BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02790.1 Length=1386 Score E Sequences producing significant alignments: (Bits) Value Ahg490278 jgi|Araly1|490278|fgenesh2_kg.6__3412__AT4G02790.1 1927 0.0 > Ahg490278 jgi|Araly1|490278|fgenesh2_kg.6__3412__AT4G02790.1 Length=1216 Score = 1927 bits (1043), Expect = 0.0 Identities = 1119/1156 (97%), Gaps = 4/1156 (0%) Strand=Plus/Plus Query 23 TTTCAGCCATGTTTGCTCAGTTAGCACCATCGCCGTCTCCTTCTCCGGCGAACGTTAGCC 82 ||||||| |||||||| |||||||| ||||||||||||||||||||||||||| | |||| Sbjct 1 TTTCAGCGATGTTTGCACAGTTAGCGCCATCGCCGTCTCCTTCTCCGGCGAACCTAAGCC 60 Query 83 ACTTCGTTCACCGTCGCACCTTCCGTCAATGTACATACGCCGTCTCCGCTTCTCTTCCCA 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACTTCGTTCACCGTCGCACCTTCCGTCAATGTACATACGCCGTCTCCGCTTCTCTTCCCA 120 Query 143 CTGCAAATTCCTCTCGTCCACCACCAATTCAGATTGTTGGAGGAAAGGATTTGAATTTGG 202 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 121 CTGCAAATTCCTCTCGTCCACCACCAATTCAGATTGTTGGAGGAAAAGATTTGAATTTGG 180 Query 203 ATGTTACACGGAAAG-ATGATTCAATTGGGTTCAAATTAGAGGCAAATGAAGATGAAATT 261 |||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||| Sbjct 181 ATGTTACACG-AAAGGATGATTCAATAGGGTTCAAATTAGAAGCAAATGAAGATGAAATT 239 Query 262 GATTGGATGAATCTAGAATCTGATATTCGTCTATGGACTAGAGCATTACGTCCTGTTCAG 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GATTGGATGAATCTAGAATCTGATATTCGTCTATGGACTAGAGCATTACGTCCTGTTCAG 299 Query 322 TGGTATCCAGGGCACATAATGAAAACTGAAAAGGAACTTAGGGAACAGCTTAAGTTGATG 381 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 300 TGGTATCCAGGACACATAATGAAAACTGAAAAGGAACTTAGGGAACAGCTTAAGCTAATG 359 Query 382 GATGTTGTGATTGAAGTCCGTGATGCTAGGATTCCTTTATCGACCACTCATCCAAAGATG 441 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 GATGTTGTGATTGAAGTCCGTGATGCTAGGATTCCTTTGTCGACCACTCATCCAAAGATG 419 Query 442 GATGCGTGGCTTGGGAATAGGAAACGGATATTGGTATTAAATAGAGAAGATATGATCTCG 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 420 GATGCGTGGCTTGGGAATAGGAAACGGATATTGGTATTAAATAGAGAAGATATGATATCA 479 Query 502 AACGATGATCGAAATGATTGGGCGAGATACTTTGCAAAGCAAGGAATAAAGGTCATTTTC 561 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AATGATGATCGAAATGATTGGGCGAGATACTTTGCAAAGCAAGGAATAAAGGTCATTTTC 539 Query 562 ACTAATGGCAAACTTGGGATGGGAGCTATGAAGCTAGGTCGGTTAGCCAAAAGTTTAGCA 621 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 540 ACTAATGGCAAACTTGGGATGGGAGCTATGAAGCTAGGTCGGTTAGCAAAAAGTTTAGCA 599 Query 622 GGTGACGTAAATGGGAAACGGCGAGAAAAAGGACTTCTCCCTAGATCAGTTAGAGCTGGA 681 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GGTGACGTAAATGGGAAACGGCGAGAAAAAGGACTTCTCCCTAGATCAGTTAGAGCTGGA 659 Query 682 ATAATTGGATACCCTAATGTTGGGAAATCATCTCTGATCAATCGTCTATTGAAACGAAAA 741 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 660 ATAATTGGATATCCTAATGTTGGGAAATCATCTTTGATCAATCGTCTATTGAAACGCAAA 719 Query 742 ATTTGCGCAGCAGCTCCAAGACCAGGTGTAACTAGAGAAATGAAATGGGTCAAGCTTGGG 801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 ATTTGCGCAGCAGCTCCAAGACCAGGTGTAACTAGAGAAATGAAATGGGTCAAGCTTGGG 779 Query 802 AAAGATCTTGATCTCTTAGATTCACCTGGAATGCTTCCTATGCGTATCGATGATCAAGCA 861 |||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 780 AAAGATCTTGATCTGTTAGACTCCCCTGGAATGCTTCCTATGCGTATCGACGATCAAGCA 839 Query 862 GCTGCTATAAAGCTGGCAATTTGTGATGACATTGGAGAGAAAGCTTATGACTTCACTGAT 921 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 840 GCTGCTATAAAGCTTGCAATTTGCGATGACATTGGAGAGAAAGCTTATGACTTCACTGAT 899 Query 922 GTTGCTGGAATCCTTGTGCAGATGTTAGCACGGATTCCAGAAGTAGGCGCAAAGGCTCTT 981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GTTGCTGGAATCCTTGTGCAGATGTTAGCACGGATTCCAGAAGTAGGCGCAAAGGCTCTT 959 Query 982 TACAACCGATACAAGATCCAGCTAGAAGGCAA-CTGCGGGAAAAAATTTGTGAAGACGCT 1040 || |||||||||||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct 960 TATAACCGATACAAGATCCAGCTAGAAGG-AGGCTGCGGTAAAAAATTTGTGAAGACGCT 1018 Query 1041 TGGTCTTAATTTGTTTGGTGGAGATAGTCATCAAGCTGCATTTAGAATACTAACGGATTT 1100 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1019 TGGTCTTAACTTGTTTGGTGGAGATAGTCATCAAGCTGCATTTAGAATACTGACGGATTT 1078 Query 1101 TCGCAAAGGCAAATTCGGGTATGTCTCGTTGGAGAGACCTCCACTGTGATCCAAGTTAGT 1160 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1079 CCGCAAAGGCAAATTCGGGTATGTCTCGTTGGAGAGACCTCCACTGTGATCAAAATTAGT 1138 Query 1161 AAGAGATATGCTCAAA 1176 |||||||||||||||| Sbjct 1139 AAGAGATATGCTCAAA 1154 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51802733200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5