BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02730.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943448 jgi|Araly1|943448|scaffold_603992.1 1533 0.0
Ahg943443 jgi|Araly1|943443|scaffold_603987.1 460 8e-129
> Ahg943448 jgi|Araly1|943448|scaffold_603992.1
Length=1025
Score = 1533 bits (830), Expect = 0.0
Identities = 911/951 (96%), Gaps = 2/951 (0%)
Strand=Plus/Plus
Query 87 CCGGTAACGCAGGAACAAGCGGAAACGTTCCGATATATAAGCCATACCGTCACCTGAAAA 146
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 55 CCGGTAACGCGGGAACAAGCGGAAACATTCCGATGTATAAGCCATACCGTCACCTGAAAA 114
Query 147 CCCTAGAAGGTCACACGGCGGCGATCTCTTGCGTCAAATTCTCCAACGACGGCAATCTTC 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CCCTAGAAGGTCACACGGCGGCGATCTCTTGCGTCAAATTCTCCAACGACGGCAATCTTC 174
Query 207 TCGCTTCCGCTTCCGTAGACAAAACCATGATCCTCTGGTCAGCAACAAACTACTCTCTCA 266
| |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| |
Sbjct 175 TGGCTTCCGCTTCCGTCGACAAAACCATGATTCTCTGGTCAGCTACGAACTACTCTCTTA 234
Query 267 TTCATCGTTACGAAGGTCACTCTAGTGGTATCTCCGATCTAGCTTGGTCTTCTGATTCGC 326
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 235 TTCATCGTTACGAAGGTCACTCTATTGGTATCTCCGATCTAGCTTGGTCTTCTGATTCGC 294
Query 327 ATTACACTTGCTCTGCTTCTGATGATTGTACGCTTCGAATCTGGGACGCTAGATCTCCTT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATTACACTTGCTCTGCTTCTGATGATTGTACGCTTCGAATCTGGGACGCTAGATCTCCTT 354
Query 387 ATGAATGTCTTAAGGTTCTTAGAGGTCATACGAATTTCGTCTTCTGTGTTAATTTCAATC 446
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 355 ACGAGTGTCTTAAGGTTCTTAGAGGTCATACGAATTTCGTGTTCTGTGTTAATTTCAATC 414
Query 447 CTCCTTCGAATTTGATTGTGTCTGGATCGTTCGATGAGACGATTCGTATTTGGGAGGTTA 506
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 415 CTCCGTCGAATTTGATTGTGTCTGGATCGTTTGATGAGACGATTCGGATTTGGGAGGTTA 474
Query 507 AGACTGGGAAGTGTGTTAGGATGATTAAAGCTCATTCGATGCCGATTTCGAGTGTGCATT 566
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGACTGGGAAATGTGTTAGGATGATTAAAGCTCATTCGATGCCGATTTCGAGTGTGCATT 534
Query 567 TTAATAGAGATGGATCGTTGATTGTTTCGGCAAGTCATGATGGTTCTTGTAAGATTTGGG 626
||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 535 TTAATCGAGATGGATCGTTGATTGTTTCGGGAAGTCATGATGGTTCTTGTAAAATTTGGG 594
Query 627 ATGCTAAAGAAGGAACTTGCTTGAAGACTCTTATTGATGATAAATCTCCGGCTGTTTCTT 686
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATGCTAAGGAAGGAACTTGCTTGAAGACTCTTATTGATGATAAATCTCCGGCTGTTTCTT 654
Query 687 TCGCTAAGTTCTCGCCCAATGGCAAGTTTATACTCGTTGCTACTCTCGATAGTACTCTCA 746
|||| || |||||||| || || |||||||||||||||||||| ||||||||||||||||
Sbjct 655 TCGCCAAATTCTCGCCTAACGGGAAGTTTATACTCGTTGCTACGCTCGATAGTACTCTCA 714
Query 747 AGCTGTCGAACTATGCGACGGGGAAGTTTTTGAAAGTGTATACAGGACATACTAACAAAG 806
||||||| |||||||| |||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 715 AGCTGTCCAACTATGCAACGGGGAAGTTTCTGAAAGTGTACACAGGACATACCAACAAAG 774
Query 807 TGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCAG 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCAG 834
Query 867 AGGATAATTGTGTGTATCTGTGGGATCTTCAAGC-GAGAAATATACTGCAGAGACTAGAA 925
|||| ||||||||||||||||||||||||||| | || |||||||||||||||| | |||
Sbjct 835 AGGACAATTGTGTGTATCTGTGGGATCTTCAA-CAGAAAAATATACTGCAGAGATTGGAA 893
Query 926 GGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATATCTTCA 985
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 GGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATAGCTTCA 953
Query 986 TCGGGTAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1036
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TCGGGAAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1004
> Ahg943443 jgi|Araly1|943443|scaffold_603987.1
Length=402
Score = 460 bits (249), Expect = 8e-129
Identities = 278/292 (95%), Gaps = 2/292 (1%)
Strand=Plus/Plus
Query 746 AAGCTGTCGAACTATGCGACGGGGAAGTTTTTGAAAGTGTATACAGGACATACTAACAAA 805
||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 90 AAGCTGTCGAACTATGCCACGGGGAAGTTTCTGAAAGTGTACACAGGACATACCAACAAA 149
Query 806 GTGTTCTGTATCACATCGGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCA 865
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 GTGTTCTGTATCACATCAGCGTTTTCTGTAACGAATGGGAAGTACATTGTGAGTGGATCA 209
Query 866 GAGGATAATTGTGTGTATCTGTGGGATCTTCAAGC-GAGAAATATACTGCAGAGACTAGA 924
||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||| | ||
Sbjct 210 GAGGACAATTGTGTGGATCTGTGGGATCTTCAA-CAGAGAAATATACTGCAGAGATTGGA 268
Query 925 AGGCCACACAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATATCTTC 984
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 269 AGGCCACATAGACGCAGTGATCTCAGTGAGTTGCCATCCGGTTCAGAACGAGATAGCTTC 328
Query 985 ATCGGGTAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 1036
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATCGGGAAATCATTTGGATAAAACTATCAGGATTTGGAAACAGGATGCTTGA 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5