BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02640.2 Length=1523 Score E Sequences producing significant alignments: (Bits) Value Ahg490295 jgi|Araly1|490295|fgenesh2_kg.6__3429__AT4G02640.2 1834 0.0 > Ahg490295 jgi|Araly1|490295|fgenesh2_kg.6__3429__AT4G02640.2 Length=1467 Score = 1834 bits (993), Expect = 0.0 Identities = 1232/1340 (92%), Gaps = 45/1340 (3%) Strand=Plus/Plus Query 1 AAGAAGAATCAGAAAGTGAAAA-AGAGAGCGAGCGATGAACAGTATCTTCTCCATTGACG 59 |||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||| Sbjct 1 AAGAAGAATCAGAAAGTGAAAAGAGAAAGAGAGCCATGAACAGTATCTTCTCCATTGACG 60 Query 60 ATTTCTCCGATCCTTTCTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCTAAGC 119 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 ATTTCTCCGATCCTTTTTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCCAAGC 120 Query 120 CTGTTACGGCGGATGAAGTTAGCCAGAGTCAACCGGAATGGACTTTCGAGATGTTTCTCG 179 ||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 121 TTGTTACGGCTGATGAAGTCAGCCACAGTCAACCCGAATGGACTTTCGAGATGTTTCTCG 180 Query 180 AAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGGTAACAACAACAACGCGATCG 239 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 181 AAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGG-----A-AACAACGCGATCG 234 Query 240 TCGGTGTTTCTTCGGCGCAATCTCTTCCTTCTGTTTCCGGACAGAATGATTTCGAGGATG 299 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 235 TCGGTGTTTCGTCGGCGCAATCTCTTCCTTCTGTTTCTGGACAGAACGATTTCGAGGATG 294 Query 300 ATAGTCGATTTCGTGATCGCGATTCGGGAAATTTGGATTGTGCTGCTCCCATGACGACGA 359 ||||||||||||| |||||||||||||| |||| ||||||||||||| | | |||||| Sbjct 295 ATAGTCGATTTCGCGATCGCGATTCGGGGAATTGGGATTGTGCTGCT-GC-T-CCGACGA 351 Query 360 AGACGGTGATTGTTGATTCCGATGA-T-T-ATCGTCGTGTTCTTAAGAACAAGCTTGAGA 416 |||||||||| ||||||||||||| | | ||| ||||||||||||| | |||||||||| Sbjct 352 CGACGGTGATTATTGATTCCGATGATTATCATCATCGTGTTCTTAAGGATAAGCTTGAGA 411 Query 417 CTGAGTGCGCTACTGTTGTTTCTCTTCGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTA 476 ||||||||| | || || || ||||||||||||||||||||||||||||||||| Sbjct 412 CTGAGTGCG---C---TG---CTGTTAGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTA 462 Query 477 GTTCTCCAGAAACTCAACTTCAACCAGTTCAATCCAGTCCTCTTA--C-TCAAGGTTCTT 533 ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| Sbjct 463 GTTCTCCAGAAACTCAATTTCAACCAGTTCAATCCAGTCCTCTTACTCATCAAGGTTCTT 522 Query 534 TGATGACCCCAGGAGAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGaaaaaaaCTG 593 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 TAATGACCCCAGGAGAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGAAAAAAACTG 582 Query 594 GTGTATCAATGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGAGGACC 653 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 583 GTGTACCAACGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGATGACC 642 Query 654 TTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAA 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 TTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAA 702 Query 714 GGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAA 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 GGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAA 762 Query 774 GTGACCTCGAAACACAGGTTAATGATCTAAAAGGTGAGCATTC-ATCACTTCTTAAACAA 832 |||| |||||||||||||||||||| ||||| ||||| ||||| | |||| ||||| ||| Sbjct 763 GTGATCTCGAAACACAGGTTAATGAGCTAAAGGGTGAACATTCGA-CACTCCTTAAGCAA 821 Query 833 CTGAGCAACATGAATCACAAGTATGACGAGGCTGCTGTTGGCAATAGAATACT-AAAGGC 891 |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| | Sbjct 822 CTGAGCAACATGAATCACAAGTATGATGAAGCTGCTGTTGGCAATAGAATACTTAAAG-C 880 Query 892 TGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCGTGAAGAGAGTAAC 951 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 881 TGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCATGAAGAGAGTAAC 940 Query 952 AGGAATGAATCCGATGCTTCTCGGAAGATCAAGTGGACATAACAACAACAACAGAATGCC 1011 |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 941 AGGAATGAATCCGATGCTTCTCGGGGGATCAAGTGGACATAACAACAACA---GAATGCC 997 Query 1012 AATAACTGGTAACAACAGGATGGATTCTTCTAGCATTATTCCAGCTTATCAACCACACTC 1071 | ||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 998 ATTAACTGGTAACAAAAGGATGGATTCTTCTAGCACTATTCCAGCTTTTCAACTACACTC 1057 Query 1072 AAACCTAAACCATATGTCAAA-CCAAAACATCGGGATCCCAACCATTCTACCTCCAAGAC 1130 ||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||| Sbjct 1058 AAACCTAAACCATATGTCAAATCCTAA-CATTGGGATCCCAACCATTCTACCTCCAAGAC 1116 Query 1131 TCGGAAACAATTTCG--C-TGCTCC-TCC--A---TCCCAAACCAGCTCTCCCTTGCAGA 1181 ||||||||||||| | | | |||| ||| | ||||||||||||||||| ||||||| Sbjct 1117 TCGGAAACAATTTTGTTCCTCCTCCATCCCTAAACTCCCAAACCAGCTCTCCGTTGCAGA 1176 Query 1182 GAATTAGAAATGGGCAAAATCACCATGTTACTCCAAGCGCCAACCCGTATGGCTGGAATA 1241 |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 1177 GAATAAGAAATGGGCAAAATCACCATGTTGCTCCAGGCGCCAACCCGTATGGCTGGACTA 1236 Query 1242 CCGAACCTCAGAACGA-TTCAGCATGGCCGAAAAAATGCGTGGACTGATCAAACAAGAAG 1300 | |||||||||||||| || |||||||||||||||||||| |||||||| |||| |||| Sbjct 1237 CTGAACCTCAGAACGAATT-AGCATGGCCGAAAAAATGCGGGGACTGATGAAACTTGAAG 1295 Query 1301 CGGGTTTCGCACTATATTAA 1320 || ||||| | ||||||||| Sbjct 1296 CGAGTTTCACGCTATATTAA 1315 Score = 233 bits (126), Expect = 2e-60 Identities = 155/167 (93%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 1349 TATTAAGTTACGAATCATGAGAAAACATCTTGTGAAAATACAGTCTCATGGCTtatatat 1408 |||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1310 TATTAAGTTACGAATCATGAGAAAACAT-TTGTGAAAATACAGTCTCATGGC-------T 1361 Query 1409 atatataAGCTCTGTCTTATAACATTACAAGATTCTTATTTGAGAATCGTCTTTCTATTT 1468 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1362 -TATATAAGCTCTGTCTTATAACATTACAAGATTCTTATTTGAGAATCGTCTTTCTATCT 1420 Query 1469 ATAGCTAATAACAGAGTGTATATCTGTTTTTATCCAATTTTAAAAAA 1515 |||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1421 ATAGCTAATAACAGAGTG-ATATCTGTTTTTATCAAATTTTAAAAAA 1466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57021096765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5