BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02733.1 Length=959 Score E Sequences producing significant alignments: (Bits) Value Ahg943446 jgi|Araly1|943446|scaffold_603990.1 599 1e-170 > Ahg943446 jgi|Araly1|943446|scaffold_603990.1 Length=826 Score = 599 bits (324), Expect = 1e-170 Identities = 454/515 (88%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 88 TGGATTCAATAATCTCCTCCTTGGTTACATTTCCGGATTCTCCATCTCTCTCCATAAGCT 147 ||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||| || | Sbjct 22 TGGATTCGATAATCTCCTCCTTGCTTACGTTTCCGGATTCTCCATCTCTGTCCATCAGAT 81 Query 148 CCTCTTTCGATCGAGTACTTGATCATCTTCTCTCCTCTGGTGATGTCTCCGTCCAAGACC 207 |||| |||||||||||||||||| |||||||||||||| |||||| |||||| ||||| | Sbjct 82 CCTCATTCGATCGAGTACTTGATAATCTTCTCTCCTCTAGTGATGACTCCGTTCAAGATC 141 Query 208 AACTCGTAGATCGTACTCTCGAGCGCTTCTCGCTTCTTCTCCAATCCACCAAACGTTGCT 267 ||||| | |||||||||||||| |||||||||||||||||| |||||||||||||| ||| Sbjct 142 AACTCATCGATCGTACTCTCGAACGCTTCTCGCTTCTTCTCGAATCCACCAAACGTCGCT 201 Query 268 CCCAGAAACGAGCCACACTTCACAATTCCATCTCCTGGTTCCTCCCTTCGGAACTCACCG 327 |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 202 TCCAGAAACGAGCCACACTCCACAATTCCATCTCCTGGTTCCTCCCTTCCGACCTCACCA 261 Query 328 TTAAGGTATTTTCGATGGTTGATACAAAATCCCTAATGCAAGCTTCTGCATGCTGCACAA 387 | ||| ||||||||| | |||||||||| ||||| ||||||| ||||||||||||||||| Sbjct 262 TCAAGATATTTTCGAAGCTTGATACAAAGTCCCTGATGCAAGTTTCTGCATGCTGCACAA 321 Query 388 TGTTCAATAATTGTGCCATGGACCCTTTATGTTACTTTCATATTGATTTGACAAAAGCAT 447 || |||| || |||||||||||||||||||||||| ||||||||| ||||||| ||||| Sbjct 322 TGCTCAACAAGAGTGCCATGGACCCTTTATGTTACTCTCATATTGACTTGACAACAGCAT 381 Query 448 TTAAACATGTTGATGACCGCGTTTTGCGTACTTTGCTTAATCGTTCTGGAAAACAACTCA 507 || |||||| ||||||||| |||||| |||||||| | |||||||||||||||||||||| Sbjct 382 TTCAACATGCTGATGACCGAGTTTTGAGTACTTTGATCAATCGTTCTGGAAAACAACTCA 441 Query 508 GATCCCTTAAACTTGGTCGT-GTTGATGCTCCCGGAT--GTT---T----GTTTAGAAGT 557 |||||||||||||||||||| || ||||||||||||| ||| | ||||| || Sbjct 442 GATCCCTTAAACTTGGTCGTCGT-GATGCTCCCGGATACGTTCCATCTTTGTTTACAAAC 500 Query 558 TCTTGTCTTCCTCCACTA-ATACTTTA-TGGGAAT 590 ||||||||| |||||||| | | |||| ||||||| Sbjct 501 TCTTGTCTTGCTCCACTACA-A-TTTACTGGGAAT 533 Score = 372 bits (201), Expect = 3e-102 Identities = 284/323 (88%), Gaps = 10/323 (3%) Strand=Plus/Plus Query 600 AGAGCCCTTAAACTT-G--GTCGTGATCCTCCTGG-T-C-TTGGATCTTTGTTTACAAGA 653 ||| ||||||||||| | |||||||| |||| || | | || |||||||||||||| | Sbjct 441 AGATCCCTTAAACTTGGTCGTCGTGATGCTCCCGGATACGTTCCATCTTTGTTTACAA-A 499 Query 654 -TCTTGTTTTGATCCACTAAAACTTACCGGGAATCTTTTGACAAGTCTACACATTTACTC 712 |||||| ||| ||||||| || |||| ||||||||||||| ||| |||||||| ||||| Sbjct 500 CTCTTGTCTTGCTCCACTACAATTTACTGGGAATCTTTTGAGAAGCCTACACATCTACTC 559 Query 713 TCTTGGATTCATGAACA-TGAATTCCTTTTTGGATCCATTGTCAGCCTGCTCGAATCTAA 771 | | ||||||||| ||| || ||||||| |||| |||||| ||||||||| | ||||||| Sbjct 560 TATCGGATTCATGTACATTG-ATTCCTTATTGGCTCCATTATCAGCCTGCGCCAATCTAA 618 Query 772 CCGATTTGAAGATTGTTGGAGTGAATGTTTTGTTAGAGCCGATATTAGAGTTACTTGCGA 831 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 619 CCGATTTGAAGATTGTTGGAGTGAATGTTTTTTTAGAGCCGATAATAGAGTTACTTGCGA 678 Query 832 GAAACTGTTGCTTGATAGAGCATCTGTTCTTAGATAACTGTTCTCAAGGTAAAACTTTTA 891 ||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| Sbjct 679 TAAAATGTTGCTTGATAGAGCATCTATTCTTAGATAACTTTTCTCAAGGTAAAAATTTTA 738 Query 892 CATGGTGGGGCTTCCTTTATTTT 914 |||||||||||||||||||||| Sbjct 739 TATGGTGGGGCTTCCTTTATTTT 761 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35606804478 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5