BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02620.1

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327540 jgi|Araly1|327540|fgenesh1_pm.C_scaffold_6002760           660    0.0  


> Ahg327540 jgi|Araly1|327540|fgenesh1_pm.C_scaffold_6002760
Length=387

 Score =  660 bits (357),  Expect = 0.0
 Identities = 377/387 (97%), Gaps = 0/387 (0%)
 Strand=Plus/Plus

Query  79   ATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCCTCATCGCAATGATCGCCGAT  138
            ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGGCTGGGAGAGCTCCGATCCCTGCTCGCAACTCTGCCCTTATCGCAATGATCGCCGAT  60

Query  139  GAGGACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAG  198
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAGGACACTGTAGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAG  120

Query  199  ACAAATTACCTCATCGTGGATTCAAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAG  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACAAATTACCTCATCGTGGATTCAAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAG  180

Query  259  GAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATATCGCCAATATG  318
            ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  181  GAATTCTCAGCGAGGGATGATATCGCTATCATTCTTTTAAGCCAATACATTGCCAATATG  240

Query  319  ATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCC  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCC  300

Query  379  AAGGACCATCCCTATGATCCTGCTCATGATTCAGTTCTCTCTCGTGTCAAGTACCTCTTT  438
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  301  AAGGACCATCCCTATGATCCTGCTCATGATTCAGTTCTCTCCCGTGTCAAGTACCTCTTC  360

Query  439  TCTGCAGAATCTGTGTCACAGCGTTAA  465
            ||||| || ||||||||||||||||||
Sbjct  361  TCTGCTGAGTCTGTGTCACAGCGTTAA  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23293102287


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5