BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02680.1
Length=3422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490290 jgi|Araly1|490290|fgenesh2_kg.6__3424__AT4G02680.1 4726 0.0
> Ahg490290 jgi|Araly1|490290|fgenesh2_kg.6__3424__AT4G02680.1
Length=3224
Score = 4726 bits (2559), Expect = 0.0
Identities = 2826/2957 (96%), Gaps = 10/2957 (0%)
Strand=Plus/Plus
Query 404 CATAGAGAAATGCTTTTAGCTTTAGGTGTTGTAAGATCTCATAATACCAAAGTTCAGA-- 461
||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 251 CATAGAGAAGTGC-TTTAGCTTTAGGTGTTGGAAGATCTCATAATACCAAAGTTCAGATT 309
Query 462 -tttt-tttGTATAGGATTCCATTAAG-TAGCCCATCTCCACTTAGTTTCTGGTCTGGGT 518
|||| |||||||| ||||||||| || || | ||||| |||||||||||||| ||||||
Sbjct 310 TTTTTGTTTGTATAAGATTCCATT-AGTTAACACATCTTCACTTAGTTTCTGGGCTGGGT 368
Query 519 AGTGTGTAACCGACAAGAAAATAGTGTTTTGACTATCCTCTGGCTATCCTGGAGATCTGG 578
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 369 AGTGTGAAATCGACAAGAAAATAGTGTTTTGATTATCCTCTGGCTATCCTGGAGATCTGG 428
Query 579 GATTTGTTTCATCTGTTATGTCAGATGAGGACTTTTTACCCTTCTGATTCTTGTAAAGAA 638
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 429 GATTTGTTTCATCTGTTATGTCAGATGAGGACTTTTTACCCATCTGATTCTTGTAAAGAA 488
Query 639 TCACAACTCGATTCCTTGAATCCACAGTCATGGCTTCAAGTTGAGAGAGGGAAGCTATCT 698
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TCACAGCTCAATTCCTTGAATCCACAGTCATGGCTTCAAGTTGAGAGAGGGAAGCTATCT 548
Query 699 TCCTCTGCTTCTTCATCTGCTCCACTGTGTAGAGAATCATTTATCAAAGTTCC-CGAGCC 757
|||||||| ||||||||||||||||| || |||||||| |||||||||||||| | ||||
Sbjct 549 TCCTCTGCCTCTTCATCTGCTCCACTATGCAGAGAATCGTTTATCAAAGTTCCTC-AGCC 607
Query 758 TCAGATACTGCCGCATTATAAGCCTCTCGACTATGTAGAAGTTCTAGCTCAGATTCATGA 817
|||||||||||||||||||| ||| || |||| ||||||||||||||||||||||| ||
Sbjct 608 GCAGATACTGCCGCATTATAAACCTGTCAACTACGTAGAAGTTCTAGCTCAGATTCACGA 667
Query 818 AGAACTCGACACTTGCCCTTTGCAGGAGAGATCGATTCTGTATTTGTTGCAGTATCAAGT 877
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 668 AGAACTCGAGACTTGTCCTTTGCAGGAGAGATCGATTCTGTATTTATTGCAGTATCAAGT 727
Query 878 GTTTAGAGGTCTTGGAGAGACCAAACTTAGACGGAGAAGCCTTCAATCAGCTTGGCAAGA 937
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 728 GTTTAGAGGTCTTGGAGAGACCAAACTTAGACGGAGAAGCCTTCAGTCAGCTTGGCAAGA 787
Query 938 GGCTACTACTGTCCATGAGAAAGTTGTGTTTGGATCTTGGTTGAGGTATGAGAAACAAGG 997
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 788 GGCTACTACTGTACATGAGAAAGTTGTGTTTGGGTCTTGGTTGAGGTATGAGAAACAAGG 847
Query 998 AGAAGAAGTTATCACAGATTTGCTTTCCTCTTGTGGTAAATATTCTGAAGAATTTGTGCC 1057
||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 848 AGAAGAAGTTATCACCGATTTGCTTTCTTCTTGTGGTAAATTTTCTGAAGAATTTGTGCC 907
Query 1058 ACTAGATATTGCATCCTATTTCCCAGCTACTACTGCTTCTTCCCCTGAGGCAGCATCTGT 1117
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 908 GCTGGATATTGCATCCTATTTCCCAGCTATTACTGCTTCTTCCCCTGAGGCAGCATCTGT 967
Query 1118 GAAGACGAACCGCAGTGTATCTAAAAATGTTGTGTTTAAGATAGGAGAAGAGAAGATAGC 1177
|||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 968 GAAGACCAAGCGCAGTGTATCGAAAAATGTTGTGTTTAAGATAGGAGAAGATAAGATAGC 1027
Query 1178 TTGCCAAAGGCGGAAAATTGCGAGTCTTTCAGCTCCATTTCATGCTATGCTTTATGGTAA 1237
|||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 1028 TTGCCAGAGGCAAAAAATTGCCAGTCTTTCAGCTCCATTTCATGCAATGCTTTATGGGAA 1087
Query 1238 TTTCACGGAATCGCTTCTTGATGAGATAGATATGTCAGAAAACCATGTATCCTCATCAGC 1297
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1088 TTTCACGGAATCACTTCTTGATGAGATAGATATGTCAGAAAATCATGTATCCTCGTCAGC 1147
Query 1298 TATGCGGGTTGTTAGAGATTTCAGCGTTGTTGGTGTACTAATCGGAGTTTCCAAGAACCT 1357
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1148 TATGCGGGTTGTTAGAGATTTCAGCGTTGTGGGTGTATTAATCGGAGTTTCCAAGAACCT 1207
Query 1358 TCTTTTGGAAGTTTTAGTTTTCGCAAACAAGTTTTGCTGCGAGCGACTTAAAGATGCATG 1417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1208 TCTTTTGGAAGTTTTAGTTTTCGCAAACAAGTTTTGCTGCGAGCGACTCAAAGATGCATG 1267
Query 1418 CGATAGAGAATTGGCATCTTTGATTTCTTCTATGGAATGTGCCATTGAGCTTATGGACTT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CGATAGAGAATTGGCATCTTTGATTTCTTCTATGGAATGTGCCATTGAGCTTATGGACTT 1327
Query 1478 TGCACTTGAAGAGAATTCCCCCATCCTAGCTTCATCGTGTCTGCAAGTTTTTCTTTATGA 1537
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1328 TGCACTCGAAGAAAATTCCCCCATCCTAGCTACATCGTGTCTGCAAGTTTTTCTTTATGA 1387
Query 1538 GATGCCTGATAGTTTGAATGATGAGCGTGTTGTTGAGGTTTTGACTCGAGTTAATAGATC 1597
|||||| |||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1388 GATGCCCGATAGTTTGACTGATGAGCGTGTTGTCGAGGTTCTGACTCGAGTTAATAGATC 1447
Query 1598 TCAAGTCTCAACCATGGCAGGAAAAGCTCCATTCTCCTTATATTCTTGTTTAAGTGAAGT 1657
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1448 TCAAGTCTCAACCATGGCAGGAAAAGCTTCATTCTCCTTATACTCTTGTTTAAGTGAAGT 1507
Query 1658 CTCGATGTGTATAGATCCTCGGTCTGACAGAACACTCGGTTTCTTGGAGAAATTAGTTGA 1717
||||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 1508 CTCGATGCGTATAGATCCTCGGTCTGACAGAACATTGGGTTTCTTGGAGAAACTAGTTGA 1567
Query 1718 CTTTGCAGAAAATGACCGGCAACAAGTATTGGGGTTCCATCGGTTAGGTTGTATGAGGCT 1777
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1568 CTTTGCAGAAAATGACCGGCAACAAGTATTGGGGTTCCATCGGTTAGGATGTATGAGGCT 1627
Query 1778 ATTGAGGAAAGAATACCGGGAGGCTGAAGAAGCTTTTGAAACAGCTTTTAACTTAGGCCA 1837
|||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||
Sbjct 1628 ATTGAGGAAAGAATACCGGGAGGCCGAAGAAGCTTTTGAATCAGCTTTCAATTTAGGCCA 1687
Query 1838 TGTGTATTCCGCTACTGGTTTAGCAAGACTAGGATACATCCAAGGGCATCGGCTTTGGGC 1897
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 TGTGTATTCTGCTACTGGTTTAGCAAGACTAGGATACATCCAAGGGCATCGGCTTTGGGC 1747
Query 1898 TTATGAGAAGCTAAGCTCGGTAATCTCCTCTGTTTCGCCGCCTCTCGGGTGGATGTATCA 1957
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1748 TTACGAGAAGCTAAGCTCGGTAATCTCCTCTGTTTCGCCACCTCTCGGGTGGATGTATCA 1807
Query 1958 GGAAAGGTCTTTCTATTGTGAGGGTGACAAGAAATTGGAAGATCTCGAGAAGGCAACCGA 2017
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1808 GGAAAGGTCTTTCTATTGTGAGGGTGATAAGAAATTGGAAGATCTCGAGAAGGCAACCGA 1867
Query 2018 ATTGGATCCGACTTTGACATATCCTTACATGTATAGAGCTGTCACACGAATGTCGAAACA 2077
|||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1868 ATTGGACCCGACTTTGACATATCCTTACATGTATAGAGCTGTCACTCTAATGTCGAAACA 1927
Query 2078 AAATGCTAAGGCTGCTCTTGAAGAAATCAATCGGATCTTGGGGTTTAAACTTGCTTTAGA 2137
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 AAATGCTAAGGCTGCGCTTGAAGAAATCAATCGGATCTTGGGGTTTAAACTTGCTTTAGA 1987
Query 2138 ATGCTTAGAAATTCGGTTTTGTCTTTATCTTGGTATGGATGACTATGAAGCGGCTCTTCG 2197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 ATGCTTAGAAATTCGGTTTTGTCTTTATCTTGGTATGGATGACTATGAAGCGGCTCTTCG 2047
Query 2198 TGATATTCAGGCTGCTCTTACGCTGTGTCCTGATTATAGAATGTTCGATGGGAAAGTAGC 2257
|||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 2048 TGATATTCAGGCGGCTCTTACTCTGTGTCCGGATTATCGAATGTTCGATGGGAAAGTAGC 2107
Query 2258 TGGGAGGCAGCTCCAGACGCTTGTGTATGAGCATGTCGAGAATTGGACAACCGCAGATTG 2317
|||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 2108 TGGGAGGCAGCTCCGGACACTTGTGTATGAGCATGTCGAGAATTGGACGACTGCAGATTG 2167
Query 2318 TTGGATGCAGCTATATGAGAAATGGTCTAATGTTGATGATATAGGTTCTCTTTCTGTAAT 2377
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2168 TTGGATGCAGCTATATGAGAAATGGTCGAATGTTGATGATATAGGTTCTCTTTCAGTAAT 2227
Query 2378 CTATCAGATGCTCGAATCCGATGCTTGCAAAGGTGTTCTCTACTTCAGGCAATCTTTGCT 2437
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2228 CTATCAGATGCTCGAATCCGATGCTTGCAAAGGTGTTCTTTACTTCAGGCAATCTTTGCT 2287
Query 2438 TCTCCTAAGGTTGAATTGTCCAGAAGCAGCGATGCGCAGTTTACAGTTAGCCCGCGAGCA 2497
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2288 TCTGCTAAGGTTGAATTGTCCCGAAGCAGCGATGCGTAGTTTACAGTTAGCCCGCGAGCA 2347
Query 2498 TGCCTCAAGTGACCACGAGCGTCTAGTTTACGAAGGATGGATCTTGTATGATACAGGTCA 2557
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348 TGCCTCGAGTGACCACGAGCGTCTAGTTTACGAAGGATGGATCTTGTATGATACAGGTCA 2407
Query 2558 CTGCGAAGAAGGGCTTCAAAAGGCTAAGGAATCCATTGGAATAAAGAGATCATTTGAAGC 2617
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 2408 CTGCGAAGAAGGGCTTCAAAAGGCTAAGGAATCCATTAGAATAAAGAGATCATTCGAAGC 2467
Query 2618 TTATTTCCTCCAAGCTTATGCCTTAGCAGAATCTAGCCTTGATCCATCGAGTTCTTCTAC 2677
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2468 TTATTTCCTCCAAGCTTATGCCTTAGCGGAATCTAGCCTTGATCCATCGAGTTCTTCGAC 2527
Query 2678 TGTTGTTTCACTTCTTGAAGATGCTCTTAAATGCCCCTCTGATAGGTTGCGCAAAGGTCA 2737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2528 TGTTGTTTCACTTCTTGAAGATGCTCTTAAATGCCCCTCTGATAGGTTGCGCAAAGGTCA 2587
Query 2738 GGCTCTGAACAATCTCGGGAGTGTCTATGTCGATTGCGAGAAGCTAGATTTAGCTGCGGA 2797
||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 2588 GGCTCTGAACAATCTTGGGAGCGTCTATGTTGATTGCGAGAAGCTAGACTTAGCTGCGGA 2647
Query 2798 TTGCTATATAAACGCTCTCAAGGTAAGACACACGCGTGCACACCAAGGTCTAGCTCGTGT 2857
|||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||
Sbjct 2648 TTGCTATATAAACGCTCTTAAGGTAAGGCACACACGTGCACACCAAGGCCTAGCTCGTGT 2707
Query 2858 CCATTTCCTTAGAAACGACAAAGCTGCAGCCTACGAAGAAATGACCAGACTAATCGAAAA 2917
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2708 CCATTTCCTTAGAAATGACAAAGCTGCAGCCTACGAAGAAATGACCAGACTAATCGAAAA 2767
Query 2918 GGCTCAAAACAATGCATCCGCCTACGAGAAAAGATCTGAGTATTGTGATCGTGAACTCGC 2977
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2768 GGCTCAAAACAATGCATCCGCCTATGAGAAAAGATCTGAGTATTGTGATCGTGAACTCGC 2827
Query 2978 CAAATCTGATCTTGAAATGGTCACCCGGTTAGACCCTCTCCGGGTTTATCCTTACCGATA 3037
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2828 CAAATCTGATCTTGAAATGGTCACCCGGTTAGACCCTCTCCGGGTTTATCCTTATCGATA 2887
Query 3038 TCGCGCCGCAGTGTTGATGGATAGTCGGAAAGAGAGAGAGGCTATCACAGAGTTATCCCG 3097
|||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 2888 TCGCGCTGCAGTGTTGATGGATAGTCGGAAGGAGAGAGAGGCTATTGCGGAGTTATCCCG 2947
Query 3098 AGCTATCGCCTTTAAAGCAGATCTTCATCTTCTTCACTTACGAGCGGCTTTCCACGAGCA 3157
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 2948 AGCTATCGCATTTAAAGCGGATCTTCATCTTCTTCACTTAAGAGCGGCTTTCCACGAGCA 3007
Query 3158 TATCGGTGATGTCACGAGTGCGTTGCGGGACTGTCGTGCAGCGCTCTCGGTCGACCCCAA 3217
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3008 CATTGGTGATGTCACGAGTGCATTGCGGGACTGTCGTGCAGCGCTCTCGGTCGACCCCAA 3067
Query 3218 CCATCAGGAGATGCTCGAACTCCATAGCCGTGTTAATAGCCATGAACCTTGAACCGCAAC 3277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3068 CCATCAGGAGATGCTCGAACTCCATAGCCGTGTTAATAGCCATGAACCTTGAACCGCAAC 3127
Query 3278 CACACACAAAAGAGCTTCGATATGAAAGTAAAGTGTGAAAAATTGTAATACTAAAAGAAT 3337
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 3128 CACACACAACAGAGCTTCGAGATGAAAGTAAAGTGTGAAAA-TTGTAATACTAAAAGAAT 3186
Query 3338 CATTGTTGGAAACTTGT 3354
||| |||||||||||||
Sbjct 3187 CATAGTTGGAAACTTGT 3203
Score = 254 bits (137), Expect = 4e-66
Identities = 193/217 (89%), Gaps = 15/217 (7%)
Strand=Plus/Plus
Query 24 CTCTCTCTCTCACTTCGATTCACTTTTGCTCAAACTTGACAACTTGTCCGAATCTGTCCA 83
|||||||||||||||||||||||||||||| | | ||||||||||||||| ||||
Sbjct 1 CTCTCTCTCTCACTTCGATTCACTTTTGCT----C---A-AACTTGTCCGAATCTCTCCA 52
Query 84 TAGCACACCTCTCTCTCTGTTTTAGGGTTTTCTCTTCACTGGTGCTT-TCTTCC-TTGTC 141
||||||| | ||| |||||||||||||||||||||| | | || || |||||| |||||
Sbjct 53 TAGCACA-C-CTC-CTCTGTTTTAGGGTTTTCTCTTGAATCGT--TTCTCTTCCTTTGTC 107
Query 142 TCGCTGGTTCAAAGATTCTTACTTTTTGATGTCTAAGACATCTTAGATTTGTTAGACTCT 201
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 108 TCGCTGGTTCAAAGATTCTTACTTTTTGATGTCTTAGACATCCTAGATTTGTTAGATTCT 167
Query 202 CTTTAATTTTTCTGGGTTTAGCCACTAGATTATGTTA 238
|||| |||||||||||||||||||||||||| |||||
Sbjct 168 CTTTGATTTTTCTGGGTTTAGCCACTAGATTGTGTTA 204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129205460335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5