BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02830.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490275 jgi|Araly1|490275|fgenesh2_kg.6__3409__AT4G02830.1 990 0.0
> Ahg490275 jgi|Araly1|490275|fgenesh2_kg.6__3409__AT4G02830.1
Length=742
Score = 990 bits (536), Expect = 0.0
Identities = 649/701 (93%), Gaps = 17/701 (2%)
Strand=Plus/Plus
Query 62 ttcttcttctAAGATTAATTCAAAGTGTTTAATACTTTTGAAATTTTAAGTTTCTTTTTG 121
|||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 29 TTCTTCTTCTAAGATTGATTCAAAGTGTTTCATATTTTTGAAATTTTAATTTTCTTTTTG 88
Query 122 GTCAGTTTCAAATGGGTGACATCATCGGTCACAAGGATAGGCAAATATGGCCACCCTCTC 181
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 89 GTCAGTTTCAAATGGGTGACATCATCGGTCACAAGGATAGGCAAATATGGTCA-CC-CTC 146
Query 182 ATCATGTTCTTCAAGATCCATTGTTTGATCATTCCAACAAACATCAGTTGCAGAAATATG 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 -TCATGTTCTTCAAGATCCATTGTTTGATCATTCCAACAAACATCAGTTGCAGAAATATG 205
Query 242 TCAAGAACCACCATCACCACGGCAACGGTGAATTTCGTCGGCCCGGGGCACCTCCTCTTA 301
||||||||||||| ||||| |||| ||||||||| ||||||||||| ||||||||||| |
Sbjct 206 TCAAGAACCACCACCACCATGGCAGCGGTGAATTCCGTCGGCCCGGTGCACCTCCTCTCA 265
Query 302 GACAAACATTTCCTTTGAACTATAATACAAGACAAAAGCACCAAAGCAATTGGCAAAGGA 361
| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 266 GGCAAACTTTTCCTTTGAACTATAATACAAGAAAAAAGCACCAAAGCAATTGGCAAAGGA 325
Query 362 GTAAAGGAGA---GGATCGTATGCAAGCATTTTTCTTGGT-TACACCGGGCCGTACAACT 417
|||||||||| ||| ||||||||||||||||||||||| | | || ||||||||||||
Sbjct 326 GTAAAGGAGATCAGGACCGTATGCAAGCATTTTTCTTGGTGT-CGCCAGGCCGTACAACT 384
Query 418 TCTGGCACCGGAGTTTTTCTTCCAGCCACGGCTTCTCATCCACCCACCaaaaaaaCAGCT 477
||||||||||||||||||||||| ||||| || |||||||| |||||||||||| |||||
Sbjct 385 TCTGGCACCGGAGTTTTTCTTCCGGCCACCGCCTCTCATCCGCCCACCAAAAAACCAGCT 444
Query 478 TGCTCACCGGTGCTTCTCCCGACTCGTGTAGTTCAAGCACTCAATCTTAACATTCACAAC 537
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 445 TGCTCGCCGGTGCTTCTCCCGACGCGTGTAGTTCAAGCACTCAATCTTAACATTCACAAC 504
Query 538 AACGGTATCCATATTTCTCCTCGTCCAGAAATTAGAGAAAATGATTCGAAGAAGAAGAGC 597
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 505 AACGGTATCCATATTTCTCCTCGTCCAGAAATTCGAGAAAACGATTCGAAGAAGAAGAAC 564
Query 598 GAAATGTTGGCAACAACACCTATCAAGATTGAAGCAGAAAATCCT-ATTGATTCGCCGGA 656
||||||||||||||| | | ||| || ||||||| |||||||| | ||||||||||||||
Sbjct 565 GAAATGTTGGCAACA-C-C-TATGAACATTGAAGTAGAAAATC-TGATTGATTCGCCGGA 620
Query 657 GAAACTTCTCCCCGAGGAATGGATTTATTGATGACCCAACCATTAG-TATGGaaaagtag 715
|||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||
Sbjct 621 GAAACTTCTCCCCGAGGAATGGATCTATTGATGACCCGACCATTAAATGTGGAAAAGTAG 680
Query 716 aatcaaataaaataaaatgaaagattctt--gtgttg-atg 753
|||||||||||||||||||||||||| || |||||| |||
Sbjct 681 AATCAAATAAAATAAAATGAAAGATTATTTTGTGTTGTATG 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5