BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02790.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490278 jgi|Araly1|490278|fgenesh2_kg.6__3412__AT4G02790.1 1927 0.0
> Ahg490278 jgi|Araly1|490278|fgenesh2_kg.6__3412__AT4G02790.1
Length=1216
Score = 1927 bits (1043), Expect = 0.0
Identities = 1119/1156 (97%), Gaps = 4/1156 (0%)
Strand=Plus/Plus
Query 23 TTTCAGCCATGTTTGCTCAGTTAGCACCATCGCCGTCTCCTTCTCCGGCGAACGTTAGCC 82
||||||| |||||||| |||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 1 TTTCAGCGATGTTTGCACAGTTAGCGCCATCGCCGTCTCCTTCTCCGGCGAACCTAAGCC 60
Query 83 ACTTCGTTCACCGTCGCACCTTCCGTCAATGTACATACGCCGTCTCCGCTTCTCTTCCCA 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTCGTTCACCGTCGCACCTTCCGTCAATGTACATACGCCGTCTCCGCTTCTCTTCCCA 120
Query 143 CTGCAAATTCCTCTCGTCCACCACCAATTCAGATTGTTGGAGGAAAGGATTTGAATTTGG 202
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CTGCAAATTCCTCTCGTCCACCACCAATTCAGATTGTTGGAGGAAAAGATTTGAATTTGG 180
Query 203 ATGTTACACGGAAAG-ATGATTCAATTGGGTTCAAATTAGAGGCAAATGAAGATGAAATT 261
|||||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 ATGTTACACG-AAAGGATGATTCAATAGGGTTCAAATTAGAAGCAAATGAAGATGAAATT 239
Query 262 GATTGGATGAATCTAGAATCTGATATTCGTCTATGGACTAGAGCATTACGTCCTGTTCAG 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATTGGATGAATCTAGAATCTGATATTCGTCTATGGACTAGAGCATTACGTCCTGTTCAG 299
Query 322 TGGTATCCAGGGCACATAATGAAAACTGAAAAGGAACTTAGGGAACAGCTTAAGTTGATG 381
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 300 TGGTATCCAGGACACATAATGAAAACTGAAAAGGAACTTAGGGAACAGCTTAAGCTAATG 359
Query 382 GATGTTGTGATTGAAGTCCGTGATGCTAGGATTCCTTTATCGACCACTCATCCAAAGATG 441
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 GATGTTGTGATTGAAGTCCGTGATGCTAGGATTCCTTTGTCGACCACTCATCCAAAGATG 419
Query 442 GATGCGTGGCTTGGGAATAGGAAACGGATATTGGTATTAAATAGAGAAGATATGATCTCG 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GATGCGTGGCTTGGGAATAGGAAACGGATATTGGTATTAAATAGAGAAGATATGATATCA 479
Query 502 AACGATGATCGAAATGATTGGGCGAGATACTTTGCAAAGCAAGGAATAAAGGTCATTTTC 561
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AATGATGATCGAAATGATTGGGCGAGATACTTTGCAAAGCAAGGAATAAAGGTCATTTTC 539
Query 562 ACTAATGGCAAACTTGGGATGGGAGCTATGAAGCTAGGTCGGTTAGCCAAAAGTTTAGCA 621
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 ACTAATGGCAAACTTGGGATGGGAGCTATGAAGCTAGGTCGGTTAGCAAAAAGTTTAGCA 599
Query 622 GGTGACGTAAATGGGAAACGGCGAGAAAAAGGACTTCTCCCTAGATCAGTTAGAGCTGGA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTGACGTAAATGGGAAACGGCGAGAAAAAGGACTTCTCCCTAGATCAGTTAGAGCTGGA 659
Query 682 ATAATTGGATACCCTAATGTTGGGAAATCATCTCTGATCAATCGTCTATTGAAACGAAAA 741
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 660 ATAATTGGATATCCTAATGTTGGGAAATCATCTTTGATCAATCGTCTATTGAAACGCAAA 719
Query 742 ATTTGCGCAGCAGCTCCAAGACCAGGTGTAACTAGAGAAATGAAATGGGTCAAGCTTGGG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTTGCGCAGCAGCTCCAAGACCAGGTGTAACTAGAGAAATGAAATGGGTCAAGCTTGGG 779
Query 802 AAAGATCTTGATCTCTTAGATTCACCTGGAATGCTTCCTATGCGTATCGATGATCAAGCA 861
|||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 780 AAAGATCTTGATCTGTTAGACTCCCCTGGAATGCTTCCTATGCGTATCGACGATCAAGCA 839
Query 862 GCTGCTATAAAGCTGGCAATTTGTGATGACATTGGAGAGAAAGCTTATGACTTCACTGAT 921
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTGCTATAAAGCTTGCAATTTGCGATGACATTGGAGAGAAAGCTTATGACTTCACTGAT 899
Query 922 GTTGCTGGAATCCTTGTGCAGATGTTAGCACGGATTCCAGAAGTAGGCGCAAAGGCTCTT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTTGCTGGAATCCTTGTGCAGATGTTAGCACGGATTCCAGAAGTAGGCGCAAAGGCTCTT 959
Query 982 TACAACCGATACAAGATCCAGCTAGAAGGCAA-CTGCGGGAAAAAATTTGTGAAGACGCT 1040
|| |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 960 TATAACCGATACAAGATCCAGCTAGAAGG-AGGCTGCGGTAAAAAATTTGTGAAGACGCT 1018
Query 1041 TGGTCTTAATTTGTTTGGTGGAGATAGTCATCAAGCTGCATTTAGAATACTAACGGATTT 1100
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 TGGTCTTAACTTGTTTGGTGGAGATAGTCATCAAGCTGCATTTAGAATACTGACGGATTT 1078
Query 1101 TCGCAAAGGCAAATTCGGGTATGTCTCGTTGGAGAGACCTCCACTGTGATCCAAGTTAGT 1160
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1079 CCGCAAAGGCAAATTCGGGTATGTCTCGTTGGAGAGACCTCCACTGTGATCAAAATTAGT 1138
Query 1161 AAGAGATATGCTCAAA 1176
||||||||||||||||
Sbjct 1139 AAGAGATATGCTCAAA 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5