BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02820.1
Length=2012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490276 jgi|Araly1|490276|fgenesh2_kg.6__3410__AT4G02820.1 2693 0.0
> Ahg490276 jgi|Araly1|490276|fgenesh2_kg.6__3410__AT4G02820.1
Length=1975
Score = 2693 bits (1458), Expect = 0.0
Identities = 1835/2012 (91%), Gaps = 45/2012 (2%)
Strand=Plus/Plus
Query 7 AACAAAAATGAATAAAAACATGTTGGTTCGCTCTGCCCGGCCAACCCTAGCCTCCATTCA 66
||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2 AACTAAAATGAATAAAAACATGTTGCTTCGCTCTGCTCGGCCAACCCTAGCCTCCATTTG 61
Query 67 CCGCCTTTTCTCCGCCGCCGCCGCCGCGACTGTGGACACGGCGACGGCACCCGTGGTGAA 126
||||||||||| |||||||||||||||| || |||||| || ||| | | | ||||||
Sbjct 62 CCGCCTTTTCT---CCGCCGCCGCCGCGACGGTAGACACGACGGCGGAAGCAGCGGTGAA 118
Query 127 GCCTCGCAGCGGAGGAGGAAAAGGAGGAGAATCGGCCAACAAAAAAGAAACGGTAGTTGG 186
| ||||||||||||| || |||||||| || |||| | ||||||||||||||||||
Sbjct 119 GACTCGCAGCGGAGGTGG---AGGAGGAG---CGACCAATAGAAAAGAAACGGTAGTTGG 172
Query 187 AGGAAGAGACACTCTAGGAGGGAGATTACTAAGCCTTGTGTATACGAAACGCAGCGCCGT 246
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 173 AGGAAGAGACACTCTAGGAGGGAGATTATTAAGCCTTGTGTATACTAAACGCAGCGCCGT 232
Query 247 TGTTACTATCCGTAAATGGAAAGAAGAAGGCCATTCCGTTCGCAAATACGAACTTAATCG 306
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TGTTACTATCCGGAAATGGAAAGAAGAAGGCCATTCCGTTCGCAAATACGAACTTAATCG 292
Query 307 TATCGTTAGAGAGCTTCGTAAGATCAAACGCTATAAACACGCTCTTGAGATATGTGAATG 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AATCGTTAGAGAGCTTCGTAAGATCAAACGCTATAAACACGCTCTTGAGATATGTGAATG 352
Query 367 GATGGTTGTACAGGAAGATATAAAGCTACAAGCAGGTGATTATGCTGTACATTTGGATTT 426
||||||| ||||||||||||||||| | ||||| |||||||||||||| |||||||||||
Sbjct 353 GATGGTTCTACAGGAAGATATAAAGTTGCAAGCTGGTGATTATGCTGTGCATTTGGATTT 412
Query 427 GATATCTAAAATCCGTGGTTTAAACAGTGCTGAGAAGTTTTTCGAAGATATGCCAGATCA 486
||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 413 GATTTCTAAAATCCGTGGTTTAAACAGCGCGGAGAAGTTTTTCGAAGATATGCCGGATCA 472
Query 487 AATGAGAGGTCATGCTGCGTGTACATCTCTTTTACATAGCTATGTGCAGAACAAGTTGTC 546
|||| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 473 AATGCGAGGTCATGCTGCTTGTACATCACTTCTACATAGCTATGTGCAGAACAAGTTGTC 532
Query 547 TGATAAAGCTGAGGCATTGTTTGAGAAAATGGGTGAATGTGGTTTCTTGAAGTCTTGTTT 606
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGACAAAGCTGAGGCTTTGTTTGAGAAAATGGGTGAATGTGGTTTCTTGAAGTCTTGTTT 592
Query 607 GCCTTACAATCATATGTTATCGATGTATATATCGAGAGGACAGTTTGAGAAAGTCCCTGT 666
|||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||| | ||
Sbjct 593 GCCTTACAATCATATGCTATCGATGTTTATATCGAAAGGCCAGTTTGAGAAAGTCTCGGT 652
Query 667 GTTGATTAAGGAGTTGAAGATTAGAACATCTCCTGATATTGTTACTTATAATCTCTGGCT 726
|||||||||||| |||||||| | |||||| ||||||||||||||||||||||| |||||
Sbjct 653 GTTGATTAAGGAATTGAAGATGAAAACATCGCCTGATATTGTTACTTATAATCTATGGCT 712
Query 727 TACTGCGTTTGCTTCTGGAAATGATGTCGAGGGTGCGGAGAAAGTTTATCTTAAGGCGAA 786
|||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||||||
Sbjct 713 GACTGCGTTTGCTTCGGGAAACGATGTTGAAGGTGCAGAAAAAGTTTATCTTAAGGCGAA 772
Query 787 GGAAGAGAAGTTGAATCCGGATTGGGTGACTTATAGTGTGTTAACGAATTTGTATGCTAA 846
||||| ||| |||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 773 GGAAGCTAAGCTGAATCCGGACTGGGTGACTTATAGCGTGCTAACGAATTTGTATGCTAA 832
Query 847 GACTGATAATGTCGAAAAGGCGAGACTTGCTTTGAAGGAGATGGAGAAGTTGGTTTCTAA 906
|||||||||| |||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 833 GACTGATAATCTCGAAAAGGCAAAACTTGCTTTGAAGGAGATGGAGAAGTTAGTTTCTAA 892
Query 907 GAAGAACCGGGTTGCTTATGCTTCTCTTATTAGTCTGCATGCGAATTTGGGTGACAAAGA 966
||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 893 GAAAAACCGGGTTGCTTATGCTTCTCTCATTAGTCTGCACGCGAACTTGGGCGACAAAGA 952
Query 967 TGGAGTGAACTTAACCTGGAAGAAGGTTAAGTCTTCTTTCAAGAAAATGAATGATGCGGA 1026
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 953 TGGAGTCAACTTAACTTGGAAGAAGGTTAAGTCGTCTTTCAAGAAAATGAATGATGCGGA 1012
Query 1027 GTATCTCAGTATGATATCTGCGGTTGTGAAGCTTGGAGAGTTTGAACAAGCTAAAGGTTT 1086
|| || |||||||||||||| || ||||||||||| || || |||||||| ||||||||
Sbjct 1013 ATACCTTAGTATGATATCTGCAGTGGTGAAGCTTGGTGAATTCGAACAAGCCAAAGGTTT 1072
Query 1087 GTATGACGAATGGGAATCTGTTTCGGGAACAGGAGATGCTAGAATCCCGAATCTAATCCT 1146
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1073 GTATGACGAATGGGAATCTGTTTCTGGAACAGGAGATGCTAGAATCCCGAATCTAATCCT 1132
Query 1147 TGCTGAGTACATGAACAGAGATGAGGTTCTTCTAGGAGAAAAGTTTTACGAACGGATTGT 1206
||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||| |||| |||||
Sbjct 1133 TGCCGAGTACATGAACAGAGACGAGATTCGTCTAGGAGAGAAGTTCTACAAACGAATTGT 1192
Query 1207 GGAGAAAGGGATAAACCCGAGCTATTCTACATGGGAAATTCTCACATGGGCTTATTTGAA 1266
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GGAGAAAGGGATAAACCCTAGCTATTCTACATGGGAAATTCTCACATGGGCTTATTTGAA 1252
Query 1267 GCGTAAAGACATGGAGAAAGTATTAGATTGTTTTGGGAAAGCTATTGATTCTGTGAAGAA 1326
||||||||| |||| ||||| || |||||||||| |||||| |||||||||||||||||
Sbjct 1253 GCGTAAAGATTTGGATAAAGTTTTGGATTGTTTTGAGAAAGCCATTGATTCTGTGAAGAA 1312
Query 1327 ATGGACTGTGAATGTAAGATTGGTTAAAGGAGCGTGCAAGGAACTTGAGGAACAAGGGAA 1386
||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||
Sbjct 1313 ATGGACTGTGAATGTAAGATTGGTTAAAGCAGTGTCCAAGGAACTCGAGGAACAAGGGAA 1372
Query 1387 TGTTAAAGGAGCAGAGAAGCTAATGACTCTGCTCCAAAAGGCTGGTTATGTGAACACTCA 1446
|||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||
Sbjct 1373 TGTTAAAGGAGCAGAGAAGCTAATGATTCTACTACAAAAGGCTGGTCATGTGAACACTCA 1432
Query 1447 GCTCTACAATTCCTTGTTACGGACATACGCTAAAGCAGGGGAAATGGCACTCATAGTTGA 1506
||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||
Sbjct 1433 GCTCTACAATTCCTTATTACGTACTTACGCTAAAGCTGGTGAAATGGCACTCATAGTTGA 1492
Query 1507 AGAGCGAATGGCAAAGGATAATGTAGAGTTAGATGAAGAGACTAAGGAGCTTATAAGACT 1566
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 AGAACGAATGGCAAAGGATAATGTAGAGTTAGATGAAGAGACTAAGGAGCTTATAAGACT 1552
Query 1567 AACCAGTCAAATGCGTGTGACTGAAATCTCGTCCACCATTTCTTAGTATGAAAGCTACAG 1626
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1553 AACCAGTCGAATGCGTGTGACTGAAATCTCGTCCACCATTTCTTAGCATGAAAGCTGCAG 1612
Query 1627 AGTTAGTTTCAGTCTGCAACTTCCACAAACCGAAGAATACAGAAACCGTTCTCTCAAGTC 1686
|||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1613 AGTTAGTTTCGGACTGCAACTTCCACAAACCGAAGAATACAGAAACCGTTCTCTAAAGTC 1672
Query 1687 CGTACCAATCGAGATACTCGTCTTGAAGCAGTAACATTCCACTTACTCGGACATTTAGAC 1746
|||||||| |||||||| |||||||||||||||||||| |||| ||| ||||||||||
Sbjct 1673 TGTACCAATGGAGATACTTGTCTTGAAGCAGTAACATTCGACTTGCTCTGACATTTAGAG 1732
Query 1747 CTTGAGGAGAGTGTTCAAAGCTGCTA-AGGAATGAAGTTGCTACAAAGATATGatttttc 1805
|||||| ||||||| ||||||||| | ||||||||||||||| | | ||||||
Sbjct 1733 CTTGAGCAGAGTGTCCAAAGCTGC-AGAGGAATGAAGTTGCT-------T-T--TTTTTC 1781
Query 1806 ctgttttttaattttcagaatttaatatgattaaaatctc-g----ttttatatttttGG 1860
| ||| ||||||||| |||||||||| ||| | |||||||| |||||
Sbjct 1782 -T-TTT---------CAGAATTTAGTATGATTAAAGTCTGTGCCAATTTTATATATTTGG 1830
Query 1861 TTCTCTATAGTTCTTCTGATGATGTCAAATGATCTTTGAGAGGTTGACTAACTGAAAAAC 1920
||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 TTCTCTATA-T------GATGATGTCAAATGATCTTTGAGAGGTTGACTAACTGAAAAAC 1883
Query 1921 CTACTTCGACTCTTCTTGTTGGGTAGTTATGACTTGTGTAA-GCTTATGTAAGCTTTCAA 1979
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1884 CTACTTCGACTCTTCTTGTTGGGTAGTTATGACTTGTGTAAAGCTTATGTAAGCTTTCAA 1943
Query 1980 AGACTTGTGTCCAAAGTGGATTTGTTCACCTC 2011
||||||||||||||||||||||||||||||||
Sbjct 1944 AGACTTGTGTCCAAAGTGGATTTGTTCACCTC 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75647226570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5