BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02690.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490289 jgi|Araly1|490289|fgenesh2_kg.6__3423__AT4G02690.1 1393 0.0
> Ahg490289 jgi|Araly1|490289|fgenesh2_kg.6__3423__AT4G02690.1
Length=1023
Score = 1393 bits (754), Expect = 0.0
Identities = 933/1014 (92%), Gaps = 34/1014 (3%)
Strand=Plus/Plus
Query 269 AATAATGTATCAGTGGAACTTACCGTACCGGAAAGATGACGTGGAAACAGGCGTTAGCTC 328
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 39 AATAATGTATCAGTGGAACTTACCGTATCGGAAAGATGACGTGGAAACAGGTTTTAGCTC 98
Query 329 AAGAAGGCCTTTACTATACCCAGCGATGCATGAAAATCCCGAGCTCCGGTGGGGATTTAT 388
||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 99 AAGAAGGCC-TT--TATACCCAACGATGCTTGAAAATCCCGAGCTCCGGTGGGGATTTAT 155
Query 389 ACGCAAGGTCTACTCTATAATCGCCTTTCAGCTTCTAGCCACCGTCGCTGTCGCTGCCAC 448
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 156 ACGCAAGGTTTACTCTATAATCGCCTTTCAGCTTCTAGCCACCGTCGCCGTCGCCGCCAC 215
Query 449 GGTGGTCACCGTCCGTCCAATCGCTCTGTTCTTCGCCACCACCGGACTTGGATTAGCTCT 508
||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 216 GGTGGTCACGGTCCATCCAATCGCTCTGTTTTTCGCCACCACCGGACTTGGATTAGCTCT 275
Query 509 TTACATAGTCATCATCATCAC-ACCTCTCATAGTGTTGTGTCCGTTGTACTATTACCATC 567
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 276 TTACATAGTCATCATCATCACGCCCT-TGTTAGTGTTGTGTCCGTTGTACTATTACCATC 334
Query 568 AGAAACATCCGGTGAATTACTTGCTCTTGGGGATTTTCACTTTGGCTCTGGCTTTTGTTG 627
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 335 AGAAGCATCCGGTGAATTACTTGCTCTTGGGAATTTTCACTTTGGCTCTGGCTTTTGTTG 394
Query 628 TTGGATTAACATGTGCCTTCACCAATGGGAAAGTGATTCTCGAGTCAGTGATCTTGACAT 687
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 395 TTGGATTAACATGTGCCTTCACCAATGGGAAAGTGATTCTCGAGTCAGCGATCTTGACAT 454
Query 688 CGGTAGTGGTGCTTTCGCTCACATTATATACTTTTTGGGCTGCTAGGAAAGGATATGACT 747
|||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 455 CGGTTGTGGTGCTTTCCCTCACATTATACACCTTTTGGGCTGCTAGGAAAGGATATGACT 514
Query 748 TTAATTTCCTTGGACCCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TTAATTTCCTTGGACCCTTCTTGTTTGGCGCTCTCACCGTGCTTATTTTCTTCGCCTTAA 574
Query 808 TACAAATTTTGTTCCCATTAGGGAGGGTATCAGTGATGATCTATGGTTGTTTGGTATCGA 867
|||||||| |||||||||||||| || |||| ||||||||||| ||||||||||||||||
Sbjct 575 TACAAATTCTGTTCCCATTAGGGCGGATATCGGTGATGATCTACGGTTGTTTGGTATCGA 634
Query 868 TAATATTCTGCGGATACATAGTTTACGATACAGACAATCTGATCAAGA-GACACACGTAT 926
|||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||
Sbjct 635 TAATATTCTGCGGATACATAGTCTATGATACAGACAATCTGATCAA-ACGACACACGTAT 693
Query 927 GATGAGTATATTTGGGCAGCGGTTTCACTCTACCTAGACATCATCAACCTCTTCTTGTAT 986
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 694 GATGAGTATATTTGGGCAGCGGTTTCGCTCTACCTAGACATCATCAACCTCTTCTTGTAT 753
Query 987 CTTCTTACTGTG-TTGAGAGCCTTACAGAGATGATGATTATTAGGATGAGGTATTTAGCT 1045
||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 754 CTTCTTACTGTACTT-AGAGCCTTACAGAGATGATGATTATGAGGATGAAGTATTTAGCT 812
Query 1046 TATCG-GTCTCTTTAAAAATATGTAAATAAGAAAATAAAACTGTACATTTTTGTGGTTAC 1104
| || ||||||| |||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 813 TCTCTTGTCTCTT-AAAAATGTTTAAATAAGAAAATAAAATTGTACATTTTTGTGGTTA- 870
Query 1105 AGTTCACATGTTCATGTGAGTGATTGTAGAGGGAACACAGGAACTGTGGATCATGTAATA 1164
| | || | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 871 A-T------GT----G--AGTGATTGTAGAGGGAACACAAAAACTGTGGATCATGTAATG 917
Query 1165 ATTTATAACGAAAATGCCAAGGATGTGTCATGTGTGTAATGTCGCGAAAGACACCACGAG 1224
||| |||||||||||||||| | || ||||||||| ||| || || |||| ||||||
Sbjct 918 ATT-ATAACGAAAATGCCAA--A-GT---ATGTGTGTAGTGTAGCTAAGGACATCACGAG 970
Query 1225 AAGTGCAAGTCTTTTGTTTTTTCTCATAAGAAAAAAGGGATAATTGAAGCTTTT 1278
|||||||||||||| |||||| ||||||||||||| |||||||||||| |||||
Sbjct 971 AAGTGCAAGTCTTT-GTTTTT-CTCATAAGAAAAATGGGATAATTGAAACTTTT 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5