAACCCCGAAAGAACGAATGAACGCCAT 544
Query 550 TGTTGAAGCCTCTGAAGGATTTATCTATCTCGTAAGTTCAGTAGGGGTTACTGGTACAAG 609
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGTTGAAGCATCTGAAGGATTCATCTATCTCGTAAGTTCAGTAGGGGTTACTGGTACAAG 604
Query 610 AGAGTCTGTTAACGAAAAAGTTCAATCTCTTCTACAACAAATCAAAGAGGCAACTAGCAA 669
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 605 AGAGTCTGTTAACGAAAAAGTTCAATCTCTTTTACAACAAATCAAAGAGGCAACAAGCAA 664
Query 670 GCCAGTGGCAGTTGGATTTGGCATATCAAAACCTGAGCATGTGAAACAGGTAGCTGAATG 729
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GCCAGTGGCCGTTGGATTTGGCATATCAAAACCTGAGCATGTGAAACAGGTAGCTGAATG 724
Query 730 GGGAGCAGACGGAGTCATTGTTGGTAGCGCGATGGTTAAGATCTTGGGCGAGTCTGAATC 789
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 725 GGGAGCAGATGGAGTCATTGTTGGTAGTGCGATGGTTAAGATCTTGGGCGAGTCTGAATC 784
Query 790 ACCTGAGCAAGGACTTAAGGAGCTAGAATTCTTCACTAAATCTTTGAAGTCTGCTCTTGT 849
||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 785 ACCTGTGCAAGGACTTGAGGAGCTAGAAGTCTTCACTAAATCTTTGAAGTCTGCTCTTGT 844
Query 850 CTCTTGAATACCCACAATGATTCTTTCTTA 879
||||||||||| || | |||||||| ||||
Sbjct 845 CTCTTGAATACGCA-A-TGATTCTT-CTTA 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5