BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02725.1
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490284 jgi|Araly1|490284|fgenesh2_kg.6__3418__AT4G02725.1 902 0.0
> Ahg490284 jgi|Araly1|490284|fgenesh2_kg.6__3418__AT4G02725.1
Length=679
Score = 902 bits (488), Expect = 0.0
Identities = 630/694 (91%), Gaps = 27/694 (4%)
Strand=Plus/Plus
Query 1 CACATTTTAATTAGAGTCAATCGAGTCCTC--T--ATCCTTATCGTCGTCTTCAGATGGC 56
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 1 CACATTTTAATTAGAGTCAATTGAGTCCTCTATCCATCCTTATCGTCGTCTTCAGATGGC 60
Query 57 AAGTCTCTCCATGTCCGCCGTGTCTCTGTCGCCGTTTCGGCCTCAAACAGAGAATCTTCT 116
|||||||||||| |||||||||||||||||||||||||| || || ||| ||| || |||
Sbjct 61 AAGTCTCTCCATCTCCGCCGTGTCTCTGTCGCCGTTTCGACCACAGACACAGACTCGTCT 120
Query 117 TTCAAAACTCAGTTTCCGAACGAACT-TACACTCGTTCAATCTCAAACCAATAAGGATTA 175
| ||||||||||| ||||||||| | | ||||| |||||||||||||| ||||||||||
Sbjct 121 TACAAAACTCAGTCCCCGAACGAA-TCTCCACTCATTCAATCTCAAACCGATAAGGATTA 179
Query 176 GTACGAAAGTTAGAAGTTTTGGTGGGAATCGGAGAGAGCCGAAGGATTCAAGATT-TGTC 234
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 180 ACACGAAAATTAGAAGTTTGGGTGGGAATCGGAGAGAGCCGAAGGATTCGAGATTCAGT- 238
Query 235 GATGAAAAAGGCGTAGTTGATGACATGGAAGGTTTCTTAGACAATCTCTCTCTCGAATAC 294
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GATGAAAATGGCGTAGTTGATGACATGGAAGGTTTCTTAGACAATCTCTCTCTCGAATAC 298
Query 295 GACTCTGTTTGGGACACTAAACCCTCTTGGTGTCAGCCATGGACGATAATGTTAACGGGT 354
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GACTCCGTTTGGGACACTAAACCCTCTTGGTGTCAGCCATGGACGATAATGTTAACGGGT 358
Query 355 CTATCAATAGTGGCATGTAGCTGGGTAATACTACACTCGGTCATAGTTTCATCGCTTGCG 414
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 TTATCAATAGTGGCATGTAGCTGGGTAATACTACATTCGGTCATAGTTTCATCGCTTGCG 418
Query 415 GTTGGTGTAATTGGTGCTTGGTGGTACATATTCCTTTATAGCTACCCAAAGTCGTATTCA 474
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 GTTGGTGTAATTGGCGCTTGGTGGTACATTTTCCTTTATAGCTACCCAAAGTCGTATTCA 478
Query 475 GAAATGATTGCTGAAAGAAGGAAACGAGTAGCTGATGGTTTTGAAGATATTTACGGCAAA 534
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 GAAATGATTGCTGAGAGAAGGAAAAGAGTAGCTGATGGTTTTGAAGATATTTACGGCAAA 538
Query 535 AACAAGCCTTCATAGGATCTTCTCAATGTTCAAAATTACATTCGTTTCTTGCATAAATCT 594
|||||| |||||||||||||||||||| || |||||||||| ||| |||||||||||||
Sbjct 539 AACAAGACTTCATAGGATCTTCTCAATCCTCGAAATTACATTTGTTGCTTGCATAAATCT 598
Query 595 TCCCTTCTGTTGTGTGTATAATATAACCATCATCTATGGATTTAT---CTCAATTTCATT 651
| || || |||||| | | ||||||||||||||||| ||||||||||||
Sbjct 599 T-------GT-GT----ATAATA-A-CAATCATCTATGGATTTATGATCTCAATTTCATT 644
Query 652 CACAGATGTTTGGATACATAAA-TCTTGATTTCA 684
||||||||| |||||||| || |||||||||||
Sbjct 645 CACAGATGTGTGGATACA-AAGCTCTTGATTTCA 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25542354390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5