BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02630.1
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490296 jgi|Araly1|490296|fgenesh2_kg.6__3430__AT4G02630.1 2422 0.0
> Ahg490296 jgi|Araly1|490296|fgenesh2_kg.6__3430__AT4G02630.1
Length=1673
Score = 2422 bits (1311), Expect = 0.0
Identities = 1506/1596 (94%), Gaps = 30/1596 (2%)
Strand=Plus/Plus
Query 38 aagaagaagaagaagaagagTCAGTGAGCTGCAATGGCGGATTCTCACTCAGTCAACAAT 97
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 AAGAAGAAGAAGAACAAGAGTCAGTGAGCTGCAATGGCGGATTCTCACTCTGTCAACAAT 80
Query 98 CAGCTCTCGAGACACACTTCCATTTTTGGTTTACGTTTATGGGTTGTTCTCGGCGTTTGC 157
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 81 CAGCTCTCGAGACACACTTCTATTTTTGGTTTACGTTTATGGGTTGTTCTCGGCGTTTGC 140
Query 158 GTTGGAGCCGCGATCGTTCTTTTACTCGTTCTCATCTCTCTCTGGTTCATTTACCGACGA 217
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 141 GTTGGAGCCGCGATCGTTCTTTTACTTGTTCTCATCTCTCTCTGGTTCATTTACAGACGA 200
Query 218 AGCAACAAGAACAAATCTCTTGAGTCTTCTTCTAAATCTAACCATACGATTGTTCCCGTT 277
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGCAACAAGAACAAAGCTCTTGAGTCTTCTTCTAAATCTAACCATACGATTGTTCCCGTT 260
Query 278 GTTTCCAAGGAGATTCA---AGA--GAT-TCGACCTCCAATTCAACCCGACCCAACACCG 331
||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 261 GTTTCCAAGGAGATTCAGGTCGACCCATCTCGACCTCCAATTCAACCCGACCCAACACCG 320
Query 332 GAGCCACACCAAAACCAACAAAGAGAAGACGATAACAAAATTCACATCGAAATTGGTAAA 391
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 321 GAGCCTCACCAAAACCAAGAAAGAGAAGACGATAACAAAATTCACATCGAAATTGGAAAA 380
Query 392 GATCATCGGATTGCGTACCCGGAACGAGGAGGTTGGACTGGTTCCGGGTCTGGGTCCGGG 451
|||||||||||| ||||||||| | || || ||| |||| || |||| ||||||
Sbjct 381 GATCATCGGATTTCGTACCCGG-A-GA-GA----GGA--GGTT---GGACTGGTTCCGGG 428
Query 452 TCGGGTGATCAGGGTTTACTTATGTTGTCGGGTCCTGAGGTTTCTCATTTAGGTTGGGGA 511
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 429 TCGGGTGATCAGGGTTTACTTATGTCGTCAGGTCCTGAGGTTTCTCATTTAGGTTGGGGA 488
Query 512 CATTGGTATACGTTGAGAGAGCTTGAGGTTTCTACTAATGGATTTGCTGACGAGAATGTG 571
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 489 CATTGGTATACGTTGAGAGAGCTTGAGGTTTCTACTAATGGATTCGCTGACGAGAATGTG 548
Query 572 ATTGGACAAGGAGGTTATGGGATTGTGTATAGAGGTGTTCTTGAGGATAAATCAATGGTG 631
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATCGGACAAGGAGGTTATGGGATTGTGTATAGAGGTGTTCTTGAGGATAAATCAATGGTG 608
Query 632 GCTATAAAGAATCTGCTCAACAACAGAGGACAAGCTGAGAAAGAATTTAAAGTCGAAGTC 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GCTATAAAGAATCTGCTCAACAACAGAGGACAAGCTGAGAAAGAATTTAAAGTCGAAGTC 668
Query 692 GAAGCTATTGGACGCGTAAGACACAAGAATCTGGTGAGATTGCTTGGTTATTGCGTTGAA 751
||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 669 GAAGCCATTGGTCGAGTGAGACATAAGAATCTGGTGAGATTGCTTGGTTATTGCGTTGAA 728
Query 752 GGAGCTCATAGGATGTTAGTTTACGAGTATGTTGATAATGGGAATTTAGAACAATGGATT 811
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 729 GGAGCTCATAGGATGTTAGTTTACGAGTATGTCGATAATGGGAATTTAGAACAATGGATT 788
Query 812 CATGGTGGTGGTTTGGGGTTTAAGAGTCCTCTTACTTGGGAGATTAGGATGAACATTGTT 871
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 789 CACGGTGGTGGGTTGGGATTTAAGAGTCCTCTTACTTGGGAGATTAGAATGAACATTGTT 848
Query 872 CTTGGAACAGCCAAAGGGTTAATGTATTTACACGAAGGTCTTGAGCCTAAAGTTGTTCAC 931
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 849 CTTGGGACAGCTAAAGGGTTAATGTATTTACACGAAGGTCTCGAGCCTAAAGTTGTTCAT 908
Query 932 CGAGATATTAAATCGAGTAATATCTTGCTTGACAAGCAATGGAACTCGAAAGTTTCTGAC 991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 909 CGAGATATTAAATCGAGTAATATCTTGCTTGACAAGCAATGGAACTCGAAAGTTTCCGAC 968
Query 992 TTTGGGTTAGCTAAGCTCTTGGGTTCGGAGATGAGCTATGTGACTACTCGTGTGATGGGT 1051
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 969 TTTGGGTTAGCTAAGCTCTTGGGTTCAGAGATGAGCTATGTGACAACTCGTGTGATGGGT 1028
Query 1052 ACGTTTGGGTATGTGGCTCCTGAATACGCGAGTACCGGAATGTTGAATGAGAGGAGCGAT 1111
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1029 ACGTTTGGGTATGTGGCTCCTGAATACGCGAGTACCGGGATGTTGAATGAGAGGAGCGAT 1088
Query 1112 GTTTATAGCTTCGGTGTTCTTGTTATGGAGATTATTTCAGGGAGAAGTCCTGTGGATTAT 1171
|||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1089 GTTTATAGTTTCGGTGTTCTGGTCATGGAGATTATTTCAGGGAGGAGTCCTGTGGATTAT 1148
Query 1172 AGCCGGGCTCCGGGAGAAGTGAATCTTGTGGAATGGTTGAAGAGATTGGTGACGAATCGA 1231
|||||| ||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1149 AGCCGGCCTCTGGGGGAAGTGAATCTTGTGGAATGGTTGAAGAGAATGGTGACTAATCGA 1208
Query 1232 GATGCGGAAGGAGTTTTGGATCCGAGGATGGTTGATAAACCGTCGTTAAGGTCATTGAAG 1291
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1209 GATGCGGAAGGAGTTTTGGATCCAAGGATGGTTGATAAACCGTCGTTAAGGTCATTGAAG 1268
Query 1292 CGTACCCTTTTGGTAGCTTTAAGATGTGTTGATCCTAATGCTCAAAAGAGGCCAAAAATG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1269 CGTACCCTTTTGGTAGCTTTAAGATGTGTTGATCCTAATGCTCAAAAGAGGCCTAAAATG 1328
Query 1352 GGTCATATCATTCATATGCTTGAAGCTGAGGACTTGGTCTCTAAAGATGATCGGAGAAAC 1411
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1329 GGTCATATCATTCACATGCTTGAAGCTGAGGACTTAATCTGTAAAGATGATCGGAGAAAC 1388
Query 1412 TC---TggaggaggaggaggaggaATAGAACAGGGAAGGTCACCGCGGAGGAAGACAAAT 1468
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1389 TCCGGTGGAGGAGGAGGAGGAGGTATAGAACAGGGAAGGTCACCGCGGAGGAAGACAAAT 1448
Query 1469 GTGAATGAATCAGAGGATGAGAGTGGTAATTCTGTTCTGATCAACAATGACCAATTAGCT 1528
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1449 GTGAATGAATCAGAGGATGAGAGTGGTGATTCTGTTCTGATCAACAATGACCAATTAGCG 1508
Query 1529 TTGGAGAATAAGCAGAA-CTAGTAAAAAAGAAA-GA-A--GCTTTGGCattataattttg 1583
|||||||| ||| ||| | ||||||||| ||| || | ||||||||||||||||||||
Sbjct 1509 TTGGAGAAGAAGGAGAGTC-AGTAAAAAAAAAAAGAGAAAGCTTTGGCATTATAATTTTG 1567
Query 1584 tattactatttttagaa-gttttttcttgtgtgtgt 1618
| ||||||||||| ||| ||||||| || |||||||
Sbjct 1568 T-TTACTATTTTT-GAAAGTTTTTTTTTTTGTGTGT 1601
Score = 121 bits (65), Expect = 2e-26
Identities = 74/78 (95%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 1666 TGTGTGTAGATTCTTGTAATTTTGCAATAATTAAAACTGGGGATTGCTTGAAAAATATAT 1725
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1597 TGTGTGTAGATTCTTGTAATTTTGCAATAATTAAAAATGGGGATTGCTTGAAAAATATCT 1656
Query 1726 ATATGGTTTGttt-tttt 1742
||||||||| ||| ||||
Sbjct 1657 ATATGGTTT-TTTGTTTT 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5