BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02720.1
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490285 jgi|Araly1|490285|fgenesh2_kg.6__3419__AT4G02720.1 1749 0.0
> Ahg490285 jgi|Araly1|490285|fgenesh2_kg.6__3419__AT4G02720.1
Length=1330
Score = 1749 bits (947), Expect = 0.0
Identities = 1214/1332 (91%), Gaps = 61/1332 (5%)
Strand=Plus/Plus
Query 23 GTCGTCGTCGGAGTGAATTAGGGATTCGAGAATGACGATGAACTCGCTTCCGAGGAGATT 82
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GTCGTCGTCGGAGTGAATTAGGGATTCGAGAATGACGATGAACTCGCTTCCGAGAAGATT 60
Query 83 TGGGAAGAATCATGGCTAT-TTGGATCGAGATTATCGAAACGGAA-GACGATCTGGTTCA 140
||||||||||||||||||| || |||||||||||||| ||||||| || |||||||||||
Sbjct 61 TGGGAAGAATCATGGCTATCTT-GATCGAGATTATCGTAACGGAAGGA-GATCTGGTTCA 118
Query 141 GATTCCGATGAAGAATTGAAGGGATTGAGTCACGAAGAGTATAGGAGGCAGAAACGGCTT 200
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 119 GATTCCGATGAAGAATTAAAGGGATTGAGTCACGAGGAATATAGGAGGCAGAAACGGCTT 178
Query 201 AAGATGAGGAAATCAGCCAAGTTCTGCTTTTGGGAGAACACACCGAGTCCACCTAGAGAT 260
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 AAGATGAGGAAATCGGCCAAGTTCTGTTTTTGGGAGAACACACCGAGTCCACCTAGAGAT 238
Query 261 CAGAACGAGGATTCCGATGAGAACGCCGACGAGATTCAGGACAAGAACGGCGGCGAAAGA 320
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 239 CAGAACGAGGATTCCGATGAGAACGTCGACGAGATTCTGGACAAGAACGGCGGCGAAAGA 298
Query 321 GATGATAATTCGAAAGGGAAAGAAAGGAAAGGT-AA----A-TCT--G-A--C----TCG 365
||| ||||||||| ||||||||||||||||||| || | ||| | | | |||
Sbjct 299 GATAATAATTCGAGAGGGAAAGAAAGGAAAGGTAAATCTGATTCTGGGAAGTCAGATTCG 358
Query 366 GAATCTGAATCTGATGGTTTGAGATCTAGGAAGAGGAAGAGTAAGAGCTCGAGGTCTAAG 425
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 GAATCTGAATCTGATGGTTTGAGATCTAGGAAGAGGAAGAGTAAGAGCTCTAGGTCTAAG 418
Query 426 CGCAGGAGAAAGAGATCTTATGACAGCGATAGTGAATCCGAAGGGAGTGAGAGTGATTCg 485
|||||| ||| ||||||||||| |||||||||||||||| | | ||||||||||||
Sbjct 419 CGCAGGCGAAGGAGATCTTATGGTAGCGATAGTGAATCCG-A---A--GAGAGTGATTCG 472
Query 486 gaagaggaagataggagacgaaggaggaagagttcttctaagaggaagaagagtagaagC 545
||||||||||||||||||||||| |||||||| |||| | | |||||||| | |||
Sbjct 473 GAAGAGGAAGATAGGAGACGAAGAAGGAAGAG---TTCT-A-A-GAAGAAGA--A-AAGT 523
Query 546 AGCCGTAGTTTTAGGAAAAAGCGAAGTCA-TAGGAGAAAGACGAAATACAGTGACTCTGA 604
| | || |||||||||||||||||| || |||||||||| |||||||||||||||
Sbjct 524 A---GAAG---TAGGAAAAAGCGAAGTCATTA-TAGAAAGACGAGATACAGTGACTCTGA 576
Query 605 TGAGAGCAGCGATGAAGATAGT-AA----A-G---CTGAGATTAGTGCTTCTTCGTCTGG 655
|||||||||||||| ||||||| || | | |||||||||||||||||||||||||
Sbjct 577 TGAGAGCAGCGATGGAGATAGTAAAGCTGAGGAATCTGAGATTAGTGCTTCTTCGTCTGG 636
Query 656 GGAGGAAGAAGATACCAAGTCAAAGAGCAAGAGGCGGAAGAAATCTTCGGATTCTAGTTC 715
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 637 GGA-G--GAAGATACCAAGTCAAAGAGCAAGAGGCGGAAGAAATCTTCGGGTTCTAGCTC 693
Query 716 AAAACGAAGCAAGGGAGAGAAGACGAAGTCAGGGAGT-GACAGCGATGGTACT-GAGGA- 772
||||||||||||| | |||| |||||||||| || | || |||||||||| | |||||
Sbjct 694 GAAACGAAGCAAGGTAAAGAAAACGAAGTCAGAGACTGGA-AGCGATGGTA-TAGAGGAG 751
Query 773 -A-GATTCGAAGATGCAAGTAGACGAAACGGTGAAGAACACTGAGCTAGAACTTGATGAA 830
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 752 GATGATTCGAAGATGCAAGTAGAAGAAACGGTGAAGAACACTGAGCTTGAACTTGATGAA 811
Query 831 GAAGAGTTGAAGAAGTTCAAAGAGATGATTGAATTAAAGAAGAAATCTTCAGCTGTTGAT 890
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GAGGAGTTGAAGAAGTTCAAAGAGATGATTGAATTAAAGAAGAAATCTTCAGCTGTTGAT 871
Query 891 GAAGAGGAAGAAGAAGGTGATGTTGGTCCAATGCCATTACCTAAAGCTGAAGGTCACATC 950
|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GATGAAGAAGAAGAAGCTGATGTTGGTCCAATGCCATTACCTAAAGCTGAAGGTCACATC 931
Query 951 AGTTATGGTGGTGCTTTAAGACCCGGTGAAGGAGACGCCATTGCACAGTATGTTCAGCAA 1010
||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct 932 AGTTACGGTGGTGCTTTAAGGCCTGGTGAAGGAGATGCCATAGCACAGTATGTTCAACAA 991
Query 1011 GGTAAACGTATCCCACGTAGAGGAGAAGTGGGTCTTAACGCTGAAGAGATTCAGAAGTTT 1070
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 992 GGTAAACGTATTCCTCGTAGAGGAGAAGTGGGTCTTAATGCTGAAGAGATTCAGAAGTTT 1051
Query 1071 GAGGATCTTGGTTATGTGATGAGTGGAAGTAGGCATCAAAGGATGAATGCTATTCGTATT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 GAGGATCTTGGTTATGTGATGAGTGGAAGTAGGCATCAAAGGATGAATGCTATTCGTATT 1111
Query 1131 AGAAAAGAAAACCAGGTTTACAGTGCTGAAGACAAACGGGCATTGGCCATGTTTAACTAC 1190
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1112 AGAAAGGAAAACCAGGTTTACAGTGCTGAAGACAAACGAGCATTGGCCATGTTTAACTAC 1171
Query 1191 GAGGAGAAGGCGAAGCGCGAGGCTAAGGTTATGTCTGATCTGCAGCGGCTTGTGCAGCGC 1250
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1172 GAGGAGAAGGCCAAGCGCGAGGCTAAGGTTATGTCTGATCTGCAACGGCTTGTGCAGCGC 1231
Query 1251 CATATGGGAGAAGAGGTGGGGCCAAATCATGACCCTTTCGGTGCTGGAAAGACTGAAGAA 1310
|||||||||||||| || ||||| |||||||||||||| |||||| ||||||||| |||
Sbjct 1232 CATATGGGAGAAGAAGTAGGGCCTAATCATGACCCTTTTGGTGCTACAAAGACTGATGAA 1291
Query 1311 GATGATGATTGA 1322
| ||||||||||
Sbjct 1292 GCTGATGATTGA 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58582796810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5