BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02870.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352538 jgi|Araly1|352538|fgenesh1_pg.C_scaffold_6003131 451 4e-126
Ahg477069 jgi|Araly1|477069|fgenesh2_kg.2__2199__AT1G79000.1 67.6 2e-10
> Ahg352538 jgi|Araly1|352538|fgenesh1_pg.C_scaffold_6003131
Length=1305
Score = 451 bits (244), Expect = 4e-126
Identities = 427/510 (84%), Gaps = 34/510 (7%)
Strand=Plus/Plus
Query 408 AGAAATGCAGGGTGAAGGATATGGCACAAACACTCGTGGCCCTTTCGAAAACAAGATTGA 467
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 771 AGAAATGCAGGGTGAAGGATATGGCACACACACTTGTGGCCCTTTGGAAAACAAGATTGA 830
Query 468 TATTG--GTT----CTTTTGGAAAGAGTGGG-TCGGTGATGAACGTAGAAAGAGAGAAAG 520
||||| ||| |||||||||| || || ||| | ||||||| ||||||||||||||
Sbjct 831 TATTGCTGTTGGTTCTTTTGGAAAC-GTTGGATCGATTATGAACGCAGAAAGAGAGAAAG 889
Query 521 AAAAGATTGTGATGATCCCTACCCCAAGATTTGGCAACGCAACACCACAATGGACCATAA 580
|||||| |||||||||||||||||| ||||||| | | ||| | | ||||||||||||||
Sbjct 890 AAAAGACTGTGATGATCCCTACCCCTAGATTTGTCGAGGCA-C-C-ACAATGGACCATAA 946
Query 581 AGAAGAAACTGAGCTC-GTACGATATTAGGCCTCGTTGTGGCAGACTTATTCTGCAAA-G 638
||||||| |||| | | |||||||| || |||| || || ||||||||||||||||| |
Sbjct 947 AGAAGAAGCTGACC-CAGTACGATACTAATCCTCATTATGACAGACTTATTCTGCAAAAG 1005
Query 639 TAGCTCCTTTAATGAGCACATTGGAAGACATTTACCTAAAG-A-----CCAAATGATAAA 692
||||||||| |||||||||||||||||||||| ||||||| | ||||| | ||
Sbjct 1006 -AGCTCCTTTGATGAGCACATTGGAAGACATTTGCCTAAAGCAGATTACCAAAAGGTAGT 1064
Query 693 A-ATTAATGTCGGAGTCA--A-TGTTAACGTATATGACTACGACACGGGCACATTGCATG 748
| || || ||||| || | |||||||||||||||||||||||||| |||| ||||||
Sbjct 1065 AGATAAAA-TCGGAACCACGACTGTTAACGTATATGACTACGACACGGACACAATGCATG 1123
Query 749 AGCTGCGTCTGGAATATCAGAGGCAA--TATGGTCTA-GCGCA-TGGCTGGCAAGAAGAT 804
||||||||||||||| | |||| || ||||||||| | | | ||| |||| ||| ||
Sbjct 1124 AGCTGCGTCTGGAAT-T-AGAGAAAAGCTATGGTCTAAG-G-AGTGGTTGGCTGGAACAT 1179
Query 805 TTTGTCCGCAGGAGACACTTGAAGCAAAAAGACGAGATTGGACTCTTATGGGATTTTTCT 864
||||| ||||||||| ||||| |||||| || |||||||||||||||||||||| ||||
Sbjct 1180 TTTGTTCGCAGGAGATGCTTGAGGCAAAACGAAGAGATTGGACTCTTATGGGATTCTTCT 1239
Query 865 TCTTCTAGGCTTCAATTTGGCGTCATTTCT 894
|||||||| |||| |||||||||||||||
Sbjct 1240 GCTTCTAGGATTCAGTTTGGCGTCATTTCT 1269
Score = 224 bits (121), Expect = 9e-58
Identities = 192/225 (85%), Gaps = 10/225 (4%)
Strand=Plus/Plus
Query 103 ACAGATGAAGAAGTCTTGAAGGGATATGAATCGTACAGGGAAAACCCAAG-TAACTACGA 161
||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 289 ACAGATGAAGAAGTCTTTAAGGGATATGAATCGTACAGGGAAAACCC-AGATTACTACGA 347
Query 162 CAATGATAATATCCTTAT-ATACAC---AGACACGTTCAATCTTTATGATGACATGTTCG 217
|| ||| || |||||||| | |||| | ||||||| |||| ||||| |||||||||||
Sbjct 348 CAGTGACAAAATCCTTATCA-ACACTGAAAACACGTTGAATCCTTATGGTGACATGTTCG 406
Query 218 AAGGTTCTCTTGATTCTACAAGGAACTTTGGTGCACAAAAAGATCCTAATGTGCTCGTGA 277
||||||||||||||||| || || || ||||| ||||||| |||| | ||| ||||| ||
Sbjct 407 AAGGTTCTCTTGATTCTGCAGGGTACATTGGTTCACAAAACGATCATGATGCGCTCGAGA 466
Query 278 TGCAAAGGCTG---TTACACAACTCCGGAAGTCTAATTGGTGTTG 319
||| |||| || ||||||||||| ||||||| |||||||||||
Sbjct 467 TGCCAAGGTTGACGTTACACAACTCTGGAAGTCAAATTGGTGTTG 511
Score = 171 bits (92), Expect = 1e-41
Identities = 133/152 (88%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 408 AGAAATGCAGGGTGAAGGATATGGCACAAACACTCGTGGCCCTTTCGAAAACAAGATTGA 467
|||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 549 AGAAATGCAGGGTGAAGGATATGGGACAAACACTTGTGGCCCTTGCGAAAACAAGATTGA 608
Query 468 TA----T--TGGTTCTTTTGGAAAGAGTGGGTCGGTGATGAACGTAGAAAGAGAGAAAGA 521
|| | ||||||| ||||||| | || || ||||||||| |||||||||||||||
Sbjct 609 TATTGCTGCTGGTTCTGTTGGAAACATTGAATCCTTGATGAACGCAGAAAGAGAGAAAGA 668
Query 522 AAAGATTGTGATGATCCCTACCCCAAGATTTG 553
|||||||||||||||||||||||| ||||||
Sbjct 669 AAAGATTGTGATGATCCCTACCCCTGGATTTG 700
> Ahg477069 jgi|Araly1|477069|fgenesh2_kg.2__2199__AT1G79000.1
Length=5908
Score = 67.6 bits (36), Expect = 2e-10
Identities = 94/121 (78%), Gaps = 8/121 (7%)
Strand=Plus/Plus
Query 338 TAGATTTAGCTACATTGTTCGCTGATTCTA-CTGAAGATTCGA-AGCTTCCTTATG-TTA 394
|||||| || ||||| || | || || ||| | ||| |||| | ||| |||||| | |
Sbjct 1386 TAGATTCAGGTACATCGTACACTAATCCTACCAGAA-ATTC-ACAGCAGGCTTATGATAA 1443
Query 395 TCTATGAGGGTTTAGAAATGCAGGGTGAAGGATATGGCACAAACA-CTCGTGGCCCTTTC 453
|| | || ||| || ||||||||||||||||||||||||||||| ||| || ||| |||
Sbjct 1444 CCT-TCAGCGTTCAGGAATGCAGGGTGAAGGATATGGCACAAACAACTC-TGACCCATTC 1501
Query 454 G 454
|
Sbjct 1502 G 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5