BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02760.3
Length=2243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352549 jgi|Araly1|352549|fgenesh1_pg.C_scaffold_6003142 1718 0.0
Ahg490282 jgi|Araly1|490282|fgenesh2_kg.6__3416__AT4G02740.1 353 3e-96
> Ahg352549 jgi|Araly1|352549|fgenesh1_pg.C_scaffold_6003142
Length=1359
Score = 1718 bits (930), Expect = 0.0
Identities = 1059/1122 (94%), Gaps = 6/1122 (1%)
Strand=Plus/Plus
Query 214 ATGGACGCTCCCAATCCCAAGCGACCTTGTCTTGTGCCTTTGGGTACCTCCTCCATAGAA 273
||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||
Sbjct 1 ATGGACGCTCCCAATCCCAAGCGACCTTGCCTTGTCCCTTTGGTTACCTACTCCATAGAA 60
Query 274 AACCCTTGCTCCCTCCCTATTGCTCCAGATTTCAACCAAAGCAACATCGATTTGACTATC 333
||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 AACCCTTTTTCCCTCCCTATTGCTCCAGATTTCAACCAAAGCAACATTGATATGACTATC 120
Query 334 TCTTCTTTCCTTTCGTTGTCGGACTTGCCTTTGTTCTCCTTACCGCTCTCCATTGGATGC 393
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 121 TCTTCTTTCCTTTCATTGTCCGACTTGCCTTTGTTCTCCTCACCGCTCTCCATAGGATGC 180
Query 394 TCTTTTGATCGAGTGCTTGATAATGTCATCCCCTCAATAGCTGGAACTTCCCGTGATGAA 453
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 181 TCTTTTGATCGAGTGCTTGATAAAGTTATCCCCTCAGCAGCTGGAACTTCCCGTGATGAA 240
Query 454 TTTGATCAGGATCGTTTCTTGGATCGTACTCTCCAACTCGCATCGCTTCTATACAAGTCC 513
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTTGATCAGGATCGTTTCCTAGATCGTACTCTCCAACTCGCATCGCTTCTTTACAAGTCC 300
Query 514 ACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCACATCCTGGCCTCTCCTC 573
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 ACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCTCATCCTGGCCTCTCCTC 360
Query 574 CCTGAACTAACTATTAAGGTCTTTTCAATGCTTGATACGAAGTCTCTCATGCAAGCTTCT 633
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTGAACTAACCACTAAGGTCTTTTCAATGCTTGATACGAAGTCTCTCATGCAAGCTTCT 420
Query 634 GCGTGTTGCACAATGTTCAACAAGTGTGCCATGGATCGTGTATGTTACTCCCACATCGAC 693
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCATGTTGCACGATGTTCAACAAGTGTGCCATGGATCGTGTATGTTACTCCCACATCGAC 480
Query 694 CTGACAACGGCTGCCGAAGATGTTGATAATGGAGTTGTGTGCGTAATGATCCATCGGGCT 753
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGACAACGGCTGCCGAAGTTGTTGATAATGGAGTTGTGTGCGTAATGATCCATCGGGCT 540
Query 754 GGAAAAGAACTCAGATCCCTCAAACTTGGTTCTATTTCTTCCTCAGCTGAACCTACTACA 813
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 541 GGAAAAGAACTCAGATCCCTTAAACTTGGTTCTATTTCTTCCTCAGCTGGATTTACTACA 600
Query 814 TCTTTGCTGACAAGATCCTGTCTTACTCCACTAACTTTTAACCATGGTTTTACTGGGGGT 873
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 601 TCTTTGCTGACAAGATCCTGTCTTACCCCACTAACTTTTAACCATGGTTTTGCTGGGGGT 660
Query 874 CATTTGAGAAGCCTACACCTTTACCATCTCAGAATGATAGATTGCGGGTCCTTATCTCCT 933
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 661 CATTTGAGAAGCCTACACCTTTACCATCTCAGAATGATGGATTGCGAGTCCTTATCTCCT 720
Query 934 GTGTTGTCAGCTTGTTTAAATCTCACTGATTTGAAGATTGTTGGACTTATTTCA-GGAAG 992
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 721 GTGTTGTCAGCTTGTTTAAATCTCACTGATTTGAAGATTGTTGGACTTATT-CAAGGAAG 779
Query 993 CAGGGATAATCCACTTGAGCAGTTAGGTTTACTCACGAGAAATTGTCGCTTGATAGAGCA 1052
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 CAGGTACAATCCACTTGAGCAGTTAGGTTTACTCACGAGAAATTGTCGCTTGTTAGAGCA 839
Query 1053 CCTGTTCATAGAGATATATGGTGCAGCAGGCCTTATAACAGATTCAAGCTTGTTAGAGTT 1112
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 CCTGTTCATAGAGATATATGGTGCAGCAGGCCCTATAACAGATTCAAGCTTGTTAGAGTT 899
Query 1113 TGCGGCCAATTGCCCCAACTTAAGTTCGATATCGCTCCTAGGTTTTCTGCTAAATGACGC 1172
|| || || ||||||||||||| |||| ||||||||||| ||||| ||||||| | |||
Sbjct 900 TGTGGATAAATGCCCCAACTTAATTTCGCTATCGCTCCTATGTTTTATGCTAAAGGGCGC 959
Query 1173 AATATTACAAAAATTAATTAAGGGTTTTCGTCGACTGAAGCACATTAATCTGTCGA-GTT 1231
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 960 AATATTACAAAAATTAATTAAGGGTTTTCGTCAACTGAAGTACATTAATCTGTCGAAGT- 1018
Query 1232 CGCCTGAAATTAGTGGTTGCTTTTTCAGGGGTTTGGAACTTTGCGGCAAAGATAGTCCAT 1291
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1019 CGCCTGAAATTAGTGGTTGCTTTTTCAGGGGTTTGGGACTTTGCTGCAAAGATAGTCCAC 1078
Query 1292 TGGAGACTCTGATATTGCGTGACTGCTATA-TCCTAAAGGAG 1332
|||||||| |||||||||| | ||||||| || || |||||
Sbjct 1079 TGGAGACTTTGATATTGCGCAATTGCTATACTC-TAGAGGAG 1119
Score = 355 bits (192), Expect = 7e-97
Identities = 220/234 (94%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1396 GACGTATCAAACGTCGACGGTTTAGTATGTGATGGAGGCAATAGAACTTTTGAACCAAGA 1455
||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1120 GACGTATCAAACGTCAACGGTTTAGTTTGTGATGGAGGCAATAGAACGTTTGAACCAAGA 1179
Query 1456 TTTCCTATCGAGGAGCTGAAAAAGCAAAGATCAAATGTCACATTTGTGGCAATCTTTGAA 1515
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||
Sbjct 1180 TTTCCTATCGAGGAGCTGAAAAAACAAAGATCAGATGTCACATTGGTGGCAATTTTTGAA 1239
Query 1516 TCACAGTCATCATTGTCATCATCAAGCTCAGGGGAGGTATATTCAGATGGCACCTCTTCG 1575
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TCACAATCATCATTGTCATCATCAAGCTCAGGGGAGGTATATTCAGATGGCACCTCTTCT 1299
Query 1576 TGGACTTCTAATTATAACAGCGCGGAGGAGGAGCATGACAACGACTTGGACTCT 1629
|||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||
Sbjct 1300 TGGAGTTCTAATTATAGCAGTGAGGAGGAGGAGCATAACAACGACTTGGACTCT 1353
> Ahg490282 jgi|Araly1|490282|fgenesh2_kg.6__3416__AT4G02740.1
Length=1582
Score = 353 bits (191), Expect = 3e-96
Identities = 444/561 (79%), Gaps = 38/561 (7%)
Strand=Plus/Plus
Query 440 CTTCCCG-TGATGAATTTGATCAGGATCGTTTCTTGGATCGTACTCTCCAACTCGCATCG 498
||| ||| |||||||| | |||||||||| || | |||||||||||| |||||||||||
Sbjct 173 CTT-CCGCTGATGAATCCGTTCAGGATCGTCTCGTCGATCGTACTCTCGAACTCGCATCG 231
Query 499 CTTC-TATACAAGTCCACCAAACGTTGCATAAGGAAACGTGCCACCCTCCAAAATTCCAC 557
|||| | | | | ||||| ||||| ||| | ||||||| || | | || |||||||
Sbjct 232 CTTCTTCT-CGATTCCACGAAACGATGCTTCCGGAAACGAGCTTCTGTTCACAATTCCA- 289
Query 558 A-TCCTGG--CCTCTCCTCCCTGAACTAACTATTAAGGTCTTTTCAATGCTTGATACGAA 614
| |||||| ||| |||| || ||||| || |||||||| ||||| ||||||||||| ||
Sbjct 290 ATTCCTGGTTCCT-TCCT-CCAGAACTTACCATTAAGGTATTTTCGATGCTTGATACAAA 347
Query 615 GTCTCTCATGCAAGCTTCTGCGTGTTGCACAATGTTCAACAAGTGTGCCATGGATCGTGT 674
|||||| |||||||| ||| ||| ||||| ||||||||||| ||||| ||||| ||| |
Sbjct 348 GTCTCTGATGCAAGCAGCTGTGTGCTGCACCATGTTCAACAAATGTGCTATGGACCGTTT 407
Query 675 ATGTTACTCCCACATCGACCTGACAACGGCTGCCGA-AGATGTTGATAATGGAGTTGTGT 733
||||||||||||||||||| ||||||| ||| | | | ||| |||||| ||||||||||
Sbjct 408 ATGTTACTCCCACATCGACTTGACAACCTCTG-CTAGATATGCTGATAAAGGAGTTGTGT 466
Query 734 GCGTA--ATGATCCATCGGGCTGGAAAAGAACTCAGATCCCTCAAACTTGGTTC-TATTT 790
| || |||||| |||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 467 -C-TACTATGATCAATCGGGCTGGAAAAGAACTCAGATCCCTCAAACTTGGT-CGTGTTG 523
Query 791 CTTCCT-CAGCTGAACCT-A--CTAC---ATCTTTGCTGA-CAAGATCCTGTCTTACTCC 842
||| | |||||| | || | |||| | ||||||| | | |||| |||||| | ||
Sbjct 524 -TTCGTACAGCTGGATCTGATTCTACTGCACCTTTGCTTAGCG-GATCTTGTCTTTCCCC 581
Query 843 ACTAACTTTTAACCATGGTTTTACTGGGG-GTCATTTGAGAAGCCTACACCTTTACCATC 901
|||| | | ||| ||||| ||| || ||| ||| ||||||||||| | |||||| |||
Sbjct 582 ACTAGCATATAATCATGGCTTT-CTTGGGAGTCGCTTGAGAAGCCTGCGGCTTTACAATC 640
Query 902 TCAGA---ATGATAGATTGCGGGTCCTTAT-CTCCTGTGTTGTCAGCTTGTTTAAATCTC 957
||||| |||| | || | ||||||||| | || |||||||| |||| |||| ||
Sbjct 641 TCAGACCTATGA-A-ATA-CAGGTCCTTATGCGA-TGCGTTGTCAGTTTGTCCAAATATC 696
Query 958 ACTGATTTGAAGATTGTTGGA 978
|||||||||| ||||||||||
Sbjct 697 ACTGATTTGAGGATTGTTGGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84446073165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5