BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02710.1
Length=3676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490287 jgi|Araly1|490287|fgenesh2_kg.6__3421__AT4G02710.1 4717 0.0
Ahg470287 jgi|Araly1|470287|fgenesh2_kg.1__241__AT1G03080.1 1057 0.0
> Ahg490287 jgi|Araly1|490287|fgenesh2_kg.6__3421__AT4G02710.1
Length=3363
Score = 4717 bits (2554), Expect = 0.0
Identities = 3122/3387 (92%), Gaps = 75/3387 (2%)
Strand=Plus/Plus
Query 341 ATGGAGATTGCAGCAAAGAGTAACTCGAAACGTATGTATTCATGGTGGTGGGATAGTCAC 400
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATTGCCGCAAAGAGTAACTCGAAACGTATGTATTCATGGTGGTGGGATAGTCAC 60
Query 401 AATACCCCCAAGAATTCTAAATGGCTTCAGGACAATCTCGCAGATATGGATAGTAATGTG 460
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct 61 AATACCCCCAAGAATTCTAAATGGCTTCAGGAGAATCTTGCAGATATGGATAATAATGTG 120
Query 461 AAGCAGATGATTAAGGTTCTTGAAGAAGATGCAGATTCTTTTGCCAGGCGAGCAGAGATG 520
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 121 AAGCAGATGATTAAGGTTCTTGAAGAAGATGCAGATTCCTTTGCTAGGAGAGCAGAGATG 180
Query 521 TATTACCGTAAACGTCCTGAGCTTATGAAATTAGTTGAAGAGTTCTATCGTGCATATCGT 580
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TATTACCGTAAACGTCCTGAGCTTATGAAATTAGTTGAAGAGTTCTACCGTGCATATCGC 240
Query 581 GCATTAGCTGAGAGGTATAATCATGCTACGGGCGTAATCCACAAGGCTCATGAGACTATA 640
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCTTTAGCTGAGAGATATAATCATGCAACGGGCGTAATCCACAAGGCTCATGAGACTATA 300
Query 641 GCAGAAGCGTTTCCAAACCAAGTTCCTTTGATATTTGGTGATGAGTCACATGGTGGTGCT 700
||||||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 301 GCAGAAGCGTTCCCAAACCAAGTTCCGTTGATATTCGGTGATGAGTCACATGTTGGTGCT 360
Query 701 TTGACAAATGATGTTGATCCACAAACACCGGACATGCCTCCTCCTTTCCGAGCTCGGGGT 760
|||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||
Sbjct 361 TTGACAAATGATGTTGATCCACAAACACCGGATATACTTCCTCCTTTTCGAGCTCGGGGT 420
Query 761 AACCCGGATGAGTTCCAACAAGATGCTTTGGGGTTCTCTTTATCTCATGTCCATGATGTA 820
||||| |||||||| ||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct 421 AACCCAGATGAGTTGCAAAAAGATGGTTTTGGGTTCTCTTTATCTCATGTCCATGATGTC 480
Query 821 AAGAGGAATATAGATTTTAGTGAAGAGCCTCTGTTTGTGAGTAATGGAAAAGCAAGAAAG 880
|||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||
Sbjct 481 AAGAAGAATATAGATTTTAGTGAAGAACCTCCGTTTGTGAGTAATGGCAAAGCAAG-AAG 539
Query 881 -GGACTGAATTTTAATGATCATGGAGATGGAAAAGGAAGAAATGGTCTT-AAGGATCATA 938
||||| ||||| |||| |||| ||||||||||||||||||| | || |||| |||||
Sbjct 540 AGGACTCAATTTCAATG---ATGGGGATGGAAAAGGAAGAAATGAT-TTCAAGGCTCATA 595
Query 939 TTCTTTCCGAATCTGAACGAGCTAGCAAAGCTGAGGCTGAAGTTGTGGCTTTAAAAGA-T 997
|||| || | ||||||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 596 TTCTATCAGGATCTGAACGGGCTAGCAAAGCTGAAGCTGAGGTTGTGGCTTTAAAAGACT 655
Query 998 TCCTTGTCTAAGATGCAGGCTGAAAAACAAGCTAGCTTAGCATTGTTTGAGAAGAATTTG 1057
|||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 656 CCCTT-TCTAAGATGCAGGTTGAAAAAGAAGCTAGCTTAGCACAGTTTGAGAAGAATTTG 714
Query 1058 GAGAGACTATCAAATCTAGAATCTGAAGTCTCTCGTGCACAGGCAGACTCAAGGGGAATT 1117
|||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||| ||
Sbjct 715 GAGAGACTGTCAAATCTAGAATCTGAAGTATCTCGTGCACAAGAAGACTCAAGGGGACTT 774
Query 1118 AATGACAGAGCCGCAAGTGCAGAAGCTGAGATCCAAACGCTCAGAGAAACCCTCTACAAA 1177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AACGACAGAGCCGCAAGTGCAGAAGCTGAGATCCAAACGCTCAGAGAAACCCTCTACAAA 834
Query 1178 CTAGAGTCTGAAAAGGAATCCAGCTTTCTTCAGTATCATAAATGCCTGCAAAAGATAGCT 1237
|||||||||||||||||||||||| |||||| |||| | |||||| |||||||| |||||
Sbjct 835 CTAGAGTCTGAAAAGGAATCCAGCCTTCTTCGGTATGAAAAATGCTTGCAAAAGGTAGCT 894
Query 1238 GATTTGGAAGATGGACTCTCTGTAGCCCATAAAGAAGCTGG-G--------GAGCGAGCC 1288
||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 895 AATTTGGAAGATGGACTCTCTGTAGCCCATAAGGAAGCTGGAGAAATAAATGAGCGAGCC 954
Query 1289 AGCAAAGCTGAAACTGAAACTCTCGCTTTGAAGCGGAGCCTTGCCAAGGCCGAAACTGAC 1348
|||||||||||| ||||| ||||||||||||||| ||||||||| || || |||||||||
Sbjct 955 AGCAAAGCTGAAGCTGAAGCTCTCGCTTTGAAGCAGAGCCTTGCTAAAGCAGAAACTGAC 1014
Query 1349 AAGGAAACTGCTCTTATTCAATACAGGCAATGCTTGAATACGATATCTAACCTAGAAGAG 1408
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 AAGGAAGCTGCTCTTGTTCAATACAGGCAATGCTTGAATACGATTTCTAACCTAGAAGAG 1074
Query 1409 AGACTAAGGAAGGCTGAGGAAGATGCAAGGCTTATCAATGAGCGGGCTGAAAAGGCTGGG 1468
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1075 AGACTGAGGAAGGCTGAGGAAGATGCAAGGCTTATCAATGAGCAGGCTGAAAAGGCTGGG 1134
Query 1469 GTAGAAGTTGAAAACTTGAAGCAAACAGTCTCGAAATTGATCAAGGATAAGGAAGCTTCT 1528
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1135 ATAGAAGTTGAAAACTTGAAGCAAACGGTCTCGAAATTGATCAAGGATAAGGAAGCTTCT 1194
Query 1529 GAACTTCAGTTCCAACAGTGCCTGAATATAATTGC-GAGTCTAAAAGTCAAACTACACCA 1587
||||||||||||||||||||||| ||||| ||||| || ||||||||| |||||||||||
Sbjct 1195 GAACTTCAGTTCCAACAGTGCCTAAATATTATTGCGGA-TCTAAAAGTAAAACTACACCA 1253
Query 1588 TGCTCAAGAAGAAACACAGAGTCTTAGCCATGAAATAGAGGATGGAGTTGCTAAGTTAAA 1647
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1254 CGCTCAAGAAGAAACACAAAGTCTTAGCCTTGAAATAGAGGATGGAGTTGCTAAGTTAAA 1313
Query 1648 GTTTTCTGAGGAGAAATGTCTTTTGCTTGAGAGATCAAATCAGAATCTCCACTCTGAGCT 1707
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1314 GTTTTCTGAGGAGAAATGTCTTGTGCTTGAGAGATCAAATCAGAATCTCCACTCTGAGCT 1373
Query 1708 GGATAGTCTCTTGGAGAAACTGGGGAATCAAAGTCAGAAGCTCACAGAGAAACAAACCGA 1767
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 1374 GGATAGTCTCTTGGAGAAACTGGGGAATCAAAGTCAGAAGTTCACAGAGAAGCAAACAGA 1433
Query 1768 GCTAGTCAAATTGTGGAGCTGTGTGCAAGCAGAGCATTTGCATTTCCAGGAAGCTGAGAC 1827
||| |||||||||||||| ||||| |||| ||||||||||| |||||| |||||||||||
Sbjct 1434 GCTGGTCAAATTGTGGAGTTGTGTACAAGAAGAGCATTTGCGTTTCCAAGAAGCTGAGAC 1493
Query 1828 CGCGTTTCAAACCCTACAGCAATTGCACTCTCAGTCTCAAGAGGAGCTAAATAATTTGGC 1887
||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1494 CGCATTTCAAACCCTACAGCAATTGCACTCTCAGTCTCAAGGGGAGCTCAATAATTTGGC 1553
Query 1888 TGTGGAACTTCAAACC-GTGTCTCAGATCATGAAAGACATGGAGATGCGAAACAATGAGT 1946
|||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||
Sbjct 1554 TGTGGAACTTCAAACCAG-GTCTCAGATCATGAAAGACATGGAGAACCGAAACAGTGAGT 1612
Query 1947 TGCATGAGGAACTTGAGCAAGCCAAGGTTGAGAACAAAGGTCTCAATGACCTCAATTTCA 2006
||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||
Sbjct 1613 TGCATGAGGAAATTGAGCAAGTCAAGATTGAGAACAAAGGTCTCAATGAGCTCAATTTCA 1672
Query 2007 CTATGGAAAAGCTTGTTCAGAAAAACCTTATGCTGGAAAAATCTATATCTTATTTGAATT 2066
|| | ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1673 CT-T-----CGCTTGTTGAGAAAAACCTTATGCTGGAAAAATCTATATCTGATTTGAATT 1726
Query 2067 CTGAGTTGGAATCATTCAGAAGGAAGCTGAAGACGTTTGAGGAAGCTTGTCAGTCACTCT 2126
|||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1727 CTGAATTAGAATCAATCAGAAAGAAGCTGAAGACGTTTGAGGAAGCTTGTCAGTCACTCT 1786
Query 2127 CAGAAGAGAAATCATGTCTTATTTCTGAAAACCAGCACAATGTTATTGAGAACACTGTTC 2186
||||||||||||||||||||||||||||||||||||| | || |||||||||| |||||
Sbjct 1787 CAGAAGAGAAATCATGTCTTATTTCTGAAAACCAGCATAGTGCCATTGAGAACATTGTTC 1846
Query 2187 TTATTGAATGGCTTCGGCAACTTCGGTTAGAAGCAGTTGGTATAGCAACAGAGAAGACTG 2246
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1847 TTCTTGAATGGCTTCGGCAACTTAAGTTAGAAGCAGTTGGTATAGCAACAGAGAAGAATG 1906
Query 2247 ACCTTGAGGGTAAGGCAAAGACGATTGGTGATAAGTTAACAGATGCAGAAACTGAAAATT 2306
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1907 ACCTTGAGGGTAAGGCAAAGAAGATTGGTGCTAAGTTAACAGATGCAGAAACTGAAAATT 1966
Query 2307 TGCAGCTAAAGAGAAACCTGCTTTCTATCAGATCGGAGAAACATCACTTAGAAGATGAAA 2366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 TGCAGCTAAAGAGAAACCTGCTTTCTATCAGATCGGAGAAACATCACTTAGAAGATGAAA 2026
Query 2367 TTACTAATGTGAAGGATCAGTTACATGAGAAGGAGAAGGAATTTGAAGAAATCAAA-ATG 2425
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 2027 TTACTAATGTGAATAATCAGTTACGTGAGAAGGAGAAGGAATTTGAAGAAATCAAAGA-G 2085
Query 2426 GAGAAAGAAAAGCTGA-TACAAGAGGTTTTCAAAGAGAGGAAACA-GGTTGAATTGTGGG 2483
|||||||||||||||| | |||||||||||||||||||||| || || |||||||||||
Sbjct 2086 GAGAAAGAAAAGCTGAAT-CAAGAGGTTTTCAAAGAGAGGAG-CAAGGCTGAATTGTGGG 2143
Query 2484 AGTCTCAAGCTGCGACATTCTTCTGCGATAAGCAAATCTCGGTTGTACATGAAACATTGA 2543
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2144 AGTCTCAAGCTGCGACATTCTTCTGCGATAAGCAAATCTCTGCTGTACATGAAACATTGA 2203
Query 2544 TTGAAGCAACGACACGTGAGCTT-GCTGAAGCATGCAAGAACCTTGAAAGTAAAAGCGCA 2602
||||||| |||||||| ||| || |||||||| |||||||||||||||||||||||||||
Sbjct 2204 TTGAAGCGACGACACGGGAG-TTAGCTGAAGCCTGCAAGAACCTTGAAAGTAAAAGCGCA 2262
Query 2603 TCGAGAGATGCGGATATTGAAAAG-CTTAAGCGAAGCCAAACTATAGTCTTGTTGAATGA 2661
|||| ||||| | ||||||||||| || || |||||||| |||| ||||||||||||||
Sbjct 2263 TCGAAAGATGTGAATATTGAAAAGTCTAAAA-GAAGCCAAGCTATTGTCTTGTTGAATGA 2321
Query 2662 AAGCATTAAATCTTTGGAGGATTATGTTTTCAC-ACACCGTGAATCTGCGGGTGAAGTTT 2720
|||||||||| |||||||||||||||||||| | | |||||||||||| |||| |||
Sbjct 2322 AAGCATTAAAGCTTTGGAGGATTATGTTTTCGTGAGTC-GTGAATCTGCGGATGAAATTT 2380
Query 2721 CAAAGGGAG-CTGATTTGATGGATGAATTTCTCAAGTTGGAAGGTATGTGTTTGAGAATC 2779
||||||| | | |||| |||||| || | | ||||||||||||||||||||| ||||||
Sbjct 2381 CAAAGGGTGAC-GATTCAATGGATAAACTCCCCAAGTTGGAAGGTATGTGTTTAAGAATC 2439
Query 2780 AAAGCTATCGCAGAAGCAATAATGGAAAAGGAAAAGTTTTTGATGCTTGAGAACACTAAT 2839
|||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 2440 AAAGCTATTGCAGAGGCAATAATGGAAAAGGAGAAGCTTTTGATGCTTGAGAACACGAAT 2499
Query 2840 ACCTACTCTATGCTTGAGGCGTCATTGAAACAAATCAAAGAATTGAAGACAGGAGGAGGA 2899
||||||||||||||||||||||| ||||||||||||||||||| || || ||||| |||
Sbjct 2500 GCCTACTCTATGCTTGAGGCGTCACTGAAACAAATCAAAGAATTAAAAACGGGAGGCGGA 2559
Query 2900 AGAAGCATGAGGAAGCAAGATGGAGGAAGTGGCAGAATGCGGAAGCAGAGTCACGAAACC 2959
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2560 AGAAGCATGAGGAAGCAAGATGGAGGAAGTGGCAAAATGCGGAAGCAGAGTCACGAAATC 2619
Query 2960 GAGATGGTAATGAAAGATATTGTGCTTGATCAAACGTCTGATGGATCATCGTATGAGATT 3019
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2620 GAGATGGTAATGAAAGATATTGTGCTAGATCAAACGTCTGATGGATCATCGTACGAGATT 2679
Query 3020 GTAAGTAAGAAAGGGAATTCGGAGTTGGATCATCTCGGTTTTGTTGAGCTAAAGCCAGTG 3079
|||||||||||||| |||| |||||| ||||||| ||||||||||||||| |||||||||
Sbjct 2680 GTAAGTAAGAAAGGAAATTTGGAGTTAGATCATCACGGTTTTGTTGAGCTGAAGCCAGTG 2739
Query 3080 AAGACTCACAAGACAGAAACT------AAAGCC--------T---T----GTCTGAAGAG 3118
||||||||||||||||||||| |||||| | | ||||||||||
Sbjct 2740 AAGACTCACAAGACAGAAACTGTGGTTAAAGCCGCCAAAGGTAAATCCTTGTCTGAAGAG 2799
Query 3119 TCACTGATTGTCGAGAAAGT-AGAGATTTTCGACGGATTCATGGATCCAAACCGTGAAGT 3177
|| ||||||||||| || || |||||||||||| |||||||||||||| ||| | |||||
Sbjct 2800 TCGCTGATTGTCGATAA-GTTAGAGATTTTCGATGGATTCATGGATCCGAACAGAGAAGT 2858
Query 3178 AAACAAGAGAAGAGTTCTAGAAAGACTTGATTCGGATTTACAGAAGCTGGAGAATCTTCA 3237
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2859 AAACAAGAGAAAAGTTCTAGAAAGACTTGATTCGGATTTACAGAAGCTGGAGAATCTTCA 2918
Query 3238 GATCACTGTAGAAGATTTGAAAAGCAAAGTCGAAACAGTGGAGAAGGAAAAGACGAAAGT 3297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2919 GATCACTGTAGAAGATTTGAAAAGCAAAGTCGAAACAGTGGAGAAGGAAAAGACGAAAGT 2978
Query 3298 AGGAGAAAACGAGTATAAAACGATCAAAGGACAGCTTGAAGAAGGAGAGGAAGCAATAGA 3357
|||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2979 AGGAGAAAACGAGTATGAAACGATCAAAGGACAGCTCGAAGAAGCAGAGGAAGCAATAGA 3038
Query 3358 GAAACTGTTTACTGTCAATCGAAAGCTGACCACAAAAGCCGAATCAGAGAAGGATATTGA 3417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3039 GAAACTGTTTACTGTCAATCGAAAGCTGACCACAAAAGCCGAATCAGAGAAGGATATTGA 3098
Query 3418 TAGAAGAAGGAGAATATTCGAACATGCGAGGAGAGGAACAGAGAAGATTGGGAGGTTACA 3477
||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct 3099 TAGAAGAAGGAGAATATACGAACATGCGAGAAGAGGATCAGAGAAGATTGGGAGGTTACA 3158
Query 3478 GTCGGAGATACAGAGGATTCAGTTTCTGTTGATGAAGCTTGAAGGAGAGAGAGAGCATCG 3537
|| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 3159 GTTGGAGATACAGAGGATTCAGTTTCTCTTGATGAAACTTGAAGGAGAGAGAGAGCATCG 3218
Query 3538 A-CTTAGGTCGAAGATTTCAGATACCAAA--G----TTCTTCTTCGAGACTATATCTATG 3590
| || |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 3219 AGCT-AGGTCGAAGATTTCAGATACCAAATCGAAAGTTCTTCTTCGAGACTATATCTATG 3277
Query 3591 G-GAGAACTAGAAGCGTATCGATGAAGAAAAGGACGAAGAAGCGGTCTGTGTTTTGTGGT 3649
| | || | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3278 GTG-GATCCAGAAGCGTATCGATGAAGAAAAGGACGAAGAAGCGGTCTGCGTTTTGTGGT 3336
Query 3650 TGCGTTCAGCAGCCAGAGTCTCCTTGA 3676
||||||||||||||| ||||||||||
Sbjct 3337 TGCGTTCAGCAGCCACTGTCTCCTTGA 3363
> Ahg470287 jgi|Araly1|470287|fgenesh2_kg.1__241__AT1G03080.1
Length=5301
Score = 1057 bits (572), Expect = 0.0
Identities = 1350/1709 (79%), Gaps = 120/1709 (7%)
Strand=Plus/Plus
Query 360 GTAACTCGAAACGTATGTATTCATGGTGGTGGGATAGTCACAAT-ACCCCCAAGAATTCT 418
||||||| ||||| ||||| |||||||||||||||||| || | |||||||| ||
Sbjct 20 GTAACTCTAAACG---CTATTCTTGGTGGTGGGATAGTCAC-ATAAGTCCCAAGAACTCC 75
Query 419 AAATGGCTTCAGGACAATCTCGCAGATATGGATAGTAATGTGAAGCAGATGATTAAGGTT 478
|||||||||||||| ||||| ||||||||||||| || || ||||| ||||| ||||||
Sbjct 76 AAATGGCTTCAGGAGAATCTTACAGATATGGATAGCAAAGTCAAGCAAATGATCAAGGTT 135
Query 479 CTTGAAGAAGATGCAGATTCTTTTGCCAGGCGAGCAGAGATGTATTACCGTAAA-CGTCC 537
|||||||||||||||| |||||||| ||||||||||| |||||||| | ||| || ||
Sbjct 136 ATTGAAGAAGATGCAGACTCTTTTGCTAGGCGAGCAGAAATGTATTA-CAAAAAGCGGCC 194
Query 538 TGAGCTTATGAAATTAGTTGAAGAGTTCTATCGTGCATATCGTGCATTAGCTGAGAGGTA 597
||||||||||||| | ||||| ||||| ||||| |||||||||||||| ||||| || ||
Sbjct 195 TGAGCTTATGAAACTGGTTGAGGAGTTTTATCGAGCATATCGTGCATTGGCTGAAAGATA 254
Query 598 TAATCATGCTACGGGCG-TAATCCACAAGGCTCATG-AGACTATAGCAGAAGCGTTTCCA 655
||||||| || || | || || | | ||||| | ||||||| |||||||| || |||
Sbjct 255 CGATCATGCCACCGGTGTTATTCGTC-ATGCTCA-GCAGACTATGGCAGAAGCCTTCCCA 312
Query 656 AACCAAGTTCCTTTGATATTTGGTGATGAGTCACATGGTGGTGCTTTGACAAATGATGTT 715
||||||| || |||| |||||||| ||||| | | || | ||| || ||||| ||
Sbjct 313 AACCAAGACCCCATGATGTTTGGTGACGAGTCGCCTCTTGCTTCTTCCACCGATGATTTT 372
Query 716 GATCCACAAACACCGGACATG-CCTCCTCCTTTCCGAGCTCGGGGTAACCCGGATGAGTT 774
||||||||||| || || | | ||| ||| ||||||||| | | |||| ||||| ||
Sbjct 373 GATCCACAAACGCCTGAGA-GTTATCCACCTATCCGAGCTCCAGTTTACCCCGATGATTT 431
Query 775 -CCAACAAGATGCTTTGGGG-TTCTCTTTATCTCATGTCCATG-A-TGTAAAGAGGAATA 830
| || ||| | |||||||| || |||| |||||| | | | | || ||| | ||||
Sbjct 432 ACGAA-AAGGTACTTTGGGGATT-TCTTCCTCTCAT-TTGA-GTACCGTTAAGCGCAATA 487
Query 831 TAGATTTTAGT-GAAGAGCCTCTGT-T-TGTG-AGT---AATGG----AAAA--GC-AA- 875
||| || | | ||||| |||| || | || | ||| || || |||| || ||
Sbjct 488 TAGCCTTCA-TGGAAGACCCTCAGTCTGTGAGTAGTGGGAAAGGTTTTAAAACTGCAAAG 546
Query 876 G--A--AAGGGACTGAATTTTAATGATCATGGAGATGGAAAAGGAAGAAATGGTCTTAAG 931
| | |||||||||||||| |||| ||| |||||||||| ||||||| | | ||||
Sbjct 547 GCAAGGAAGGGACTGAATTTCAATG---ATGTTGATGGAAAAGAAAGAAAT-G-C-TAAG 600
Query 932 GATCATATTCTTTCCGAATCTGAACGAGCTAGCAAAGCTGAGGCTGAAGTTGTGGCTTTA 991
| ||||||| ||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 601 G------TTCTTTCAGAATCTGAACGCGCAAGCAAAGCTGAGGCTGAAATTGTGGCTTTA 654
Query 992 AAAGATTCCT-TGTCT-AAGATGCAGGCTGAAAAACAAGCTAGCTTAGCAT-TGTTTGAG 1048
||||| | || | ||| ||| ||||||||||||| ||||||||||||| | ||||||
Sbjct 655 AAAGA-TGCTCTCTCTAAAG-TGCAGGCTGAAAAGGAAGCTAGCTTAGC-TCAGTTTGAT 711
Query 1049 AAGAATTTGGAGAGACTATCAAATCTAGAATCTGAAGTCTCTCGTGCACAGGCA-GACTC 1107
|||||||||| | ||| || ||| | || |||||||| ||||||||||| | | |||||
Sbjct 712 CAGAATTTGGAAAAACTGTCTAATTTGGAGTCTGAAGTATCTCGTGCACAAG-AGGACTC 770
Query 1108 AAGGGGAATTAATG-ACAGAGCCGCAAGTGCAGAAGCTGAGATCCAAACGCTCAGAGAAA 1166
||||| || || || ||||| |||| || ||||||||| || ||||||||||||||
Sbjct 771 TAGGGGGCTTGTTGAAC-GAGCCACAAGAGCCGAAGCTGAGGTCGAAACGCTCAGAGAAT 829
Query 1167 CCCTCTA-CAAACTAGA-GTCTGAAAAGGAATCCAGCTTTCTTCAGTATCATAAATGCCT 1224
||||| | |||| |||| || |||||||| |||||||||||||||||||| |||| ||
Sbjct 830 CCCTC-AGCAAAGTAGAGGT-TGAAAAGGGGTCCAGCTTTCTTCAGTATCAGCAATGTCT 887
Query 1225 GCAAAAGATAGCTGATTTGGAAGAT-GGACTCTCTGTAGCCCATAAAGAAGCT---G--G 1278
|||||| |||||||||||||| ||| | | | ||| ||||||| || || ||| | |
Sbjct 888 GCAAAACATAGCTGATTTGGAGGATCGCA-TTTCTCTAGCCCAGAAGGAGGCTGGAGAAG 946
Query 1279 --G--GAGCGAGCCAGCAAAGCTGAAACTGAAACTCTCGCTTTGAAGCGGAGCCTTGCCA 1334
| ||||||||||||| ||| ||| |||||| ||| | |||||| |||||||
Sbjct 947 TAGATGAGCGAGCCAGCAGAGCCGAAGCTGAAATTCTATCACTGAAGCAAAGCCTTG-TT 1005
Query 1335 AG-GCCGAAACTGACAAGGAAACTGCTCTTATTCAATA-CAGGCAATGCTTGAATACGAT 1392
|| |||| |||||||||||| |||||||| ||||||| || ||||||||||| || ||
Sbjct 1006 AGATCCGATACTGACAAGGAAGCTGCTCTTGTTCAATATCA-ACAATGCTTGAAAACCAT 1064
Query 1393 ATCTAACCTAGAAGAGAGACT-AAGGAAGGCTGAGGAAGATG-CAAGGCTT-ATCAATGA 1449
||||||||| |||||||| | | |||||||||||||| | ||||| || | |||| |
Sbjct 1065 ATCTAACCTGGAAGAGAGGTTGCA-CAAGGCTGAGGAAGA-GTCAAGG-TTAACCAATCA 1121
Query 1450 GCGGGCTGAAAAGGCTG-GGGTAGAAGTTGAAAACTTGAAGCAAACA-GTCTCGAAATTG 1507
|||||| ||||| |||| |||| |||||||||| ||||||||||| | || || |||||
Sbjct 1122 GCGGGCAGAAAATGCTGAGGGT-GAAGTTGAAAGCTTGAAGCAAA-AGGTTTCCAAATTA 1179
Query 1508 A-TCAAGGATAAGGAAGCTT-CTGAACTTCAGTTCCAACAGTGCCTGAATATAATTGCGA 1565
| | || || || ||||||| | ||||| || | ||||||||| ||| | | |||||| |
Sbjct 1180 ATTGAA-GAAAACGAAGCTTAC-GAACTCCAATACCAACAGTGTCTGGACACAATTGC-A 1236
Query 1566 G-TCTAAAAG-TCAAACTACACCATGCTCAAGAAGAAACACAGAGTCTTAGCCATGAAAT 1623
| | | |||| |||| || ||||||||||||||||| || || || |||| ||||||
Sbjct 1237 GAT-TTAAAGCTCAAGCTGTTTCATGCTCAAGAAGAAACTCAAAGGCTCAGCCGTGAAAT 1295
Query 1624 AGAGGATGGAGTTGCTAAGTTAAAGTTTTCTGAGGAGAAATGTCTTTTGCTTGAGAGATC 1683
|||||||||||||||||||||||| ||| | ||||| |||||| || |||||||||||||
Sbjct 1296 AGAGGATGGAGTTGCTAAGTTAAAATTTGCAGAGGAAAAATGTGTTGTGCTTGAGAGATC 1355
Query 1684 AAATCAGAATCTCCACTCTGAGCTGGATAGTCTCTTGGAGAAACTGGGGAATCAAAGTCA 1743
|||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1356 AAATCAAAATCTACACTCTGAGCTGGATGGTCTATTGGAGAAACTGGGGAATCAAAGTCA 1415
Query 1744 -GAAGCTCACAGAGAAACA-AACCGAGCTAGTCAA-ATTGTGGAGCT-GTGTGCAAGCAG 1799
|| ||||||||||||||| || ||| | | || |||||||| || |||| |||| ||
Sbjct 1416 TGA-GCTCACAGAGAAACAGAAA-GAGATGGG-AAGATTGTGGA-CTTGTGTACAAGAAG 1471
Query 1800 AGCATTTGCA-TTTCCAGGAAGCTGAGACCGCGTTTCAAACCCTACAGCAATTGCACTCT 1858
| || |||| ||| ||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1472 AACACTTGCGCTTTAT-GGAAGCTGAGACCGCTTTTCAAACCCTACAACAATTACACTCT 1530
Query 1859 CAGTCTCAAGAGGAGCTAAATAATTTGGC-TGTGGAACTTCAAACC-GTGTCTCAGATCA 1916
|||||||| |||||||||| | |||||| | ||||||| |||| | | |||||| |||
Sbjct 1531 CAGTCTCAGGAGGAGCTAAGCACTTTGGCAT-TGGAACTGCAAAACAG-GTCTCAAATCC 1588
Query 1917 TGAAAGACATGGAGATGC--GAAACAATGAGTTG-CATGAGGAACTTGAGCAAGCCAAGG 1973
||||||| ||||| | || | ||||||| ||| || |||||| || || ||||||| |
Sbjct 1589 TGAAAGATATGGA-A-GCCCGTAACAATG-GTTTACAGGAGGAAGTTCAGGAAGCCAAAG 1645
Query 1974 TTGAGAACAAAGGTCTCAATGACCTCAAT 2002
||| |||| | |||||||| ||||||
Sbjct 1646 ACCAGAGCAAAAGCCTCAATGAGCTCAAT 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138872083877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5