BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02850.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327516 jgi|Araly1|327516|fgenesh1_pm.C_scaffold_6002736 303 1e-81
Ahg490273 jgi|Araly1|490273|fgenesh2_kg.6__3407__AT4G02860.1 228 7e-59
Ahg311422 jgi|Araly1|311422|fgenesh1_pm.C_scaffold_1000202 219 4e-56
> Ahg327516 jgi|Araly1|327516|fgenesh1_pm.C_scaffold_6002736
Length=795
Score = 303 bits (164), Expect = 1e-81
Identities = 263/310 (85%), Gaps = 10/310 (3%)
Strand=Plus/Plus
Query 433 GATCGAAATGAATTTCCCTGTGATTACAACTTGTGAGTACAGCTCCAAGGATGTCTCCAT 492
||||||| ||||||| ||| |||| | || |||||||||| |||||| |||||||||||
Sbjct 327 GATCGAATTGAATTTACCTATGATCAGAAGATGTGAGTACAACTCCAATGATGTCTCCAT 386
Query 493 CTTCTCTAAAGCCTTGAATGGAGCTACCATTGTCGATGTTC-GAGAAACTAAAACTGATA 551
||||| |||||||| || ||| |||||||||| || | || ||| ||||| ||| | ||
Sbjct 387 GTTCTCCAAAGCCTTAAACGGATCTACCATTGTTGACG-TCAGAGGAACTACAACAGCTA 445
Query 552 G-ACTCATCTTTAAACCCTTG-ATAGGAGCTT-TCAAAACAACTTCAACAGACCAAATCA 608
| || |||| | || ||||| || |||| || ||| || ||||||| ||| ||||||
Sbjct 446 GCAC-CATCCCTGAAGCCTTGAAT-GGAG-TTGCCAAGGCAGCTTCAACCGACAAAATCA 502
Query 609 TCGTTGTGCTTTCATCTTGGGAATCTGTCATTGAATTTCAGCCAAGAGTGGATGATATCG 668
||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 503 TCGTTGTGCTTCCATATTGGGAATCTGTCATTGAATTGCAGCCAAGAGTGGGTGATATCA 562
Query 669 TGAAATGCCCT-GGCAAAGTGATGATTGTTACCGCTGCTGCTCCTCAAGGATCTCCTTTT 727
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 563 TGAAATG-CCTCGGCAAAGTGATGATTGTTACCGCTGCTGCTCCTCAAGGATCTCCATTT 621
Query 728 GACTTCTGCA 737
|| |||||||
Sbjct 622 GATTTCTGCA 631
Score = 124 bits (67), Expect = 1e-27
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 774 ACTCTGTATGTGGAAGTGCACATTGTTCATTAGCACATTACTGGAGCCTCAAGATGAACA 833
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 632 ACTCTGTATGTGGAAGTGCACATTGTTCATTAGCACATTACTCGAGCCTCAAGATGAACA 691
Query 834 AGTGTGATTTCGT 846
||| |||||||||
Sbjct 692 AGTCTGATTTCGT 704
> Ahg490273 jgi|Araly1|490273|fgenesh2_kg.6__3407__AT4G02860.1
Length=1135
Score = 228 bits (123), Expect = 7e-59
Identities = 298/379 (79%), Gaps = 25/379 (7%)
Strand=Plus/Plus
Query 602 CAA-ATCATCGTTGTGCTTTCATCT-TGGGAATCTGTCATTGAATTTCAGCCAAGAGTGG 659
||| ||| ||||||||||| ||||| | ||||||||||| |||||| || |||||| |||
Sbjct 528 CAACATCCTCGTTGTGCTTCCATCTAT-GGAATCTGTCACTGAATTGCAACCAAGAATGG 586
Query 660 ATGATATCGTGAAATG-CCCTGGCAAAGTG-ATGATTGTTACCGCTGCTGCTCCT-CAAG 716
||||||| ||||||| |||| || | | | || ||||| || ||||||| | || | ||
Sbjct 587 ATGATATATTGAAATGCCCCT-GCGATG-GCATAATTGTGACAGCTGCTGGTTCTGC-AG 643
Query 717 GATC-TCCTTTTGACTTCTGCAGTCGACTCTTT-GCTCCTAAACTAGG-GCTCAATGAGG 773
|||| || | ||| |||| |||||| | ||| |||||||| | || | | ||||||
Sbjct 644 GATCGGCC-TATGATTTCTACAGTCG-TTATTTCGCTCCTAAGTTCGGAG-TTGATGAGG 700
Query 774 ACTCTGTATGTGGAAGTGCACATTGTTCATTAGCACATTACTGGAGCCTCAAGATGAACA 833
|| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 701 ACCCTGTTTGTGGAAGTGCACATTGTGCATTGGCACATTACTGGAGCCTCAAGATGAACA 760
Query 834 AGTGTGATTTCGTCGCTTTTGCG-GCTTCGCAAAGAAGTGGAACACTCAAGG-TTCAT-T 890
| ||||||||| | || | | ||||||| || ||||||||| | | || ||||| |
Sbjct 761 AATGTGATTTCCTAGCCTAC-CAAGCTTCGCGTAGGAGTGGAACAATTA-GGATTCATCT 818
Query 891 ATGATAAGGAGAAGCAGAGAGT-CTTGCTTACCGGGAAAGCTGTGACTGTCATGAAAGGC 949
| || |||||||||||||| || || || | || ||| | |||||||| ||| |||||
Sbjct 819 A-GACAAGGAGAAGCAGAGGGTTCTC-CTGAGAGGCAAATCCGTGACTGTGATGGAAGGC 876
Query 950 TC-TATCTTAGTTTAATCT 967
| | |||| |||| ||||
Sbjct 877 -CATGTCTTGGTTTGATCT 894
> Ahg311422 jgi|Araly1|311422|fgenesh1_pm.C_scaffold_1000202
Length=852
Score = 219 bits (118), Expect = 4e-56
Identities = 291/371 (78%), Gaps = 26/371 (7%)
Strand=Plus/Plus
Query 605 ATCATCGTTGTGCTTTCATCTTGGGAATCTGTCATTGAATTTCAGCCAAGAGTGGAT--G 662
||| ||||||||||||||||||||||| ||||||||||||| ||||||||| | ||| |
Sbjct 493 ATCCTCGTTGTGCTTTCATCTTGGGAAGCTGTCATTGAATTGCAGCCAAGATTAGATGAG 552
Query 663 ATATCGTGAAATGCCCTGGCAAAGTG-ATGAT--TGT-TACCGCTGCTGCTCCTCAAGGA 718
||||| |||||||||| | ||| | ||||| ||| | |||||||| || || | |
Sbjct 553 ATATC--GAAATGCCCTTGTGAAG-GAATGATGGTGTCTGCCGCTGCTTCTGCT---GAA 606
Query 719 TCTCCTTTTGACTTCTGCAGTCGACT-CTTTGCTCCTAAACTAGGGCTCAATGAGGACTC 777
||| ||| ||| ||||| ||||| || |||||| || | | | || ||||||||||| |
Sbjct 607 TCTACTTATGATTTCTGTAGTCG-CTACTTTGCCCCGAGATTCGGAATCAATGAGGACCC 665
Query 778 TG-TATGTGGAAGTGCACATTGTTCATTAGCACATTACTGGAGCCTCAAGATGAACAAGT 836
|| || ||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 666 TGTTA-CTGGAAGTGCGCATTGTGCCTTAGCACATTACTGGAGCCTCAAGATGAACAAGT 724
Query 837 GTGATTTCGTCGCTTTTGC-GGCTTC--GCAAAGAAGTGGAACACTCAAGGTTCATTATG 893
|||||||| |||| | | |||||| ||| || | ||||| | ||||| || ||
Sbjct 725 GTGATTTCTTCGCCTAC-CAGGCTTCAAGCAGAGG-G-GGAACGTTGAAGGTGCACC-TG 780
Query 894 -ATAAGGAGAAGCAGAGAGT-CTTGCTTACCGGGAAAGCTGTGACTGTCATGAAAGGCTC 951
| || ||||||||||| || || ||| | || ||||| || ||||| ||| |||| |
Sbjct 781 GACAAAGAGAAGCAGAGGGTTCT-GCTCAGAGGCAAAGCAGTCACTGTTATGGAAGGTTA 839
Query 952 TATCTTAGTTT 962
| |||||||||
Sbjct 840 TGTCTTAGTTT 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5