BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G02810.1 Length=1051 Score E Sequences producing significant alignments: (Bits) Value Ahg943433 jgi|Araly1|943433|scaffold_603977.1 1000 0.0 > Ahg943433 jgi|Araly1|943433|scaffold_603977.1 Length=823 Score = 1000 bits (541), Expect = 0.0 Identities = 766/866 (88%), Gaps = 50/866 (6%) Strand=Plus/Plus Query 71 tctcttAACACAACACAAAAAATGTCCATCGTTGTTGGCCAAGCTTACCA-ACATCTTCC 129 |||||||||| ||||| ||| |||||||| ||||||||||||| | | || ||||||||| Sbjct 1 TCTCTTAACATAACAC-AAACATGTCCATAGTTGTTGGCCAAG-TCAGCACACATCTTCC 58 Query 130 C---AAGCAAGTAAGCCAAAATCCTGACGTGGGTGGATGGAGTTTCTTGCAATATTTCTC 186 | ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct 59 CAAGAAGCAAGTAAGCCAAAATCTTGACGTGGGTGGATGGAGTTTCCTACAATATTTCTC 118 Query 187 TGAGCCAAAAGGCATTGTCCAGAACAGAGAAGACGACACAAAGAAAACAGCTTATGTCTA 246 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 119 TGAACCAAAAGGCATTGTCCAAAACAGAGAAGACGACACAAAGAAAACAGCTTATGTCCA 178 Query 247 CCCGATCGAGAAGCGTTCCGTAGCTAAACTGAGCCTTGAGATGTGCACAGAGAGCCTCGG 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 179 TCCGATCGAGAAGCGTTCCGTAGCTAAACTGAGCCTTGAGATGTGCACAGAGAGCCTGGG 238 Query 307 GACCGAGAATGGGAGTGATAGTGGAGACGAGATGTCGTTACTTGCGCTTGAAGCAACCAA 366 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GACAGAGAATGGGAGTGATAGTGGAGACGAGATGTCGTTACTTGCGCTTGAAGCAACCAA 298 Query 367 TATTTCAAAGAGTCCTCGTCTTACTACGAAACCTCAAAAAGAAACTAGC-TTCATGACCC 425 |||||||| || | || |||||||| |||||||||||||||||||| | || ||||||| Sbjct 299 TATTTCAATGATT--TC-TCTTACTAAGAAACCTCAAAAAGAAACTAACCTT-ATGACCC 354 Query 426 GTGAGAACAGTTTTCCTCCGCCGCTAAACTCCGTCAACGGATTCAACAATAGCCGTATGG 485 |||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| Sbjct 355 GTGAAAACAGTTTTCCTCCGCCGTTAAAATCCGTAAACGGATTCAACAATAGCCGTATGG 414 Query 486 TGAAATCGTATAAAGAAGACGGTCGTCTTGTTGTTCAAGCAATTAGGGTTTGTTCTCCAC 545 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 415 TGAAATCGTATAAAGAAGATGGTCGTCTTGTTGTTCAAGCAATTAGGGTTTGTTCACCAC 474 Query 546 CTCGTTGCTTTGTATCTGAACGTCGTGAAGGAAGGCTTCGTCTCTGTTTATCACAGAATT 605 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 475 CTCGTTGCTTTGTATCTGAACGTCGTGAAGGAAGGCTTCGTCTCTGTTTATCAGAGAATT 534 Query 606 CATTGAATAGCCaagacgcagaagaagagtttgaagaagaagatgaagatgatcaatacg 665 | |||||||| ||||||| |||||||||||| ||||| || |||| | | || Sbjct 535 CTTTGAATAGTCAAGACGGAGAAGAAGAGTTCCAAGAA-AA--TGAA--T---C----CG 582 Query 666 -atgcagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 724 || | |||| | | ||||| || | || | ||||| ||| | | || |||||| Sbjct 583 GATTC-GAGG--GTC-ATGAAGAT-AA-A-GA-G--GAAGA-GAA-A-G--GA-GAAGAA 626 Query 725 gaagaagaagaagaagaagaagaagaGGACGAGGAGGGCATTGTGGGGAATAATGAGAAC 784 |||||||| || ||| | ||||| | ||||||||||||||||||||||| |||||| Sbjct 627 GAAGAAGACGATTCAGA-G--GAAGA--A-GAGGAGGGCATTGTGGGGAATAACGAGAAC 680 Query 785 TTTGAGGGTAAAAGTGGAAATAAAAAGGTTAGCA-ACAGGCCAAAAAGGAGATGCAATGA 843 ||||||||||||| ||||||||||||| |||||| | |||||||| |||||||||||||| Sbjct 681 TTTGAGGGTAAAATTGGAAATAAAAAGTTTAGCAGA-AGGCCAAAGAGGAGATGCAATGA 739 Query 844 AAATGGATGTGAGCCTAAAACTATGCTTAATTGGAAGCAGCAGCAATTTTGGGTGACCAC 903 ||||||||||||||||||||| |||||||| |||||| |||| ||||||||||| ||||| Sbjct 740 AAATGGATGTGAGCCTAAAACCATGCTTAACTGGAAGGAGCAACAATTTTGGGTTACCAC 799 Query 904 TTAATGGGAATTACTCAACTCAGCAA 929 ||||||| || | |||||||||||| Sbjct 800 TTAATGGAAAAT--TCAACTCAGCAA 823 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39114112842 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5