BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02800.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943434 jgi|Araly1|943434|scaffold_603978.1 1467 0.0
> Ahg943434 jgi|Araly1|943434|scaffold_603978.1
Length=1046
Score = 1467 bits (794), Expect = 0.0
Identities = 973/1057 (92%), Gaps = 22/1057 (2%)
Strand=Plus/Plus
Query 89 TCTCTCTTTCTCTATCTCCATCAATGGCTGCTTCTGTCGAAACTCCTTCACCTAATCATA 148
|||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1 TCTCTCTTTCTCTACCTCCATCAATGGCTGCTTCTGTTGAAACTCCATCAACTAATCATA 60
Query 149 CGAACAACGAAGGAACACGCTTGAACATGGTTTCTGCAACTTCTTTTGATTCTTCTTC-T 207
| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
Sbjct 61 CCAACTACGAAGGAACAAGCTTGAACATGGTTTCTACAACTTCTTTTGATTCTTCTCCAT 120
Query 208 CCATCGGTTAGTCCATCTTCAGACAAACGTCTCTGGAGCAATGTACGTAACAGGGTTGAT 267
| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 121 CGAT-TATTAGTCCATCTTCAGACAAGCGTCTCTGGAGCAATCTACGTAACAGGGTTGAT 179
Query 268 GTTCTTCTCGAAGAAAATAGCAAAAATCACAAACCCGTT---ACCAATACGATTGCTATA 324
|||||||||||||||||||||||| ||||||||||| || || ||||||||||| |
Sbjct 180 GTTCTTCTCGAAGAAAATAGCAAATATCACAAACCCATTGCCGCCGATACGATTGCTGGA 239
Query 325 GAATCAGAGAGATCAAAGAGATTTAAGAATGATTCGATGCTTTTGCTTAAAGGGTTTGAT 384
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAACAGAGAGATCAATGAGATTTAAGAATGATTCGATGCTTTTGCTTAAAGGGTTTGAT 299
Query 385 TCTGTTTCTCATACTCTGTCTCTCCTTTCTAGTAATCTCGACAATGCCCTTCAGGGAGTT 444
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 TCGGTTTCTCATACTCTGTCTCAGCTTTCTAGTAATCTCGACAATGCCCTTCAGGGAGTT 359
Query 445 AGAGAATTAGCTAAACCACCTTCA-TATTCTGAGATACTCCATTCGAATCTCAAAGCTGA 503
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 360 AGAGAATTAGCTAAACCACCTTCATTA-TCTGAGATACTCCACTCGAATCTTAAAGCTGA 418
Query 504 TCAGATTCAACGACAACagaaagaagaagatgaagaggaagaagagagtaaagggaagaa 563
||||||||||||||||| ||| ||| | | | | | ||||||||||||||||||| |||
Sbjct 419 TCAGATTCAACGACAAC--AAA-AAG-A-A-G-A-A-GAAGAAGAGAGTAAAGGGACGAA 469
Query 564 gaggaaACACGAATCTGATGTTGAACAAACAGAAGATTCGTCTAATGAAGAAGAGAAGAG 623
||||||||||||||||||||||||||||| ||||||||| || ||||| |||||| ||||
Sbjct 470 GAGGAAACACGAATCTGATGTTGAACAAAAAGAAGATTCTTCGAATGAGGAAGAGCAGAG 529
Query 624 ACCAAAAGAGAGGAAAATCATGAAGAAGGCTAAGAACATTGCTATATCCATGGCAGCTAA 683
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 530 ACCAAAAGAGAGGAAAATCATGAACAAGGCTAAGAACATTGCGATATCCATGGCAGCGAA 589
Query 684 GGCGAATTCGCTTGCAAGAGAGCTTAAAACTATAAAATCAGACCTGAGTTTTATCCAAGA 743
||||||||||||||||||||||||||| | |||||||| ||| ||||||| ||||||||
Sbjct 590 AGCGAATTCGCTTGCAAGAGAGCTTAAATCCATAAAATCCGACTTGAGTTTCATCCAAGA 649
Query 744 ACGTTGTGGGTTGCTTGAAGAAGAGAACAAGAGACTCAGAGATGGGTTTGTGAAAGGTGT 803
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ACGTTGTGGATTACTTGAAGAAGAGAACAAGAGACTCAGAGATGGGTTTGTGAAAGGTGT 709
Query 804 TAGACCTGAAGAAGATGATTTGGTGAGGCTACAACTGGAGGTGTTGCTTGCAGAGAAAGC 863
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 710 TAGACCTGAAGAAGATGATTTGGTGAGGCTACAATTGGAGGTGTTGCTTACGGAGAAAGC 769
Query 864 TAGACTAGCGAATGAGAACGCGAATTTAGTTAGGGAAAATCAGTGTCTTCATCAGATGGT 923
|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 770 TAGATTAGCGAATGAGAACGCGAATTTAGTTAGAGAAAATCAGTGTCTTCACCAGATGGT 829
Query 924 TGAGTACCATCAGATTACATCTCAAGATCTATCTCCTTCATATGAACAAGTTGTTCAAGG 983
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGAGTACCATCAGATCACATCTCAAGATCTATCTCCTTCATATGAACAAGTTGTTCAAGG 889
Query 984 TTTTTGCTTAGATTTCTCATCCCCTCTGCCTCAATACGATGATGA--A-GAAGAAGAGCA 1040
||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
Sbjct 890 TTTATGCTTAGATTTCTCATCCCCTGTGCCTCAATACGATGATGATGAAGAAGAAGAGGA 949
Query 1041 TGAAACAAGAGCTCGAGATGTCTCGAAAGCCCTCAACGAAAGCTTTGAAAAAGCTG-A-A 1098
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| | | |
Sbjct 950 TGAAACAAGAGCTCGAGATGTCTCCAAAGCCCTTAACGAAAGCTTTGAAAAAGCAGCAGA 1009
Query 1099 -GAAGAACAATACTAATCAAGACACTGTTTAGACTTT 1134
||||||||||| | |||||| || |||||||| |||
Sbjct 1010 AGAAGAACAATATTGATCAAGTCATTGTTTAGATTTT 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5