BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02780.1
Length=2570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352546 jgi|Araly1|352546|fgenesh1_pg.C_scaffold_6003139 3197 0.0
> Ahg352546 jgi|Araly1|352546|fgenesh1_pg.C_scaffold_6003139
Length=2229
Score = 3197 bits (1731), Expect = 0.0
Identities = 1930/2027 (95%), Gaps = 10/2027 (0%)
Strand=Plus/Plus
Query 48 ATGTCTCTTCAGTATCATGTTCTAAACTCCATTCCAAGTACAACCTTTCTCAGTTCTACT 107
||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 1 ATGTCTCTTCAATATCATGCTCTAAACTCCATTCAAAGTACAAACTTTCTCAGTTCTACT 60
Query 108 AAAACAACAATATCTTCTTCTTTCCTTACCATCTCAGGATCTCCTCTCAATGTCGCTAGA 167
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAAACAACATTATCTTCTTCTTTCCTTACAATCTCAGGATCTCCTCTCAATGTCGCTAGA 120
Query 168 GACAAATCCAGAAGCGGTTCCATACATTGTTCAAAGCTTCGAACTCAAGAATACATTAAT 227
|||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| || |
Sbjct 121 GACAAACCCAGAAGCGGTTCTATATATTGTTCAAAGCTTCGAACTCAAGAATACACTACT 180
Query 228 TCTCAAGAGGTTCAACATGATTTGCCTCTAATACATGAGTGGCAACAGCTTCAAGGAGAA 287
||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 181 TCTCAGGAGGTTCAACATGATCTGCCTCTAATAC---AGTGGCAACAGCTTCAAAGAGAA 237
Query 288 GATGCTCCTCAGATTAGTGTTGGAAGTAATAGTAATGC-ATTCAAAGAAGCAGTGAAGAG 346
|||||||||||||||||| |||||||||||| |||||| | || ||||||||||||||||
Sbjct 238 GATGCTCCTCAGATTAGTATTGGAAGTAATAATAATGCGA-TCGAAGAAGCAGTGAAGAG 296
Query 347 TGTGAAAACGATCTTGAGAAACCTAACGGACGGGGAAATTACGATATCGGCTTACGATAC 406
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 297 TGTGAAATCGATCTTGAGAAACCTAACTGACGGGGAAATTACGATATCGGCTTATGATAC 356
Query 407 AGCTTGGGTTGCATTGATCGATGCCGGAGATAAAACTCCGGCGTTTCCCTCCGCCGTGAA 466
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 357 CGCTTGGGTTGCATTGATCGATGCCGGAGACAAAACTCCGGCGTTTCCCTCGGCCGTGAA 416
Query 467 ATGGATCGCCGAGAACCAACTTTCCGATGGTTCTTGGGGAGATGCGTATCTCTTCTCTTA 526
||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct 417 ATGGATCGCCGAGAACCAACTCTCCGATGGTTCTTGGGGTGACGCTTATCTCTTCTCTTA 476
Query 527 TCATGATCGTCTCATCAATACCCTTGCATGCGTCGTTGCTCTAAGATCATGGAATCTCTT 586
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 477 TCATGATCGTCTCATCAATACACTTGCATGCGTCGTTGCTCTAAGATCATGGAATCTTTT 536
Query 587 TCCTCATCAATGCAACAAAGGAATCACGTTTTTCCGGGAAAATATTGGGAAGCTAGAAGA 646
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 537 TCCTCATCAATGCCACAAAGGAATCACGTTTTTCCGGGAAAATATTGGAAAGCTAGAAGA 596
Query 647 CGAAAATGATGAGCATATGCCAATCGGATTCGAAGTAGCATTCCCATCGTTGCTTGAGAT 706
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 597 CGAAAACGATGAGCATATGCCCATCGGATTTGAAGTAGCATTCCCATCGTTGCTTGAGAT 656
Query 707 AGCTCGAGGAATAAACATTGATGTACCGTACGATTCTCCGGTCTTAAAAGATATATACGC 766
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 657 AGCTCGAGAAATAAACATTGATGTACCGTACGATTCTCCAGTCTTAAAAGATATATACGC 716
Query 767 CAAGAAAGAGCTAAAGCTTACAAGGATACCAAAAGAGATAATGCACAAGATACCAACAAC 826
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAAGAAAGAGCTAAAGCTAACAAGGATACCAAAAGAGATAATGCACAAGATACCAACAAC 776
Query 827 ATTGTTGCATAGTTTGGAGGGGATGCGTGATTTAGATTGGGAAAAGCTCTTGAAACTTCA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATTGTTGCATAGTTTGGAGGGGATGCGTGATTTAGATTGGGAAAAGCTCTTGAAACTTCA 836
Query 887 ATCTCAAGACGGATCTTTCCTCTTCTCTCCTTCCTCTACCGCTTTTGCATTCATGCAGAC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATCTCAAGACGGATCTTTCCTCTTCTCTCCTTCCTCTACCGCTTTTGCATTCATGCAGAC 896
Query 947 CCGAGACAGTAACTGCCTC-GAGTATTTGCGAAATGCCGTCAAACGTTTCAATGGAGGAG 1005
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 897 CCGAGACAGTAACTGCCTCCG-GTATTTGCGAAATGCCGTCAAACGTTTCAATGGAGGAG 955
Query 1006 TTCCCAATGTCTTTCCCGTGGATCTTTTCGAGCACATATGGATAGTGGATCGGTTACAAC 1065
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 956 TTCCCAATGTCTTTCCGGTGGATCTTTTCGAGCACATATGGATAGTGGATCGGCTACAAC 1015
Query 1066 GTTTAGGGATATCGAGATACTTTGAAGAAGAGATTAAAGAGTGTCTTGACTATGTCCACA 1125
| ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1016 GGTTAGGGATATCAAGATACTTCGAGGAAGAGATTAAAGAGTGTCTTGACTATGTTCACA 1075
Query 1126 GATATTGGACCGACAATGGCATATGTTGGGCTAGATGTTCCCATGTCCAAGACATCGATG 1185
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1076 GATATTGGACCGACAAAGGCATATGTTGGGCTAGATGTTCCCATGTTCAAGACATCGACG 1135
Query 1186 ATACAGCCATGGCATTTAGGCTCTTAAGACAACATGGATACCAAGTGTCCGCAGATGTAT 1245
||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1136 ATACAGCAATGGCATTTAGGCTCTTAAGACTTCATGGATACCAAGTTTCCGCAGATGTAT 1195
Query 1246 TCAAGAACTTTGAGAAAGAGGGAGAGTTTTTCTGCTTTGTGGGGCAATCAAACCAAGCAG 1305
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1196 TCAAGAACTTTGAGAAAGAGGGGGAGTTTTTCTGTTTTGTGGGGCAATCAAACCAAGCGG 1255
Query 1306 TAACCGGTATGTTCAACCTATACCGGGCATCACAATTGGCGTTTCCAAGGGAAGAGATAT 1365
| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 TGACTGGTATGTTCAATCTATACCGGGCATCACAATTGGCGTTTCCAAGGGAAGATATAT 1315
Query 1366 TGAAAAACGCCAAAGAGTTTTCTTATAATTATCTGCTAGAAAAACGGGAGAGAGAGGAGT 1425
||||||||||||||||||| ||| |||| ||||||| || |||||| |||||||| ||||
Sbjct 1316 TGAAAAACGCCAAAGAGTTCTCTAATAAGTATCTGCAAGGAAAACGAGAGAGAGACGAGT 1375
Query 1426 TGATTGATAAGTGGATTATAATGAAAGACTTACCTGGCGAGATTGGGTTTGCGTTAGAGA 1485
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1376 TGATTGATAAGTGGATTATAATGAAAGACTTACCTGGCGAGATTGGCTTTGCGTTAGAGA 1435
Query 1486 TTCCATGGTACGCAAGCTTGCCTCGAGTAGAGACGAGATTCTATATTGATCAATATGGTG 1545
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1436 TTCCATGGTACGCAAGCTTGCCTCGAGTTGAGACGAGATTCTATATTGATCAATATGGTG 1495
Query 1546 GAGAAAACGACGTTTGGATTGGCAAGACTCTTTATAGGATGCCATACGTGAACAATAATG 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GAGAAAACGACGTTTGGATTGGCAAGACTCTTTATAGGATGCCATACGTGAACAATAATG 1555
Query 1606 GATATCTGGAATTAGCAAAACAAGATTACAACAATTGCCAAGCTCAGCATCAGCTCGAAT 1665
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1556 GATATCTGGAATTAGCAAAACAAGATTACAACAATTGCCAAGCTCTGCATCAGCTCGAAT 1615
Query 1666 GGGACATATTCCAAAAGTGGTATGAAGAAAATAGGTTAAGTGAGTGGGGTGTGCGCAGAA 1725
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1616 GGGACACATTCCAAAAGTGGTATGAAGAAAATAGGTTAAATGAGTGGGGTGTGCGCAGAA 1675
Query 1726 GTGAGCTTCTCGAGTGTTACTACTTAGCGGCTGCAACTATATTTGAATCAGAAAGGTCAC 1785
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ATGAGCTTCTCGAGTGTTACTTCTTAGCGGCTGCAACTATATTTGAATCAGAAAGGTCAC 1735
Query 1786 ATGAGAGAATGGTTTGGGCTAAGTCAAGTGTATTGGTTAAAGCCATTTCTTCTTCTTTTG 1845
||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1736 ATGAGCGAATGGTTTGGGCTAAGTCAAGTGTTTTGGTTAAAGCCATTTCTTCTT-TT--G 1792
Query 1846 GGGAATCCTCTGACTCCAGAAGAAGCTTCTCCGATCAGTTTCATGAATACATTGCCAATG 1905
|| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1793 GGAAATCCTCTGACTCCAGAAGAAGCTTCTCCGAGCAGTTTCATAAATACATTGCCAATG 1852
Query 1906 CTCGACGAAGTGATCATCACTTTAATGACAGGAACATGAGATTGGACCGACCAGGATCGG 1965
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1853 CTCGACGAAGTGATCATCACTTCAATGGCAGGAGCATGAGATTGGACCGACCAGGATCGG 1912
Query 1966 TTCAGGCCAGTCGGCTTGCCGGAGTGTTAATCGGGACTTTGAATCAAATGTCTTTTGACC 2025
||||||| |||||||||| |||| | |||||||| |||||||||||||||||||||||||
Sbjct 1913 TTCAGGCGAGTCGGCTTGTCGGAATCTTAATCGGAACTTTGAATCAAATGTCTTTTGACC 1972
Query 2026 TTTTCATGTCTCATGGCCGTGACGTTAACAATCTCCTCTATCTATCG 2072
|||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1973 TTTTCATGTCTCATGGCCGTGACGTTTACAATCTCCTCTATCAATCG 2019
Score = 335 bits (181), Expect = 1e-90
Identities = 201/211 (95%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 2249 GGCAAGGAGAAACGATGAGAAGGAGAAGACAATAAAGAGTATGGAGAAGGAGATGGGGAA 2308
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 2019 GGCAAGGAGAAACGATGAGAAGGAGAAGACAATAAGGAGTATGGAGACGGAGATGGAGAA 2078
Query 2309 AATGGTTGAGTTAGCATTGTCGGAGAGTGACACATTTCGTGACGTCAGCATCACGTTTCT 2368
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2079 AATGGTTGAGTTAGCATTGTCGGAGAGTGACACATTTCGTGTCGTCAGCATAACGTTTCT 2138
Query 2369 TGATGTAGCAAAAGCATTTTACTACTTTGCTTTATGTGGCGATCATCTCCAAACTCACAT 2428
||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 2139 TGATGTAGCAAAAGCGTTTTACTACTCTGCTTCATGTGGCGATCACCTCCAAACTCACAT 2198
Query 2429 CTCCAAAGTCTTGTTTCAAAAAGTCTAGTAA 2459
|||||||||||||||||||||||||| ||||
Sbjct 2199 CTCCAAAGTCTTGTTTCAAAAAGTCTTGTAA 2229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96901583280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5