BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02733.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943446 jgi|Araly1|943446|scaffold_603990.1 599 1e-170
> Ahg943446 jgi|Araly1|943446|scaffold_603990.1
Length=826
Score = 599 bits (324), Expect = 1e-170
Identities = 454/515 (88%), Gaps = 15/515 (3%)
Strand=Plus/Plus
Query 88 TGGATTCAATAATCTCCTCCTTGGTTACATTTCCGGATTCTCCATCTCTCTCCATAAGCT 147
||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || |
Sbjct 22 TGGATTCGATAATCTCCTCCTTGCTTACGTTTCCGGATTCTCCATCTCTGTCCATCAGAT 81
Query 148 CCTCTTTCGATCGAGTACTTGATCATCTTCTCTCCTCTGGTGATGTCTCCGTCCAAGACC 207
|||| |||||||||||||||||| |||||||||||||| |||||| |||||| ||||| |
Sbjct 82 CCTCATTCGATCGAGTACTTGATAATCTTCTCTCCTCTAGTGATGACTCCGTTCAAGATC 141
Query 208 AACTCGTAGATCGTACTCTCGAGCGCTTCTCGCTTCTTCTCCAATCCACCAAACGTTGCT 267
||||| | |||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 142 AACTCATCGATCGTACTCTCGAACGCTTCTCGCTTCTTCTCGAATCCACCAAACGTCGCT 201
Query 268 CCCAGAAACGAGCCACACTTCACAATTCCATCTCCTGGTTCCTCCCTTCGGAACTCACCG 327
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 202 TCCAGAAACGAGCCACACTCCACAATTCCATCTCCTGGTTCCTCCCTTCCGACCTCACCA 261
Query 328 TTAAGGTATTTTCGATGGTTGATACAAAATCCCTAATGCAAGCTTCTGCATGCTGCACAA 387
| ||| ||||||||| | |||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 262 TCAAGATATTTTCGAAGCTTGATACAAAGTCCCTGATGCAAGTTTCTGCATGCTGCACAA 321
Query 388 TGTTCAATAATTGTGCCATGGACCCTTTATGTTACTTTCATATTGATTTGACAAAAGCAT 447
|| |||| || |||||||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 322 TGCTCAACAAGAGTGCCATGGACCCTTTATGTTACTCTCATATTGACTTGACAACAGCAT 381
Query 448 TTAAACATGTTGATGACCGCGTTTTGCGTACTTTGCTTAATCGTTCTGGAAAACAACTCA 507
|| |||||| ||||||||| |||||| |||||||| | ||||||||||||||||||||||
Sbjct 382 TTCAACATGCTGATGACCGAGTTTTGAGTACTTTGATCAATCGTTCTGGAAAACAACTCA 441
Query 508 GATCCCTTAAACTTGGTCGT-GTTGATGCTCCCGGAT--GTT---T----GTTTAGAAGT 557
|||||||||||||||||||| || ||||||||||||| ||| | ||||| ||
Sbjct 442 GATCCCTTAAACTTGGTCGTCGT-GATGCTCCCGGATACGTTCCATCTTTGTTTACAAAC 500
Query 558 TCTTGTCTTCCTCCACTA-ATACTTTA-TGGGAAT 590
||||||||| |||||||| | | |||| |||||||
Sbjct 501 TCTTGTCTTGCTCCACTACA-A-TTTACTGGGAAT 533
Score = 372 bits (201), Expect = 3e-102
Identities = 284/323 (88%), Gaps = 10/323 (3%)
Strand=Plus/Plus
Query 600 AGAGCCCTTAAACTT-G--GTCGTGATCCTCCTGG-T-C-TTGGATCTTTGTTTACAAGA 653
||| ||||||||||| | |||||||| |||| || | | || |||||||||||||| |
Sbjct 441 AGATCCCTTAAACTTGGTCGTCGTGATGCTCCCGGATACGTTCCATCTTTGTTTACAA-A 499
Query 654 -TCTTGTTTTGATCCACTAAAACTTACCGGGAATCTTTTGACAAGTCTACACATTTACTC 712
|||||| ||| ||||||| || |||| ||||||||||||| ||| |||||||| |||||
Sbjct 500 CTCTTGTCTTGCTCCACTACAATTTACTGGGAATCTTTTGAGAAGCCTACACATCTACTC 559
Query 713 TCTTGGATTCATGAACA-TGAATTCCTTTTTGGATCCATTGTCAGCCTGCTCGAATCTAA 771
| | ||||||||| ||| || ||||||| |||| |||||| ||||||||| | |||||||
Sbjct 560 TATCGGATTCATGTACATTG-ATTCCTTATTGGCTCCATTATCAGCCTGCGCCAATCTAA 618
Query 772 CCGATTTGAAGATTGTTGGAGTGAATGTTTTGTTAGAGCCGATATTAGAGTTACTTGCGA 831
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 619 CCGATTTGAAGATTGTTGGAGTGAATGTTTTTTTAGAGCCGATAATAGAGTTACTTGCGA 678
Query 832 GAAACTGTTGCTTGATAGAGCATCTGTTCTTAGATAACTGTTCTCAAGGTAAAACTTTTA 891
||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 679 TAAAATGTTGCTTGATAGAGCATCTATTCTTAGATAACTTTTCTCAAGGTAAAAATTTTA 738
Query 892 CATGGTGGGGCTTCCTTTATTTT 914
||||||||||||||||||||||
Sbjct 739 TATGGTGGGGCTTCCTTTATTTT 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5