BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02810.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943433 jgi|Araly1|943433|scaffold_603977.1 1000 0.0
> Ahg943433 jgi|Araly1|943433|scaffold_603977.1
Length=823
Score = 1000 bits (541), Expect = 0.0
Identities = 766/866 (88%), Gaps = 50/866 (6%)
Strand=Plus/Plus
Query 71 tctcttAACACAACACAAAAAATGTCCATCGTTGTTGGCCAAGCTTACCA-ACATCTTCC 129
|||||||||| ||||| ||| |||||||| ||||||||||||| | | || |||||||||
Sbjct 1 TCTCTTAACATAACAC-AAACATGTCCATAGTTGTTGGCCAAG-TCAGCACACATCTTCC 58
Query 130 C---AAGCAAGTAAGCCAAAATCCTGACGTGGGTGGATGGAGTTTCTTGCAATATTTCTC 186
| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 59 CAAGAAGCAAGTAAGCCAAAATCTTGACGTGGGTGGATGGAGTTTCCTACAATATTTCTC 118
Query 187 TGAGCCAAAAGGCATTGTCCAGAACAGAGAAGACGACACAAAGAAAACAGCTTATGTCTA 246
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 119 TGAACCAAAAGGCATTGTCCAAAACAGAGAAGACGACACAAAGAAAACAGCTTATGTCCA 178
Query 247 CCCGATCGAGAAGCGTTCCGTAGCTAAACTGAGCCTTGAGATGTGCACAGAGAGCCTCGG 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 TCCGATCGAGAAGCGTTCCGTAGCTAAACTGAGCCTTGAGATGTGCACAGAGAGCCTGGG 238
Query 307 GACCGAGAATGGGAGTGATAGTGGAGACGAGATGTCGTTACTTGCGCTTGAAGCAACCAA 366
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GACAGAGAATGGGAGTGATAGTGGAGACGAGATGTCGTTACTTGCGCTTGAAGCAACCAA 298
Query 367 TATTTCAAAGAGTCCTCGTCTTACTACGAAACCTCAAAAAGAAACTAGC-TTCATGACCC 425
|||||||| || | || |||||||| |||||||||||||||||||| | || |||||||
Sbjct 299 TATTTCAATGATT--TC-TCTTACTAAGAAACCTCAAAAAGAAACTAACCTT-ATGACCC 354
Query 426 GTGAGAACAGTTTTCCTCCGCCGCTAAACTCCGTCAACGGATTCAACAATAGCCGTATGG 485
|||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 355 GTGAAAACAGTTTTCCTCCGCCGTTAAAATCCGTAAACGGATTCAACAATAGCCGTATGG 414
Query 486 TGAAATCGTATAAAGAAGACGGTCGTCTTGTTGTTCAAGCAATTAGGGTTTGTTCTCCAC 545
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 415 TGAAATCGTATAAAGAAGATGGTCGTCTTGTTGTTCAAGCAATTAGGGTTTGTTCACCAC 474
Query 546 CTCGTTGCTTTGTATCTGAACGTCGTGAAGGAAGGCTTCGTCTCTGTTTATCACAGAATT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 475 CTCGTTGCTTTGTATCTGAACGTCGTGAAGGAAGGCTTCGTCTCTGTTTATCAGAGAATT 534
Query 606 CATTGAATAGCCaagacgcagaagaagagtttgaagaagaagatgaagatgatcaatacg 665
| |||||||| ||||||| |||||||||||| ||||| || |||| | | ||
Sbjct 535 CTTTGAATAGTCAAGACGGAGAAGAAGAGTTCCAAGAA-AA--TGAA--T---C----CG 582
Query 666 -atgcagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 724
|| | |||| | | ||||| || | || | ||||| ||| | | || ||||||
Sbjct 583 GATTC-GAGG--GTC-ATGAAGAT-AA-A-GA-G--GAAGA-GAA-A-G--GA-GAAGAA 626
Query 725 gaagaagaagaagaagaagaagaagaGGACGAGGAGGGCATTGTGGGGAATAATGAGAAC 784
|||||||| || ||| | ||||| | ||||||||||||||||||||||| ||||||
Sbjct 627 GAAGAAGACGATTCAGA-G--GAAGA--A-GAGGAGGGCATTGTGGGGAATAACGAGAAC 680
Query 785 TTTGAGGGTAAAAGTGGAAATAAAAAGGTTAGCA-ACAGGCCAAAAAGGAGATGCAATGA 843
||||||||||||| ||||||||||||| |||||| | |||||||| ||||||||||||||
Sbjct 681 TTTGAGGGTAAAATTGGAAATAAAAAGTTTAGCAGA-AGGCCAAAGAGGAGATGCAATGA 739
Query 844 AAATGGATGTGAGCCTAAAACTATGCTTAATTGGAAGCAGCAGCAATTTTGGGTGACCAC 903
||||||||||||||||||||| |||||||| |||||| |||| ||||||||||| |||||
Sbjct 740 AAATGGATGTGAGCCTAAAACCATGCTTAACTGGAAGGAGCAACAATTTTGGGTTACCAC 799
Query 904 TTAATGGGAATTACTCAACTCAGCAA 929
||||||| || | ||||||||||||
Sbjct 800 TTAATGGAAAAT--TCAACTCAGCAA 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5