BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02770.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490280 jgi|Araly1|490280|fgenesh2_kg.6__3414__AT4G02770.1 1131 0.0
Ahg918978 jgi|Araly1|918978|scaffold_100259.1 678 0.0
> Ahg490280 jgi|Araly1|490280|fgenesh2_kg.6__3414__AT4G02770.1
Length=765
Score = 1131 bits (612), Expect = 0.0
Identities = 675/704 (96%), Gaps = 9/704 (1%)
Strand=Plus/Plus
Query 1 ATCTCTTTTCTCTTCTCATCAAAACATACCAAT-AAGCAATTTGCTCATTAGAGAACAGA 59
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1 ATCTCTTTTCTCTTCTCATCAAAACATACC-ATCAAGCAATTTGCTCATTAGAGAACAAA 59
Query 60 Gaaa-aaaaaaaCAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 118
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAAGAAAAAAACAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGCCATAACAACCG 119
Query 119 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCCAAATCCC 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 CCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCGTCCGAAATCCC 179
Query 179 TCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGCCGCCGCTGCTG 238
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 180 TCTCCTTCACCAAAACCTCAATCCGCGCCGAGAAAACAGATTCCAAAGCCGC---TGC-- 234
Query 239 CAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 -AGCCCCCGCCGTGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCTAGACCCAAACA 293
Query 299 CACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGCGCAAGTGGAAG 358
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 CACCGTCTCCGATCTTCGCGGGAAGCACCGGTGGTCTTCTACGTAAAGCACAAGTGGAAG 353
Query 359 AGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGATGCCGACAGGAG 418
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 354 AGTTCTACGTTATTACATGGAACTCACCAAAAGAACAGATCTTTGAGATGCCGACAGGAG 413
Query 419 GAGCAGCGATCATGAGAGAAGGTCCGAATCTTCTGAAGCTAGCGAGGAAAGAGCAGTGTT 478
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 414 GTGCAGCGATCATGAGAGAAGGTCCGAATCTGCTGAAGCTAGCGAGGAAAGAACAGTGTT 473
Query 479 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATCACTTACCAGTTTTACAGAGTGT 538
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 474 TAGCTTTGGGGACAAGGCTTAGATCCAAGTACAAGATTACCTACCAGTTTTACAGAGTGT 533
Query 539 TTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTCCTAATGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTATCCAGAGAAGGCGA 593
Query 599 ATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 594 ATCCAGGAAGAGAAGGTGTTGGTCTGAACATGAGATCTATTGGGAAAAATGTTAGTCCCA 653
Query 659 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 702
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAGAT 697
> Ahg918978 jgi|Araly1|918978|scaffold_100259.1
Length=661
Score = 678 bits (367), Expect = 0.0
Identities = 562/655 (86%), Gaps = 17/655 (3%)
Strand=Plus/Plus
Query 50 AGAGAACAGAGaaa-a-aaaaaaCAATGGCAACTCAAGCCGCCGGGATCTTCAACTCCGC 107
|||||| || |||| | || |||| |||||||||||||||||||| ||||||| | ||||
Sbjct 1 AGAGAA-AG-GAAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGC 58
Query 108 CATAACAACCGCCGCAACCTCCGGCGTCAAGAAACTCCACTTTTTCTCAACAACCCACCG 167
|||||||| || | || |||| |||||||||||||||| | |||||||||| ||||||
Sbjct 59 CATAACAA---CCACTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCAACAAGCCACCG 115
Query 168 TCCCAAATCCCTCTCCTTCACCAAAACCGCAATCCGCGCCGAGAAAACAGATTCCTCCGC 227
|||||| || |||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 116 TCCCAAGTCTCTCTCCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCT---C 172
Query 228 CGCCGCTGCTGCAGCCCCCGCCACGAAAGAAGCTCCCGTGGGATTCACGCCACCGCAGCT 287
| | ||||| ||| || | | | |||||||||| || |||||||| || ||||||||
Sbjct 173 CTCTGCTGCCCCAG-CCGTG-AAAG-AAGAAGCTCCGGTTGGATTCACTCCCCCGCAGCT 229
Query 288 AGACCCAAACACACCGTCTCCGATCTTCGCTGGAAGCACCGGTGGTCTTCTACGTAAAGC 347
||||||||||||||| || || |||||||| |||||||| || ||||| || ||||||||
Sbjct 230 AGACCCAAACACACCATCACCAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGC 289
Query 348 GCAAGTGGAAGAGTTCTACGTTATCACGTGGAACTCACCGAAAGAACAGATCTTTGAGAT 407
||||| || || || ||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 290 ACAAGTAGAGGAATTTTACGTCATCACATGGAACTCACCGAAGGAACAAATCTTTGAGAT 349
Query 408 GCCGACAGGAGGAGCAGCGATCATGAGAGAAGGTCCGAATCT-TCTGAAGCTAGCGAGGA 466
||| ||||||||||| ||||| ||||||||||| |||||||| | |||| ||||||||||
Sbjct 350 GCCAACAGGAGGAGCTGCGATAATGAGAGAAGGACCGAATCTGT-TGAAACTAGCGAGGA 408
Query 467 AAGAGCAGTGTTTAGCTTTGGGGACAAGGCTT-AGATCCAAGTACAAGATCACTTACCAG 525
|||| ||||| || ||||| || || ||| || || || || ||||||||||||||||||
Sbjct 409 AAGAACAGTGCTTGGCTTTAGGTACGAGG-TTGAGGTCTAAATACAAGATCACTTACCAG 467
Query 526 TTTTACAGAGTGTTTCCTAACGGTGAGGTTCAATATCTTCATCCTAAAGATGGTGTTTAT 585
|||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||||
Sbjct 468 TTTTACAGAGTGTTCCCTAACGGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTAT 527
Query 586 CCAGAGAAGGCGAATCCAGGAAGAGAAGGTGTTGGTCTCAACATGAGATCTATTGGGAAA 645
|||||||| |||||||||||||||||||||||||| || ||||||||||| || || |||
Sbjct 528 CCAGAGAAAGCGAATCCAGGAAGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAA 587
Query 646 AATGTTAGTCCCATTGAAGTTAAGTTTACTGGCAAACAAAGTTATGATTTGTAAG 700
||||||||||||||||| ||||| || ||||| |||||| ||||||||||||||
Sbjct 588 AATGTTAGTCCCATTGAGGTTAAATTCACTGGAAAACAATCTTATGATTTGTAAG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5