BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02860.1
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490273 jgi|Araly1|490273|fgenesh2_kg.6__3407__AT4G02860.1 1655 0.0
> Ahg490273 jgi|Araly1|490273|fgenesh2_kg.6__3407__AT4G02860.1
Length=1135
Score = 1655 bits (896), Expect = 0.0
Identities = 1061/1137 (93%), Gaps = 26/1137 (2%)
Strand=Plus/Plus
Query 75 ATGGGGAAGAAGAAAGGTGTCAAGTACTTTGTGGTGGATGCTTTCACTGATTCGGCTTTC 134
||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAGAAGAAAACTGTGAAATACTTTGTGGTGGATGCTTTCACTGATTCGGCTTTC 60
Query 135 AAAGGGAATCCAGCTGCTGTTTGTTTTCTC-A--ACGACGA-TA-A-CGAGAGAGATGAC 188
|||||||||||||||||||||||||||||| | ||||||| | | ||||||||| |||
Sbjct 61 AAAGGGAATCCAGCTGCTGTTTGTTTTCTCAACGACGACGACAACAGCGAGAGAGACGAC 120
Query 189 ACGTGGCTTCAGTCTCTCGCCGCCGAATTCAACATCTCCGAAACTTGTTTTCTTATTCCC 248
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 ACGTGGCTTCAGTCTCTAGCCGCCGAATTCAACATCTCCGAAACTTGTTTTCTTACTCCC 180
Query 249 ATCACTGGTTTCCAAGCTCGCTTCAGTCTACGCTGGTTTACCCCTTTAGCCGAGGTGGAT 308
|||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 181 ATCACTGGTTTCGAAGCTCGCTTCAGTCTCCGGTGGTTTACCCCTTTAGCTGAGGTGGAT 240
Query 309 CTCTGTGGTCATGCAACTTTGGCATCTGCTCATTGTCTCTTCTCAAATGGTTTGGTTGAT 368
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTGTGGTCATGCAACTTTGGCATCTGCTCATTGTCTCTTCTCAAATGGTTTGGTTGAT 300
Query 369 TCAGACATGGTTGAGTTTGTCACAAGATCAGGGATTCTTACAGCCAAGCGTGTTTCAGAT 428
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TCAGACATGGTTGAGTTTGTCACAAGATCAGGGATTCTTACAGCTAAGCGTGTTTCAGAT 360
Query 429 ACTTCAGAGCTCAGTGATGGTGAAGTGAAAGGAGGAACCTTTTTGATCGAATTGAATTTC 488
||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 361 ACTTCAGAGCTCAATGATGGTGAAGTGAAAGGAGGATCCTTTTTGATTGAGTTGAATTTC 420
Query 489 CCTGTGGTTACAACTTGTGATGTTAATCTCAGTGATGTATCCTCTTCTATGATCACCAAG 548
||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||
Sbjct 421 CCTGTGGTTACAACTTGTGATATTAATTTCAGTGATGTCTCCTCTTCTATGATTACCAAG 480
Query 549 GCCTTGAACGGAGCTACCATTGTTGATATAAAAGCTACTGCAACAAACAACATCCTCGTT 608
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GCCTTGAACGGAGCTACCATTGTTGATATAAAAGCTACTGCGACAAACAACATCCTCGTT 540
Query 609 GTGCTTCCATCTAAGGAATCTGTCACTGAATTGCAACCAAGAATGGATGATATATTGAAA 668
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGCTTCCATCTATGGAATCTGTCACTGAATTGCAACCAAGAATGGATGATATATTGAAA 600
Query 669 TGCCCCTGTGATGGCATAATTGTGACAGCTGCTGGTTCTACAGGATCGTCCTATGATTTT 728
|||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 601 TGCCCCTGCGATGGCATAATTGTGACAGCTGCTGGTTCTGCAGGATCGGCCTATGATTTC 660
Query 729 TACAGTCGGTACTTT-GCTCCTAAGTTCGGAGTTGATGAGGACCCTGTTTGTGGAAGTGC 787
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACAGTCGTTA-TTTCGCTCCTAAGTTCGGAGTTGATGAGGACCCTGTTTGTGGAAGTGC 719
Query 788 ACATTGTGCATTGGCACATTACTGGAGCATCAAGATGAATAAGTTTGATTTCTTAGCCTA 847
|||||||||||||||||||||||||||| |||||||||| || | ||||||| |||||||
Sbjct 720 ACATTGTGCATTGGCACATTACTGGAGCCTCAAGATGAACAAATGTGATTTCCTAGCCTA 779
Query 848 CCAAGCTTCGAGTAGGAGTGGAACGATAAGGATTCATCTAGACAAGGAGAAGCAGAGGGT 907
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 780 CCAAGCTTCGCGTAGGAGTGGAACAATTAGGATTCATCTAGACAAGGAGAAGCAGAGGGT 839
Query 908 TCTCCTGAGAGGCAAAGCCGTTACTGTGATGGAAGGCCATGTCTTGGTCTGATCTGAAAT 967
|||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||
Sbjct 840 TCTCCTGAGAGGCAAATCCGTGACTGTGATGGAAGGCCATGTCTTGGTTTGATCTGAAAT 899
Query 968 TATATACTGTGTTGA---A-TTCTGCTACAAAACAAGCTCCTA--TA-A-TG-AATAACA 1018
|||||||||||||| | |||||||||||||||||||||| || | || |||||||
Sbjct 900 GATATACTGTGTTGATTGACTTCTGCTACAAAACAAGCTCCTTCCTACAATGGAATAACA 959
Query 1019 ATGAATTTACTCTTTTCAAAACAAAATAGTGTCAGCTGACTGATCC-ACCTTACATGAGG 1077
|| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 960 ATAAATTTACTATATTCAAAACAAAATAGTGTCAGCTGACTGATCCCACCTTGCATGAGG 1019
Query 1078 TGTGGTCGCTCGTAGGAGCCACTGATAGGATATGTCCATGTTTTCTGACCATGTGTGTTC 1137
|||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1020 TGTGGTA-CTCGTAGGAGCCACTGATAGGATATGTCTATGTTTACTGACCATGTGTGTTC 1078
Query 1138 ATTT-TGAATGACTC-T-----CCAACAGTTCTCTTTCACTCACAGACAATACATTT 1187
|||| |||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 1079 ATTTGTGAATGACTCATATGATCCAACAGTTCTCTTTCACTCACAGACAATTCATTT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5