BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G02655.1

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943461 jgi|Araly1|943461|scaffold_604005.1                        542    1e-153
  Ahg472069 jgi|Araly1|472069|fgenesh2_kg.1__2023__AT1G18490.1         122    2e-27 


> Ahg943461 jgi|Araly1|943461|scaffold_604005.1
Length=403

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 368/403 (91%), Gaps = 9/403 (2%)
 Strand=Plus/Plus

Query  9    AACAAGCGAAGCCAAAAGCAATGAAGACTTCCATGAGCATCGTCGCCGTAGTCTTCTTTG  68
            |||||| |||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct  1    AACAAGAGAAGCCTAAAGCAATGAAGACTTCCATGGGCATCCTCGTCGTAGTCTTCTTTG  60

Query  69   TGACCTTCCTCGCTATCTCTGCTG---CTCCCTTAAACCCCCAAGAAGCTTGCATACGAA  125
             |||||||||||||||||||||||   |||||||||||||||| ||| ||||||||||||
Sbjct  61   CGACCTTCCTCGCTATCTCTGCTGCTCCTCCCTTAAACCCCCAGGAATCTTGCATACGAA  120

Query  126  GAAATATCAACAGGTCGCAACCACCAAGATCTTCTTCACTCGAAACGGCCAAGACGTCAA  185
            |||| ||||||||||| |||||||||||  | |||||||||| |||   |||||||||||
Sbjct  121  GAAACATCAACAGGTCACAACCACCAAG--C-TCTTCACTCG-AAC--ACAAGACGTCAA  174

Query  186  TGTTTGAATCTCTGAGGGACAATTTGTGCAAAGACATGGCTCGTGCCGTCATGTTCTATG  245
            | || || ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  175  TCTTCGACTCTCTTAGGGACAATTTGTGCAGAGACATGGCTCGTGCCGTCATGTTCTATG  234

Query  246  TGAGGATAACCGGAAAATTTCCATCTAACTATGTTAAGGCTATGTGTAATGTGTTTGGAA  305
            |||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||
Sbjct  235  TGAGGATAACCGGAAAGTTTCCAGCTCACTATGTTAAGGCGATGTGTAATGTGTTTGGAA  294

Query  306  ATGATGAGAAGAAAGTGAAGGAGTATGTTCTGGAGAAATGGTTGGGAGGTTCGAAGCTCC  365
            ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||
Sbjct  295  ATGATGAGAAGAAAGTGAAAGAGTATGTTATGGATAAATGGTTGGGAGGTTCGAAACTCC  354

Query  366  TGTCTAATGTATCTTGTGCTTTTCATTGATATGTTCCGTGATT  408
            |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  355  TGTCTAATGTATCTTGTGCTTTTCATTGATTTGTTCTGTGATT  397


> Ahg472069 jgi|Araly1|472069|fgenesh2_kg.1__2023__AT1G18490.1
Length=1441

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 77/82 (94%), Gaps = 2/82 (2%)
 Strand=Plus/Plus

Query  272  AACTATGTTAAGGCTATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAA-GGAGTA  330
            |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct  102  AACTATGTTAAGGCGATGTGTAATGTGTTTGGAAATGATGAGAAGAAAGTGAAAGG-GTA  160

Query  331  TGTTCTGGAGAAATGGTTGGGA  352
            |||| || ||||||||||||||
Sbjct  161  TGTTGTGAAGAAATGGTTGGGA  182



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21023729539


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5