BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02670.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352566 jgi|Araly1|352566|fgenesh1_pg.C_scaffold_6003159 1869 0.0
Ahg914631 jgi|Araly1|914631|Al_scaffold_0001_4885 361 8e-99
Ahg935944 jgi|Araly1|935944|scaffold_500135.1 289 4e-77
> Ahg352566 jgi|Araly1|352566|fgenesh1_pg.C_scaffold_6003159
Length=1218
Score = 1869 bits (1012), Expect = 0.0
Identities = 1150/1216 (95%), Gaps = 11/1216 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTCTTCTCATTCCTTGTCCTATAAGCTAAGCTCTTTGTCTA-CTGAAGCAAGTGC 59
|||||||| |||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 7 ATGTTTTCATCTCATTCCTTGTCCTATAAACTAAGCTCTTTGTCTAGC-GAAGCAAGTGC 65
Query 60 CTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTCACAATGTGAT 119
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 66 TTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTAACAATGTGAT 125
Query 120 TTCTAGTGTTTGTACACACACAGAGACTCACAAGCCTAAGAAAAAGAGAGGCCTTCCTGG 179
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 126 TTCTAGTGTTTGTACACACACAGAGACTCACAAGACTAAGAAAAGGAGAGGCCTTCCTGG 185
Query 180 AAATCCTGATCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 186 AAATCCTGATCCAGATGCAGAGGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 245
Query 240 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCA 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 246 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTCCAAAGAGATCAGAATCTACAGCTTCA 305
Query 300 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACACCAAAGAACAACAAAA 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 306 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACAGCAAAGAACAACAAAA 365
Query 360 GAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTGCTCATCACCATCCATCTAGAGCTCT 419
||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 366 GAAGAAAGTTTATGTGTGCCCAGAGACAAACTGTGTTCATCATCATCCATCTAGAGCTCT 425
Query 420 TGGGGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGGTGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 485
Query 480 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 545
Query 540 CTGTGGTACTAGAGATTATAGATGTGACTGCGGCACTCTTTTCTCGAGGAAAGACACTTT 599
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 546 CTGTGGTACAAGAGATTATAGATGTGACTGTGGCACTCTTTTCTCGAGGAAAGACAGTTT 605
Query 600 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGACTCCACTCAAC 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 606 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGAATCCACTCAAC 665
Query 660 TTCTTCCTCCAATCTCACAAACCCTAACCCTAATTTCCAAGGCCATCAT---TTTATGTT 716
|||||||||||||||||||||||||||||||| |||||| | ||||||| |||||| |
Sbjct 666 TTCTTCCTCCAATCTCACAAACCCTAACCCTATTTTCCACGACCATCATCACTTTATGGT 725
Query 717 CAATAAATCTTCCTCCTTGCTCTTCACGTCATCACCTCTTTTCATCGAACCATCACTTTC 776
||| |||||||| ||||| |||||||||||||||||||||| || ||||||||||| |||
Sbjct 726 CAACAAATCTTCTTCCTTACTCTTCACGTCATCACCTCTTTACAACGAACCATCACATTC 785
Query 777 CACCGCCGCTCTTTCAACGCCT-CCAACGGCAGCTCTTTCCGCGACGGCTCTTCTCCAAA 835
||| ||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||||
Sbjct 786 CACGGCCGCTCTTTCGACGTCTTCCA-CGGCAGCTCTTTCCGCGACGGCTCTCCTCCAAA 844
Query 836 AGGCCACCTCTCTCAGCTCCACTACTTTCGGCGGCGGAGGACAGACTCGATCCATTGGTC 895
|||||||| ||||||||||| | || |||||||||||||||||||||||||| |||||||
Sbjct 845 AGGCCACCGCTCTCAGCTCCTCCACATTCGGCGGCGGAGGACAGACTCGATCAATTGGTC 904
Query 896 ATCACCGACATTTGACGAACG-TCAACGAGTTTCTTGGTGTTGACCGAGTCATGATGACG 954
||||||||||||| |||| || |||||||| ||||||||||||| || |||||| |||||
Sbjct 905 ATCACCGACATTTAACGA-CGGTCAACGAGCTTCTTGGTGTTGATCGTGTCATGGTGACG 963
Query 955 TCAGCTTCTTCGTCTGAGTACGACCAGTTAGTTGTTGATGGGTTTACGTCCACGTGGCAG 1014
||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 964 TCATCTTCTTCGTCTGAGTACGACCAGCTAGTTGTTGATGGGTTAACATCCACGTGGCAG 1023
Query 1015 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGGG-GACACGTTAG 1073
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1024 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGAATG-CACGTTAG 1082
Query 1074 CGTCAGACCTGGGGATATGCTAGAGTACGCGGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1133
||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1083 CGTGAGACCCGGTGATATGCTAGAGTACGCAGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1142
Query 1134 CGATACCGAATCTCATGATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1193
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CGATACCGAATCTCATCATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1202
Query 1194 GGCCCATCGTATGTAA 1209
| |||||||||| |||
Sbjct 1203 GCCCCATCGTATCTAA 1218
> Ahg914631 jgi|Araly1|914631|Al_scaffold_0001_4885
Length=1371
Score = 361 bits (195), Expect = 8e-99
Identities = 390/482 (81%), Gaps = 22/482 (5%)
Strand=Plus/Plus
Query 178 GGAAATCCTGATCCAGATGCAGAAGTGATCGCATTATCA-CCAAAGACACTTCTTGCAAC 236
|||||||| || ||||| ||||||||||| || |||||| ||||| ||||| | || ||
Sbjct 208 GGAAATCCAGACCCAGAAGCAGAAGTGATGGCTTTATCACCCAAA-ACACTAATGGCGAC 266
Query 237 AAACAGATTCGTTTGTG-AGATATGCAACAAAGGGTTTCAAAGAGATCAGAATC-TACAG 294
|||||||||| | |||| || | ||||||||||| ||||||||||| || || | | ||
Sbjct 267 AAACAGATTCATATGTGAAG-TCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAA 324
Query 295 CTTCACAGGAGAGGCCACAATCTT-CCATGGAAGCTGAAACAGAAGAAC-ACCAAAGAAC 352
||||||| |||||| |||||| || ||||||||||| || || |||| | ||||||| |
Sbjct 325 CTTCACAAGAGAGGACACAAT-TTACCATGGAAGCTTAAGCA-AAGATCAACCAAAG-AT 381
Query 353 AACA-AAAGAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTGCT-CATCACCATCCATC 410
| | ||||||||| || || || |||||| ||| ||||| | ||||||||||||||
Sbjct 382 GTGATTAGGAAGAAAGTTTATGTCTGTCCAGAGCCAAGCTGTG-TCCATCACCATCCATC 440
Query 411 TAGAGCTCTTGGGGATC-TCACAGGGATCAAGAAACACTTT-TGCAGGAAACATGGAGAG 468
|||||||| || || | | || || |||||||| || ||| | ||| |||||||| |||
Sbjct 441 AAGAGCTCTCGGTGA-CTTAACCGGAATCAAGAAGCA-TTTCTTCAGAAAACATGGCGAG 498
Query 469 AAGAAATGGAAATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCT 528
|||||||||||||||||||||||||| ||| ||||| || ||||| |||||||| |||
Sbjct 499 AAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCT 558
Query 529 CATACCAAGATCT-GTGGTACTAGAGATTATAGATGTGACTGCGGCACTCT-TTTCTCGA 586
||| | |||| || |||| |||| ||| || ||||| ||||| || ||||| ||| || |
Sbjct 559 CATGCTAAGA-CTTGTGGCACTAAAGAATACAGATGCGACTGTGGAACTCTCTTT-TCTA 616
Query 587 GGAAAGACACTTTCATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAA 646
||| || | ||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct 617 GGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAA 676
Query 647 GA 648
||
Sbjct 677 GA 678
> Ahg935944 jgi|Araly1|935944|scaffold_500135.1
Length=1840
Score = 289 bits (156), Expect = 4e-77
Identities = 377/478 (79%), Gaps = 38/478 (8%)
Strand=Plus/Plus
Query 189 TCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAACAGATTCGT 248
||| |||||||||||||| || ||||| ||||||||||| | || |||||||||||| |
Sbjct 207 TCC-GATGCAGAAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCAT 265
Query 249 TTGTG-AGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCACAGGAGAG 307
||||| || ||||||||||||||||||||||||| || |||||||| |||||| | ||||
Sbjct 266 TTGTGAAG-TATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTTCACCGAAGAG 324
Query 308 GCCACAATCTTCCATGGAAGCTGAAACAGAAGAAC-ACCAAAGAACAACAAAAGAAGAAA 366
| ||||||||||||||||||||||||||||| | | ||||||||| || |||| ||
Sbjct 325 GACACAATCTTCCATGGAAGCTGAAACAGAA-ATCGACCAAAGAAGTG-AAGAGAA-AA- 380
Query 367 GTCTA-CGTGTGCCCAGAGACAAACTGTGC-TCATCACCAT--CCA-TCTA-GAGCTCTT 420
|| || | | || || ||| | | |||| || |||||| || || | | |||||
Sbjct 381 GTGTATCTT-TGTCCGGAGCCCT-C-GTGCGTC--CACCATGACCCCTC-ACGTGCTCTC 434
Query 421 GGGGATCTCACAGGGATCAAGAAACACTT-TTGCAGGAAACATGGAGAGAAGAAATGGAA 479
|| || ||||| || ||||||||||| || || | | ||||| || || ||||| |||||
Sbjct 435 GGAGACCTCACCGGAATCAAGAAACA-TTATTACCGTAAACACGGTGAAAAGAAGTGGAA 493
Query 480 ATGTGA-AAAGTGTTCAAAGT-TCTATGCTGTTCAATCTGATTGGAAAGCTCA-TACCAA 536
||| || ||| || || ||| | || ||||||||||| |||||||||||||| | ||||
Sbjct 494 ATGCGATAAA-TGCTCTAAGCGT-TACGCTGTTCAATCAGATTGGAAAGCTCACT-CCAA 550
Query 537 GATCT-GTGGTACTAGAGATTATAGATGTGACTGCGG--CACTCTTTTCTCGAG-GAAAG 592
|| || ||||||| | ||| ||| | |||||||| || ||||||| ||||| | || |
Sbjct 551 GA-CTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTCG-GCGA--G 606
Query 593 ACACTTTCATAACGCATAGAGCGTTT-TGTGATGCATTAGCAGAAGAAAGTGCAAGAC 649
||| |||||| || |||||||| ||| ||||| || || || |||| ||||| ||||
Sbjct 607 ACAGTTTCATCACACATAGAGC-TTTCTGTGACGCGTTGGCTCAAGAGAGTGCGAGAC 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5