BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02670.1 Length=1209 Score E Sequences producing significant alignments: (Bits) Value Ahg352566 jgi|Araly1|352566|fgenesh1_pg.C_scaffold_6003159 1869 0.0 Ahg914631 jgi|Araly1|914631|Al_scaffold_0001_4885 361 8e-99 Ahg935944 jgi|Araly1|935944|scaffold_500135.1 289 4e-77 > Ahg352566 jgi|Araly1|352566|fgenesh1_pg.C_scaffold_6003159 Length=1218 Score = 1869 bits (1012), Expect = 0.0 Identities = 1150/1216 (95%), Gaps = 11/1216 (1%) Strand=Plus/Plus Query 1 ATGTTTTCTTCTCATTCCTTGTCCTATAAGCTAAGCTCTTTGTCTA-CTGAAGCAAGTGC 59 |||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||| Sbjct 7 ATGTTTTCATCTCATTCCTTGTCCTATAAACTAAGCTCTTTGTCTAGC-GAAGCAAGTGC 65 Query 60 CTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTCACAATGTGAT 119 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 66 TTCTTCTGGTAACAACACACTCAGTACCATCCAAGAATTCAGTGGCTTTAACAATGTGAT 125 Query 120 TTCTAGTGTTTGTACACACACAGAGACTCACAAGCCTAAGAAAAAGAGAGGCCTTCCTGG 179 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 126 TTCTAGTGTTTGTACACACACAGAGACTCACAAGACTAAGAAAAGGAGAGGCCTTCCTGG 185 Query 180 AAATCCTGATCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 239 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 186 AAATCCTGATCCAGATGCAGAGGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAA 245 Query 240 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCA 299 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 246 CAGATTCGTTTGTGAGATATGCAACAAAGGGTTCCAAAGAGATCAGAATCTACAGCTTCA 305 Query 300 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACACCAAAGAACAACAAAA 359 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 306 CAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAACAGCAAAGAACAACAAAA 365 Query 360 GAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTGCTCATCACCATCCATCTAGAGCTCT 419 ||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 366 GAAGAAAGTTTATGTGTGCCCAGAGACAAACTGTGTTCATCATCATCCATCTAGAGCTCT 425 Query 420 TGGGGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 479 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 TGGTGATCTCACAGGGATCAAGAAACACTTTTGCAGGAAACATGGAGAGAAGAAATGGAA 485 Query 480 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 ATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATACCAAGAT 545 Query 540 CTGTGGTACTAGAGATTATAGATGTGACTGCGGCACTCTTTTCTCGAGGAAAGACACTTT 599 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 546 CTGTGGTACAAGAGATTATAGATGTGACTGTGGCACTCTTTTCTCGAGGAAAGACAGTTT 605 Query 600 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGACTCCACTCAAC 659 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 606 CATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGAATCCACTCAAC 665 Query 660 TTCTTCCTCCAATCTCACAAACCCTAACCCTAATTTCCAAGGCCATCAT---TTTATGTT 716 |||||||||||||||||||||||||||||||| |||||| | ||||||| |||||| | Sbjct 666 TTCTTCCTCCAATCTCACAAACCCTAACCCTATTTTCCACGACCATCATCACTTTATGGT 725 Query 717 CAATAAATCTTCCTCCTTGCTCTTCACGTCATCACCTCTTTTCATCGAACCATCACTTTC 776 ||| |||||||| ||||| |||||||||||||||||||||| || ||||||||||| ||| Sbjct 726 CAACAAATCTTCTTCCTTACTCTTCACGTCATCACCTCTTTACAACGAACCATCACATTC 785 Query 777 CACCGCCGCTCTTTCAACGCCT-CCAACGGCAGCTCTTTCCGCGACGGCTCTTCTCCAAA 835 ||| ||||||||||| ||| || ||| ||||||||||||||||||||||||| ||||||| Sbjct 786 CACGGCCGCTCTTTCGACGTCTTCCA-CGGCAGCTCTTTCCGCGACGGCTCTCCTCCAAA 844 Query 836 AGGCCACCTCTCTCAGCTCCACTACTTTCGGCGGCGGAGGACAGACTCGATCCATTGGTC 895 |||||||| ||||||||||| | || |||||||||||||||||||||||||| ||||||| Sbjct 845 AGGCCACCGCTCTCAGCTCCTCCACATTCGGCGGCGGAGGACAGACTCGATCAATTGGTC 904 Query 896 ATCACCGACATTTGACGAACG-TCAACGAGTTTCTTGGTGTTGACCGAGTCATGATGACG 954 ||||||||||||| |||| || |||||||| ||||||||||||| || |||||| ||||| Sbjct 905 ATCACCGACATTTAACGA-CGGTCAACGAGCTTCTTGGTGTTGATCGTGTCATGGTGACG 963 Query 955 TCAGCTTCTTCGTCTGAGTACGACCAGTTAGTTGTTGATGGGTTTACGTCCACGTGGCAG 1014 ||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||||| Sbjct 964 TCATCTTCTTCGTCTGAGTACGACCAGCTAGTTGTTGATGGGTTAACATCCACGTGGCAG 1023 Query 1015 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGGG-GACACGTTAG 1073 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1024 AAAGCTGACCGTTTGACCAGAGACTTTCTTGGACTCACGGGTCATGGAATG-CACGTTAG 1082 Query 1074 CGTCAGACCTGGGGATATGCTAGAGTACGCGGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1133 ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1083 CGTGAGACCCGGTGATATGCTAGAGTACGCAGGTGGAGTGGCGTTTCCTATGTCGGCGTA 1142 Query 1134 CGATACCGAATCTCATGATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1193 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 CGATACCGAATCTCATCATCACTCGTTTCAGAAGGCTTACGATCATCTGGGATTCTCAGG 1202 Query 1194 GGCCCATCGTATGTAA 1209 | |||||||||| ||| Sbjct 1203 GCCCCATCGTATCTAA 1218 > Ahg914631 jgi|Araly1|914631|Al_scaffold_0001_4885 Length=1371 Score = 361 bits (195), Expect = 8e-99 Identities = 390/482 (81%), Gaps = 22/482 (5%) Strand=Plus/Plus Query 178 GGAAATCCTGATCCAGATGCAGAAGTGATCGCATTATCA-CCAAAGACACTTCTTGCAAC 236 |||||||| || ||||| ||||||||||| || |||||| ||||| ||||| | || || Sbjct 208 GGAAATCCAGACCCAGAAGCAGAAGTGATGGCTTTATCACCCAAA-ACACTAATGGCGAC 266 Query 237 AAACAGATTCGTTTGTG-AGATATGCAACAAAGGGTTTCAAAGAGATCAGAATC-TACAG 294 |||||||||| | |||| || | ||||||||||| ||||||||||| || || | | || Sbjct 267 AAACAGATTCATATGTGAAG-TCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAA 324 Query 295 CTTCACAGGAGAGGCCACAATCTT-CCATGGAAGCTGAAACAGAAGAAC-ACCAAAGAAC 352 ||||||| |||||| |||||| || ||||||||||| || || |||| | ||||||| | Sbjct 325 CTTCACAAGAGAGGACACAAT-TTACCATGGAAGCTTAAGCA-AAGATCAACCAAAG-AT 381 Query 353 AACA-AAAGAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTGCT-CATCACCATCCATC 410 | | ||||||||| || || || |||||| ||| ||||| | |||||||||||||| Sbjct 382 GTGATTAGGAAGAAAGTTTATGTCTGTCCAGAGCCAAGCTGTG-TCCATCACCATCCATC 440 Query 411 TAGAGCTCTTGGGGATC-TCACAGGGATCAAGAAACACTTT-TGCAGGAAACATGGAGAG 468 |||||||| || || | | || || |||||||| || ||| | ||| |||||||| ||| Sbjct 441 AAGAGCTCTCGGTGA-CTTAACCGGAATCAAGAAGCA-TTTCTTCAGAAAACATGGCGAG 498 Query 469 AAGAAATGGAAATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCT 528 |||||||||||||||||||||||||| ||| ||||| || ||||| |||||||| ||| Sbjct 499 AAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCT 558 Query 529 CATACCAAGATCT-GTGGTACTAGAGATTATAGATGTGACTGCGGCACTCT-TTTCTCGA 586 ||| | |||| || |||| |||| ||| || ||||| ||||| || ||||| ||| || | Sbjct 559 CATGCTAAGA-CTTGTGGCACTAAAGAATACAGATGCGACTGTGGAACTCTCTTT-TCTA 616 Query 587 GGAAAGACACTTTCATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAA 646 ||| || | ||||||||| |||||||| ||||| ||||||||||||||||| ||||||| Sbjct 617 GGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAA 676 Query 647 GA 648 || Sbjct 677 GA 678 > Ahg935944 jgi|Araly1|935944|scaffold_500135.1 Length=1840 Score = 289 bits (156), Expect = 4e-77 Identities = 377/478 (79%), Gaps = 38/478 (8%) Strand=Plus/Plus Query 189 TCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAACAGATTCGT 248 ||| |||||||||||||| || ||||| ||||||||||| | || |||||||||||| | Sbjct 207 TCC-GATGCAGAAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCAT 265 Query 249 TTGTG-AGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCACAGGAGAG 307 ||||| || ||||||||||||||||||||||||| || |||||||| |||||| | |||| Sbjct 266 TTGTGAAG-TATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTTCACCGAAGAG 324 Query 308 GCCACAATCTTCCATGGAAGCTGAAACAGAAGAAC-ACCAAAGAACAACAAAAGAAGAAA 366 | ||||||||||||||||||||||||||||| | | ||||||||| || |||| || Sbjct 325 GACACAATCTTCCATGGAAGCTGAAACAGAA-ATCGACCAAAGAAGTG-AAGAGAA-AA- 380 Query 367 GTCTA-CGTGTGCCCAGAGACAAACTGTGC-TCATCACCAT--CCA-TCTA-GAGCTCTT 420 || || | | || || ||| | | |||| || |||||| || || | | ||||| Sbjct 381 GTGTATCTT-TGTCCGGAGCCCT-C-GTGCGTC--CACCATGACCCCTC-ACGTGCTCTC 434 Query 421 GGGGATCTCACAGGGATCAAGAAACACTT-TTGCAGGAAACATGGAGAGAAGAAATGGAA 479 || || ||||| || ||||||||||| || || | | ||||| || || ||||| ||||| Sbjct 435 GGAGACCTCACCGGAATCAAGAAACA-TTATTACCGTAAACACGGTGAAAAGAAGTGGAA 493 Query 480 ATGTGA-AAAGTGTTCAAAGT-TCTATGCTGTTCAATCTGATTGGAAAGCTCA-TACCAA 536 ||| || ||| || || ||| | || ||||||||||| |||||||||||||| | |||| Sbjct 494 ATGCGATAAA-TGCTCTAAGCGT-TACGCTGTTCAATCAGATTGGAAAGCTCACT-CCAA 550 Query 537 GATCT-GTGGTACTAGAGATTATAGATGTGACTGCGG--CACTCTTTTCTCGAG-GAAAG 592 || || ||||||| | ||| ||| | |||||||| || ||||||| ||||| | || | Sbjct 551 GA-CTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTCG-GCGA--G 606 Query 593 ACACTTTCATAACGCATAGAGCGTTT-TGTGATGCATTAGCAGAAGAAAGTGCAAGAC 649 ||| |||||| || |||||||| ||| ||||| || || || |||| ||||| |||| Sbjct 607 ACAGTTTCATCACACATAGAGC-TTTCTGTGACGCGTTGGCTCAAGAGAGTGCGAGAC 663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45137533728 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5