BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02715.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943453 jgi|Araly1|943453|scaffold_603997.1 1002 0.0
> Ahg943453 jgi|Araly1|943453|scaffold_603997.1
Length=658
Score = 1002 bits (542), Expect = 0.0
Identities = 607/639 (95%), Gaps = 1/639 (0%)
Strand=Plus/Plus
Query 438 TACTGTTGACAGTATCTCGAAATGGAAACGCTTATTGTAGCTGTGGAACATAGGGATCAA 497
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TACTGTTGACAG-ATCTCGAAATGGAAACGCTTATTGTAGCTGTGGAACATAAGGATCAA 59
Query 498 TATTATGGGAAGAAATCTCTTGGACATGATCGTTTTAGATCAGCTCCTTCCAAAACTTTT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 TATTATGGGAAGAAATCTCTTGGACATGATCGTTTTAGATCAGCTCCTTCCAAAAATTTT 119
Query 558 AGGCAGATCAATTGCAGAACTTTTCAATCTGGTGTGGGTTTGCTTCCAAGACCTAAGAGA 617
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AGGCAAATCAATTGCAGAACTTTTCAATCTGGTGTGGGTTTGCTTCCGAGACCTAAGAGA 179
Query 618 ACTTCTTCAACACCTTTAACCAAAGGAGCTCTTTCTCAAGTTCAGTCTCCTCGTTCTCCT 677
|| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 180 ACGTCTTCAACACCTTTAACCAAAGGAGCTCTTCCTCAAGTTCAGTCTCCGCGTTCTCCT 239
Query 678 AAGTCCGTTTTACCGGTTTTTCATCATCCATCTGTTGACAGTGGTAGAACCAGTCCCATT 737
||||||||||| ||||||||| ||| || || || ||||| | ||||||||||||||||
Sbjct 240 AAGTCCGTTTTGCCGGTTTTTAATCCTCTTTCGGTAGACAGCGCTAGAACCAGTCCCATT 299
Query 738 CCAATTGCTAATTGCAGAGGTTCTCAGATCCGTAGGTGTTCTAGTGAGTTTGTTGACAAA 797
||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 CCAATTGCTAACAGCAGAGCTTCTCAGATCCGTAGGTGTTCTAGTGAATTTGTTGACAAA 359
Query 798 AGGAGAAGCCTTTCTTATTCTGAGCTATGGGCAGGACCTACTTACTCTAACTCACCTCCA 857
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 360 AGGAGAAGCCTTTCTTACTCTGAGCTATGGGCAGGACCTACTTACTCCAACTCGCCTCCA 419
Query 858 CCTGCTTCTGTGCCGATTCCTAAGTTTTCTCTCCAGCAAAAGAGGACGGTATCTTTGACC 917
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 CCTGCTTCTGTGCCGATTCCTAAGTTTTCTCTCCACCAAAAGAGGACGGTATCTTTGACC 479
Query 918 TTTCCTGCTCCTGACTCTGCTGTTGATATTCGTGAAGTTGCTAAGTCTGCACCAGTTTCT 977
|||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 480 TTTCCTGCTCATGACTCTGCTGTTGATATTCGTGAAGTTGCTAAGTCTGCGCCGGTTTCT 539
Query 978 CCAACCTCATCTGGTGACAATCCTTTTCGTAGTACTGTCTCTGCCACTATGACACTGCGT 1037
|||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 540 CCAACCTCATCTGGTGACAACCCTTTTCATTGTACTGTCTCTGCCACTATGACACTGCGT 599
Query 1038 CGCATGCTCAATCTTGAGCTTGAGACTGCAGATGAATGA 1076
||||||||||||||||||||||||||||| |||||||||
Sbjct 600 CGCATGCTCAATCTTGAGCTTGAGACTGCCGATGAATGA 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5