BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02640.2
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490295 jgi|Araly1|490295|fgenesh2_kg.6__3429__AT4G02640.2 1834 0.0
> Ahg490295 jgi|Araly1|490295|fgenesh2_kg.6__3429__AT4G02640.2
Length=1467
Score = 1834 bits (993), Expect = 0.0
Identities = 1232/1340 (92%), Gaps = 45/1340 (3%)
Strand=Plus/Plus
Query 1 AAGAAGAATCAGAAAGTGAAAA-AGAGAGCGAGCGATGAACAGTATCTTCTCCATTGACG 59
|||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||
Sbjct 1 AAGAAGAATCAGAAAGTGAAAAGAGAAAGAGAGCCATGAACAGTATCTTCTCCATTGACG 60
Query 60 ATTTCTCCGATCCTTTCTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCTAAGC 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 ATTTCTCCGATCCTTTTTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCCAAGC 120
Query 120 CTGTTACGGCGGATGAAGTTAGCCAGAGTCAACCGGAATGGACTTTCGAGATGTTTCTCG 179
||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 121 TTGTTACGGCTGATGAAGTCAGCCACAGTCAACCCGAATGGACTTTCGAGATGTTTCTCG 180
Query 180 AAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGGTAACAACAACAACGCGATCG 239
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 181 AAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGG-----A-AACAACGCGATCG 234
Query 240 TCGGTGTTTCTTCGGCGCAATCTCTTCCTTCTGTTTCCGGACAGAATGATTTCGAGGATG 299
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 235 TCGGTGTTTCGTCGGCGCAATCTCTTCCTTCTGTTTCTGGACAGAACGATTTCGAGGATG 294
Query 300 ATAGTCGATTTCGTGATCGCGATTCGGGAAATTTGGATTGTGCTGCTCCCATGACGACGA 359
||||||||||||| |||||||||||||| |||| ||||||||||||| | | ||||||
Sbjct 295 ATAGTCGATTTCGCGATCGCGATTCGGGGAATTGGGATTGTGCTGCT-GC-T-CCGACGA 351
Query 360 AGACGGTGATTGTTGATTCCGATGA-T-T-ATCGTCGTGTTCTTAAGAACAAGCTTGAGA 416
|||||||||| ||||||||||||| | | ||| ||||||||||||| | ||||||||||
Sbjct 352 CGACGGTGATTATTGATTCCGATGATTATCATCATCGTGTTCTTAAGGATAAGCTTGAGA 411
Query 417 CTGAGTGCGCTACTGTTGTTTCTCTTCGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTA 476
||||||||| | || || || |||||||||||||||||||||||||||||||||
Sbjct 412 CTGAGTGCG---C---TG---CTGTTAGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTA 462
Query 477 GTTCTCCAGAAACTCAACTTCAACCAGTTCAATCCAGTCCTCTTA--C-TCAAGGTTCTT 533
||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 463 GTTCTCCAGAAACTCAATTTCAACCAGTTCAATCCAGTCCTCTTACTCATCAAGGTTCTT 522
Query 534 TGATGACCCCAGGAGAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGaaaaaaaCTG 593
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TAATGACCCCAGGAGAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGAAAAAAACTG 582
Query 594 GTGTATCAATGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGAGGACC 653
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 583 GTGTACCAACGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGATGACC 642
Query 654 TTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAA 702
Query 714 GGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAA 762
Query 774 GTGACCTCGAAACACAGGTTAATGATCTAAAAGGTGAGCATTC-ATCACTTCTTAAACAA 832
|||| |||||||||||||||||||| ||||| ||||| ||||| | |||| ||||| |||
Sbjct 763 GTGATCTCGAAACACAGGTTAATGAGCTAAAGGGTGAACATTCGA-CACTCCTTAAGCAA 821
Query 833 CTGAGCAACATGAATCACAAGTATGACGAGGCTGCTGTTGGCAATAGAATACT-AAAGGC 891
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |
Sbjct 822 CTGAGCAACATGAATCACAAGTATGATGAAGCTGCTGTTGGCAATAGAATACTTAAAG-C 880
Query 892 TGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCGTGAAGAGAGTAAC 951
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 881 TGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCATGAAGAGAGTAAC 940
Query 952 AGGAATGAATCCGATGCTTCTCGGAAGATCAAGTGGACATAACAACAACAACAGAATGCC 1011
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 941 AGGAATGAATCCGATGCTTCTCGGGGGATCAAGTGGACATAACAACAACA---GAATGCC 997
Query 1012 AATAACTGGTAACAACAGGATGGATTCTTCTAGCATTATTCCAGCTTATCAACCACACTC 1071
| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 998 ATTAACTGGTAACAAAAGGATGGATTCTTCTAGCACTATTCCAGCTTTTCAACTACACTC 1057
Query 1072 AAACCTAAACCATATGTCAAA-CCAAAACATCGGGATCCCAACCATTCTACCTCCAAGAC 1130
||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||
Sbjct 1058 AAACCTAAACCATATGTCAAATCCTAA-CATTGGGATCCCAACCATTCTACCTCCAAGAC 1116
Query 1131 TCGGAAACAATTTCG--C-TGCTCC-TCC--A---TCCCAAACCAGCTCTCCCTTGCAGA 1181
||||||||||||| | | | |||| ||| | ||||||||||||||||| |||||||
Sbjct 1117 TCGGAAACAATTTTGTTCCTCCTCCATCCCTAAACTCCCAAACCAGCTCTCCGTTGCAGA 1176
Query 1182 GAATTAGAAATGGGCAAAATCACCATGTTACTCCAAGCGCCAACCCGTATGGCTGGAATA 1241
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1177 GAATAAGAAATGGGCAAAATCACCATGTTGCTCCAGGCGCCAACCCGTATGGCTGGACTA 1236
Query 1242 CCGAACCTCAGAACGA-TTCAGCATGGCCGAAAAAATGCGTGGACTGATCAAACAAGAAG 1300
| |||||||||||||| || |||||||||||||||||||| |||||||| |||| ||||
Sbjct 1237 CTGAACCTCAGAACGAATT-AGCATGGCCGAAAAAATGCGGGGACTGATGAAACTTGAAG 1295
Query 1301 CGGGTTTCGCACTATATTAA 1320
|| ||||| | |||||||||
Sbjct 1296 CGAGTTTCACGCTATATTAA 1315
Score = 233 bits (126), Expect = 2e-60
Identities = 155/167 (93%), Gaps = 10/167 (6%)
Strand=Plus/Plus
Query 1349 TATTAAGTTACGAATCATGAGAAAACATCTTGTGAAAATACAGTCTCATGGCTtatatat 1408
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1310 TATTAAGTTACGAATCATGAGAAAACAT-TTGTGAAAATACAGTCTCATGGC-------T 1361
Query 1409 atatataAGCTCTGTCTTATAACATTACAAGATTCTTATTTGAGAATCGTCTTTCTATTT 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1362 -TATATAAGCTCTGTCTTATAACATTACAAGATTCTTATTTGAGAATCGTCTTTCTATCT 1420
Query 1469 ATAGCTAATAACAGAGTGTATATCTGTTTTTATCCAATTTTAAAAAA 1515
|||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1421 ATAGCTAATAACAGAGTG-ATATCTGTTTTTATCAAATTTTAAAAAA 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5