BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02700.1
Length=2306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943455 jgi|Araly1|943455|scaffold_603999.1 3157 0.0
Ahg934426 jgi|Araly1|934426|scaffold_402414.1 243 6e-63
Ahg490287 jgi|Araly1|490287|fgenesh2_kg.6__3421__AT4G02710.1 139 8e-32
> Ahg943455 jgi|Araly1|943455|scaffold_603999.1
Length=1983
Score = 3157 bits (1709), Expect = 0.0
Identities = 1891/1981 (95%), Gaps = 3/1981 (0%)
Strand=Plus/Plus
Query 60 TTAAATAGTTAAACTAGAAGATGAGCAGCAAAAGGGCATCACAATATCACCAAGTAGAAA 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TTAAATAGTTAAACTAGAAGATGAGCAGCAAAAGGTCATCACAATATCACCAAGTAGAAA 60
Query 120 TCCCTCCACCACAACCTTTCTTGAAATCACTAAAGAACACTCTCAATGAGATCCTTTTCG 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TCCCTCCACCACAACCTTTCTTGAAATCACTAAAGAACACTCTCAATGATATCCTTTTCG 120
Query 180 CCGACGATCCGTTCCGTAGAATCAGGAACGAATCGAAAACGTCGAAAAAGATCGAGTTAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGACGATCCGTTCCGTAGAATCAGGAACGAATCGAAAACGTCGAAAAAGATCGAGTTAG 180
Query 240 GGTTGAGACACGTGTTCCCTATCTTGGAATGGGCTCGTGGTTACAGTTTGGAGTATTTGA 299
||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 GGTTGCGACACGTGTTCCCAATCTTGGAATGGGCTCGTGGTTACAATTTGGAGTATTTTA 240
Query 300 AATCAGATGTTATCTCAGGGATAACAATTGCAAGTCTTGCTATTCCTCAAGGGATTAGCT 359
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATCCGACGTTATCTCAGGGATAACAATTGCAAGTCTTGCTATTCCTCAAGGGATTAGCT 300
Query 360 ATGCTCAGCTCGCTAATCTCCCTCCAATCCTTGGTCTTTACTCGAGCTTGGTGCCGCCGT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 ATGCTCAGCTCGCTAATCTCCCTCCAATCCTTGGTCTTTACTCGAGCTTGGTGCCGCCAT 360
Query 420 TGGTATACGCGATCATGGGAAGTTCAAGAGATTTAGCGGTGGGAACAGTGGCGGTGGCCT 479
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGTATACGCGGTAATGGGAAGTTCAAGAGATTTAGCGGTGGGAACAGTGGCGGTGGCCT 420
Query 480 CGCTGTTGACGGCTGCGATGTTGGGGAAAGAGGTAAACGCAGTGGTGAATCCAAAGCTTT 539
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 CGCTGTTGACGGCGGCGATGTTGGGGAAAGAGGTAAACGCAGTGAAGAATCCAAAGCTTT 480
Query 540 ACCTTCACTTAGCTTTCACCGCCACTTTCTTCGCCGGACTCATGCAAACCTGCCTTGGCC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 ACCTTCACTTAGCTTTCACCGCCACTTTCTTCGCCGGACTCATGCAAACCTGTCTTGGCC 540
Query 600 TCTTACGGTTAGGGTTCGTGGTGGAGATATTGTCGCACGCGGCGATTGTAGGGTTCATGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTACGGTTAGGGTTCGTGGTGGAGATATTGTCGCACGCGGCGATTGTAGGGTTCATGG 600
Query 660 GAGGAGCCGCAACAGTGGTGTGTCTGCAGCAACTGAAAGGATTACTTGGCCTCCATCATT 719
||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 GAGGAGCTGCGACGGTGGTGTGTCTGCAGCAACTGAAAGGATTACTTGGCCTCCATCACT 660
Query 720 TCACTCATTCCACCGATATCGTCACTGTTCTCCGCTCCATTTTTTCTCAATCTCATATGT 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 TCACTCATTCCACCGATATCGTCTCTGTTCTCCGCTCCATTTTTTCTCAATCTCATATGT 720
Query 780 GGAGATGGGAAAGTGGAGTGCTAGGGTGTTGCTTCCTAATCTTCCTTCTTACAACTAAAT 839
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 GGAGATGGGAGAGTGGAGTGCTAGGGTGTTGCTTCCTCGTCTTCCTTCTTACAACTAAAT 780
Query 840 ACATTAGCAAGAAGAGACCAAAGCTGTTCTGGATATCTGCAATGTCTCCACTTGTTTCTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACATTAGCAAGAAGAGACCAAAGCTGTTCTGGATATCTGCAATGTCTCCACTTGTTTCTG 840
Query 900 TCATTTTTGGAACCATTTTCCTTTACTTCCTCCATGACCAATTCCATGGTATCCAATTTA 959
||||| |||| ||| |||||||||||||||| |||| ||| ||||||| |||||| |||
Sbjct 841 TCATTCTTGGGACCCTTTTCCTTTACTTCCTTCATGCCCATTTCCATGACATCCAAATTA 900
Query 960 TCGGAGAACTAAAGAAAGGGATAAATCCACCGTCAATCACACATTTGGTTTTCACGCCAC 1019
|||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| |||
Sbjct 901 TCGGGGAACTAAAGAAAGGGATTAATCCACCGTCAATCACACATTTAGTATTCACGTCAC 960
Query 1020 CTTATGTCATGTTGGCTCTCAAAGTTGGCATTATCACTGGAGTCATAGCTCTCGCTGAAG 1079
||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||||||||||
Sbjct 961 CTTATGTTATGTTGGCTCTCAAAATCGGCATGATCACCGGAGTCATAGCTCTCGCTGAAG 1020
Query 1080 GTATAGCAGTGGGGAGAAGCTTTGCAATGTACAAGAATTACAATATAGATGGGAACAAAG 1139
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 GGATTGCAGTGGGGAGAAGCTTTGCAATGTACAAGAATTACAACATAGATGGGAACAAAG 1080
Query 1140 AGATGATAGCCTTTGGGATGATGAACATTCTTGGTTCCTTCTCCTCTTGCTATCTCACTA 1199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGATGATAGCCTTTGGAATGATGAACATTCTTGGTTCCTTCTCCTCTTGCTATCTCACTA 1140
Query 1200 CCGGGCCATTTTCACGTTCGGCGGTGAACTACAACGCGGGTTGCAAAACGGCGTTATCAA 1259
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 CCGGGCCGTTTTCACGTTCGGCGGTGAACTACAACGCGGGTTGCAAAACAGCGTTATCAA 1200
Query 1260 ACGTGGTGATGGCGGTTGCAGTGGCGGTGACGTTACTGTTCTTAACGCCGTTATTCTTCT 1319
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACGTGGTAATGGCGGTTGCAGTGGCGGTGACGTTACTGTTCTTAACGCCGTTATTCTTCT 1260
Query 1320 ACACGCCATTAGTAGTTCTGTCGTCGATCATAATCGCTGCCATGCTAGGCCTAGTCGACT 1379
||||||||||||| ||||| ||||||||||||||| | |||||||| ||||| |||||||
Sbjct 1261 ACACGCCATTAGTTGTTCTTTCGTCGATCATAATCACCGCCATGCTCGGCCTGGTCGACT 1320
Query 1380 ACGAAGCAGCCATTCATCTTTGGAAACTCGACAAGTTCGATTTCTTCGTTTGTCTCTCTG 1439
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1321 ACGAAGCAGCCATTCATCTTTGGAGACTTGACAAGTTCGATTTCTTCGTTTGTCTCTCTG 1380
Query 1440 CTTACTTGGGCGTTGTTTTTGGTACCATCGAAATTGGTCTCATCCTCTCCGTGGGAATAT 1499
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1381 CTTACTTAGGCGTCGTTTTTGGTACCATCGAGATTGGTCTCATCCTCTCCGTGGGAGTAT 1440
Query 1500 CAGTGATGAGGTTAGTGTTGTTCGTGGGAAGACCAAAGATTTATGTAATGGGAAACATTC 1559
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1441 CAGTGATGAGGTTAGTGTTGTTCGTTGGAAGACCAAAGATTTATGTAATGGGAAACATTC 1500
Query 1560 AAAACTCAGAAATATATAGGAACATTGAGCATTACCCTCAAGCCATCACTCGCTCTTCTC 1619
||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1501 AAAACACAGAAATATTTAGGAACATTGAACATTACCCTCAAGCCATCACTCTCTCTTCTC 1560
Query 1620 TTCTCATTCTCCACATCGATGGTCCTATTTACTTCGCCAACTCTACCTACTTGCGAGACA 1679
| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1561 TCCTCATTCTCCACATCGATGGCCCTATTTACTTCGCCAACTCTAGCTACTTGCGAGACA 1620
Query 1680 GAATTGGAAGGTGGATCGATGAAGAGGAAGATAAATTGAGAACTAGCGGAGATATCAGTC 1739
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1621 GAATTGGAAGGTGGATTGATGAAGAGGAAGATAAATTGAGAACTAGCGGAGAAATCAATC 1680
Query 1740 TACAATATATTGTACTCGACATGAGTGCTGTGGGGAACATCGACACGAGCGGTATAAGCA 1799
||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 1681 TACAATACATTGTTCTCGATATGAGTGCCGTGGGGAACATTGACACGAGCGGTATAAGCA 1740
Query 1800 TGCTTGAGGAACTCAACAAAATCCTGGGACGTAGAGAGCTTAAGCTAGTGATAGCGAACC 1859
|||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 1741 TGCTTGAGGAACTCAACAAATTCATGGGACGAAGAGAGCTTAAGCTAGTGATAGCGAACC 1800
Query 1860 CGGGAGCAGAGGTGATGAAGAAGCTAAGCAAGTCCACCTTCATTGAGAGCATTGGTAAAG 1919
| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1801 CAGGAGCAGAGGTGATGAAGAAGCTAAGCAAGTCCAACTTCATAGAGAGCATTGGTAAAG 1860
Query 1920 AACGGATTTATCTCACGGTGGCAGAAGCCGTCGCAGCTTGCGATTTCATGCTCCACACGG 1979
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1861 AACGGATTTATCTCACGGTGGCAGAAGCCGTCGCGGCGTGCGATTTCATGCTCCACACGG 1920
Query 1980 CTAAACCCGACTCGCCGGTACCGGAATTTAACAACGTTTAAGATTTCAT-A--TTGAAAA 2036
||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||
Sbjct 1921 CTAAACCCGACTCGCCGGTACCGGAATCTAACAACGTTTAAGATTTCTTCACATTGAAAA 1980
Query 2037 T 2037
|
Sbjct 1981 T 1981
> Ahg934426 jgi|Araly1|934426|scaffold_402414.1
Length=268
Score = 243 bits (131), Expect = 6e-63
Identities = 147/155 (95%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 415 GCCGTTGGTATACGCGATCATGGGAAGTTCAAGAGATTTAGCGGTGGGAACAGTGGCGGT 474
||||||||| |||||| | ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 2 GCCGTTGGTCTACGCGGTAATGGGAAGTTCAAGAGATTTACCGGTGGGAACTGTGGCGGT 61
Query 475 GGCCTCGCTGTTGACGGCTGCGATGTTGGGGAAAGAGGTAAACGCAGTGGTGAATCCAAA 534
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 62 GGCCTCGCTGTTGACTGCGGCGATGTTGGGGAAAGAGGTAAACGCAGTGGAGAATCCAAA 121
Query 535 GCTTTACCTTCACTTAGCTTTCACCGCCACTTTCT 569
|||||||||||||||||||||||||||||||||||
Sbjct 122 GCTTTACCTTCACTTAGCTTTCACCGCCACTTTCT 156
> Ahg490287 jgi|Araly1|490287|fgenesh2_kg.6__3421__AT4G02710.1
Length=3363
Score = 139 bits (75), Expect = 8e-32
Identities = 90/97 (93%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 2211 TCAAGGAGACTCTGGCTGCTGAACGCAACCACAAAACACAGACCGCTTCTTCGTCCTTTT 2270
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3363 TCAAGGAGACAGTGGCTGCTGAACGCAACCACAAAACGCAGACCGCTTCTTCGTCCTTTT 3304
Query 2271 CTTCATCGATACGCTTCTAGTTCTC-CCATAGATATA 2306
|||||||||||||||||| | || | |||||||||||
Sbjct 3303 CTTCATCGATACGCTTCTGGATC-CACCATAGATATA 3268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86845758600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5