BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02730.1 Length=1257 Score E Sequences producing significant alignments: (Bits) Value Ahg943448 jgi|Araly1|943448|scaffold_603992.1 1533 0.0 Ahg943443 jgi|Araly1|943443|scaffold_603987.1 460 8e-129 > Ahg943448 jgi|Araly1|943448|scaffold_603992.1 Length=1025 Score = 1533 bits (830), Expect = 0.0 Identities = 911/951 (96%), Gaps = 2/951 (0%) Strand=Plus/Plus Query 87 CCGGTAACGCAGGAACAAGCGGAAACGTTCCGATATATAAGCCATACCGTCACCTGAAAA 146 |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 55 CCGGTAACGCGGGAACAAGCGGAAACATTCCGATGTATAAGCCATACCGTCACCTGAAAA 114 Query 147 CCCTAGAAGGTCACACGGCGGCGATCTCTTGCGTCAAATTCTCCAACGACGGCAATCTTC 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 CCCTAGAAGGTCACACGGCGGCGATCTCTTGCGTCAAATTCTCCAACGACGGCAATCTTC 174 Query 207 TCGCTTCCGCTTCCGTAGACAAAACCATGATCCTCTGGTCAGCAACAAACTACTCTCTCA 266 | |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| | Sbjct 175 TGGCTTCCGCTTCCGTCGACAAAACCATGATTCTCTGGTCAGCTACGAACTACTCTCTTA 234 Query 267 TTCATCGTTACGAAGGTCACTCTAGTGGTATCTCCGATCTAGCTTGGTCTTCTGATTCGC 326 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 235 TTCATCGTTACGAAGGTCACTCTATTGGTATCTCCGATCTAGCTTGGTCTTCTGATTCGC 294 Query 327 ATTACACTTGCTCTGCTTCTGATGATTGTACGCTTCGAATCTGGGACGCTAGATCTCCTT 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 ATTACACTTGCTCTGCTTCTGATGATTGTACGCTTCGAATCTGGGACGCTAGATCTCCTT 354 Query 387 ATGAATGTCTTAAGGTTCTTAGAGGTCATACGAATTTCGTCTTCTGTGTTAATTTCAATC 446 | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 355 ACGAGTGTCTTAAGGTTCTTAGAGGTCATACGAATTTCGTGTTCTGTGTTAATTTCAATC 414 Query 447 CTCCTTCGAATTTGATTGTGTCTGGATCGTTCGATGAGACGATTCGTATTTGGGAGGTTA 506 |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 415 CTCCGTCGAATTTGATTGTGTCTGGATCGTTTGATGAGACGATTCGGATTTGGGAGGTTA 474 Query 507 AGACTGGGAAGTGTGTTAGGATGATTAAAGCTCATTCGATGCCGATTTCGAGTGTGCATT 566 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 AGACTGGGAAATGTGTTAGGATGATTAAAGCTCATTCGATGCCGATTTCGAGTGTGCATT 534 Query 567 TTAATAGAGATGGATCGTTGATTGTTTCGGCAAGTCATGATGGTTCTTGTAAGATTTGGG 626 ||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 535 TTAATCGAGATGGATCGTTGATTGTTTCGGGAAGTCATGATGGTTCTTGTAAAATTTGGG 594 Query 627 ATGCTAAAGAAGGAACTTGCTTGAAGACTCTTATTGATGATAAATCTCCGGCTGTTTCTT 686 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 ATGCTAAGGAAGGAACTTGCTTGAAGACTCTTATTGATGATAAATCTCCGGCTGTTTCTT 654 Query 687 TCGCTAAGTTCTCGCCCAATGGCAAGTTTATACTCGTTGCTACTCTCGATAGTACTCTCA 746 |||| || |||||||| || || |||||||||||||||||||| |||||||||||||||| Sbjct 655 TCGCCAAATTCTCGCCTAACGGGAAGTTTATACTCGTTGCTACGCTCGATAGTACTCTCA 714 Query 747 AGCTGTCGAACTATGCGACGGGGAAGTTTTTGAAAGTGTATACAGGACATACTAACAAAG 806 ||||||| |||||||| |||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 715 AGCTGTCCAACTATGCAACGGGGAAGTTTCTGAAAGTGTACACAGGACATACCAACAAAG 774 Query 807 TGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCAG 866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 TGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCAG 834 Query 867 AGGATAATTGTGTGTATCTGTGGGATCTTCAAGC-GAGAAATATACTGCAGAGACTAGAA 925 |||| ||||||||||||||||||||||||||| | || |||||||||||||||| | ||| Sbjct 835 AGGACAATTGTGTGTATCTGTGGGATCTTCAA-CAGAAAAATATACTGCAGAGATTGGAA 893 Query 926 GGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATATCTTCA 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 894 GGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATAGCTTCA 953 Query 986 TCGGGTAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1036 ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 TCGGGAAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1004 > Ahg943443 jgi|Araly1|943443|scaffold_603987.1 Length=402 Score = 460 bits (249), Expect = 8e-129 Identities = 278/292 (95%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 746 AAGCTGTCGAACTATGCGACGGGGAAGTTTTTGAAAGTGTATACAGGACATACTAACAAA 805 ||||||||||||||||| |||||||||||| |||||||||| ||||||||||| |||||| Sbjct 90 AAGCTGTCGAACTATGCCACGGGGAAGTTTCTGAAAGTGTACACAGGACATACCAACAAA 149 Query 806 GTGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCA 865 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 150 GTGTTCTGTATCACATCAGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCA 209 Query 866 GAGGATAATTGTGTGTATCTGTGGGATCTTCAAGC-GAGAAATATACTGCAGAGACTAGA 924 ||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||| | || Sbjct 210 GAGGACAATTGTGTGGATCTGTGGGATCTTCAA-CAGAGAAATATACTGCAGAGATTGGA 268 Query 925 AGGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATATCTTC 984 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 269 AGGCCACATAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATAGCTTC 328 Query 985 ATCGGGTAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1036 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 ATCGGGAAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 380 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46967433744 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5