BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02900.1
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352535 jgi|Araly1|352535|fgenesh1_pg.C_scaffold_6003128 3677 0.0
> Ahg352535 jgi|Araly1|352535|fgenesh1_pg.C_scaffold_6003128
Length=2331
Score = 3677 bits (1991), Expect = 0.0
Identities = 2217/2323 (95%), Gaps = 28/2323 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCAGTACAAGATATTGGTCTATCAGCAGCTATAAATCTATTATCTGCATTTGCT 60
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 1 ATGGCTTCAGTACAAGATATTGGTCTATCTGCAGCTATCAATCTTTTATCTGCATTTGCT 60
Query 61 TTCTTGTTTGCATTTGCTATGCTTAGACTTCAGCCAGTTAACGATAGAGTTTACTTCCCA 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTCTTGTTTGCATTTGCTATGCTTAGACTTCAGCCTGTTAACGATAGAGTTTACTTCCCT 120
Query 121 AAATGGTATCTCAAAGGGATAAGAGGAAGTCCAACGCGTTCTAGAGGAATCATGACTAGA 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGGTATCTCAAAGGGATACGAGGAAGTCCAACGCGTTCTAGAGGAATCATGACTAGA 180
Query 181 TTTGTTAATTTAGATTGGACTACTTATGTCAAGTTTCTTAATTGGATGCCTGCTGCTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 TTTGTTAATTTAGATTGGACTACTTATGTCAAGTTTCTTAATTGGATGCCTGCAGCGCTT 240
Query 241 CAAATGCCTGAACCTGAGCTTATAGAACATGCAGGCCTTGACTCTGCTGTATATATCCGC 300
||||||||||||| |||||||| ||||||||||| || || ||||||||||||||||||
Sbjct 241 AAAATGCCTGAACCCGAGCTTATCGAACATGCAGGGCTCGATTCTGCTGTATATATCCGC 300
Query 301 ATTTACCTTCTTGGATTGAAAATGTTCGTTCCGATAACACTACTTGCTTTTGGAGTTTTG 360
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 ATTTACCTTCTCGGATTGAAAATGTTCGTCCCGATAACACTACTTGCTTTTGGAGTTTTG 360
Query 361 GTTCCTGTCAATTGGACTGGAGAAACTCTAGAAAATATCGATGACTTGACATTCAGTAAC 420
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GTTCCTGTCAATTGGACAGGAGAAACGCTAGAAAATATCGATGACTTGACATTCAGTAAC 420
Query 421 GTCGATAAGCTGTCAATATCAAATGTTCCACCAGGATCGCCGAGGTTTTGGGCACATATA 480
||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 421 GTCGACAAGCTTTCAATATCGAATGTTCCACCAGGATCGCCAAGGTTTTGGGCTCATATA 480
Query 481 ACTATGACATACGTGATTACATTCTGGACTTGCTACATATTATATATGGAATATAAGGCT 540
||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 481 ACTATGACATACGTGTTTACACTCTGGACTTGCTACATATTATACATGGAATATAAGACT 540
Query 541 GTGGCTAATATGAGATTGAGACATCTAGCAGCAGAAAGTCGTCGTCCTGATCAACTCACT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGGCTAATATGAGATTGAGACATCTAGCAGCAGAAAGTCGTCGTCCTGATCAACTCACG 600
Query 601 GTACTTGTAAGAAATGTTCCTCCAGATCCTGATGAATCAGTAAACGAGCATGTTGAGCAC 660
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GTACTCGTGAGAAATGTTCCTCCAGATCCTGATGAATCAGTAAACGAGCATGTGGAGCAC 660
Query 661 TTCTTTTGTGTAAATCATCCAGATCATTATCTTTG----C---CA----TC---A----- 701
||||||||||||||||||||||||||||||||||| | || || |
Sbjct 661 TTCTTTTGTGTAAATCATCCAGATCATTATCTTTGTCATCAGGCACGTTTCTTTAGCTGG 720
Query 702 --G---GTAGTGTACAATGCAAATGACCTTGCAAAATTAGTCGCACAGAGAAAAGCTATG 756
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGAATGTAGTGTACAATGCAAATGACCTTGCAAAATTAGTCGCACAGAGAAAAGCTATG 780
Query 757 CAAAATTGGTTGACGTACTACGAGAATAAATTCGAGAGGAAGCCATCAAGTAGACCAACA 816
||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 781 CAAAATTGGCTGACTTACTACGAGAATAAATTTGAGAGGAAGCCATCAAGTAGGCCAACA 840
Query 817 ACAAAGACAGGTTATGGAGGTTTTTGGGGAACTACAGTTGATGCAATTGACTTCTACACT 876
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 841 ACAAAGACAGGTTATGGAGGTTTTTGGGGAACTACAGTTGATGCGATTGACTTCTATACT 900
Query 877 TCAAAGATGGATATTCTGGCT-GAGCAAGAAGCTGTAGAAAGAGAAAAGATCATGAACGA 935
||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 901 TCAAAGATGGATATTTTGGCTCG-GCAAGAGGCTGTAGAAAGAGAAAAGATCATGAACGA 959
Query 936 TCCTAAGGCTATCATGCCGGCAGCATTTGTTTCCTTCAGATCACGGTGGGGAACAGCTGT 995
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCCTAAGTCTATCATGCCGGCAGCATTTGTTTCCTTCAGATCACGGTGGGGAACAGCTGT 1019
Query 996 TTGTGCTCAAACACAGCAATGCCACAATCCCACAATCTGGTTGACGGAATGGGCTCCCGA 1055
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 TTGTGCTCAAACGCAGCAATGCCACAATCCCACAATATGGTTGACGGAATGGGCTCCCGA 1079
Query 1056 ACCACGCGATGTTTTCTGGGATAATCTCGCTATTCCATATGTTGAGCTCTCAATAAGAAG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACCACGCGATGTTTTCTGGGATAATCTCGCTATTCCATATGTTGAGCTCTCAATAAGAAG 1139
Query 1116 ATTGCTCACAACAGTTGCACTGTTTTTTCTTATTTTCTGCTTCATGATTCCTATAGCATT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATTGCTCACAACAGTTGCACTGTTTTTTCTTATTTTCTGCTTCATGATTCCTATAGCATT 1199
Query 1176 TGTTCAGTCTCTTGCCAACCTTGAAGGGATCCAAAAAGTTCTCCCTTTCTTGAAACCC-G 1234
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1200 TGTTCAGTCTCTTGCAAACCTTGAAGGGATCCAAAAAGTTCTCCCTTTCTT-AAAGCCTG 1258
Query 1235 TGATAGAAATGAAGACTGTAAAGTCTGTAATCCAAGGGTTTCTTCCAGGAATAGCGTTAA 1294
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TAATAGAAATGAAGACTGTAAAGTCTGTAATCCAAGGGTTTCTTCCAGGAATAGCGTTAA 1318
Query 1295 AGATTTTTCTCATCATACTTCCAACTATTCTGATGACAATGTCACAAATTGAAGGATATA 1354
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGATTTTTCTCATCATACTTCCGACTATTCTGATGACAATGTCACAAATTGAAGGATATA 1378
Query 1355 CATCGCTGTCCTATTTAGATAGAAGATCAGCTGAAAAGTATTTCTGGTTCATTATTGTCA 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CATCGCTGTCCTATTTAGATAGAAGATCAGCTGAAAAGTATTTCTGGTTCATTATTGTCA 1438
Query 1415 ATGTCTTTCTTGGAAGCATCATTACCGGGACAGCGTTTCAGCAGCTTAAATCTTTCCTTG 1474
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 ATGTCTTTCTTGGAAGCATCATTACCGGGACAGCATTTCAGCAGCTTAAATCTTTCCTTG 1498
Query 1475 AGCAACCACCAACCGAGATCCCGAAAACAGTTGGTGTGTCAATCCCAATGAAGGCCACAT 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AGCAACCACCAACCGAGATCCCGAAAACAGTTGGTGTGTCAATCCCAATGAAGGCCACAT 1558
Query 1535 TTTTCATCACATATATCATGGTCGATGGTTGGGCTGGCATAGCAGCTGAGATACTCAGAG 1594
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1559 TTTTCATCACTTATATCATGGTGGATGGTTGGGCTGGCATTGCAGCTGAGATACTCAGAG 1618
Query 1595 TGGTTCCATTAGTCATCTTTCACCTGAAAAACACGTTTTTGGTTAAGACAGAACAAGACA 1654
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGGTTCCATTAGTCATTTTTCATCTGAAAAACACGTTTTTGGTTAAGACAGAACAAGACA 1678
Query 1655 GGCAGCAAGCAATGGATCCAGGTCATCTGGACTTTGCAACATCTGAACCACGGATTCAGT 1714
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1679 GGCAGCAAGCAATGGATCCAGGACATCTGGACTTTGCAACATCTGAACCACGGATTCAGT 1738
Query 1715 TCTATTTCTTGCTAGGCCTCGTATACGCTGCTGTTGCGCCAATTCTCCTTCCATTCATTA 1774
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1739 TCTATTTCTTGCTAGGCCTTGTATACGCTGCTGTTGCGCCAATTCTTCTTCCATTTATTA 1798
Query 1775 TCGTCTTCTTTGCTTTCGCATACGTTGTTTTTCGGCATCAGGTTATTAATGTCTACGACC 1834
||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 1799 TCGTCTTCTTTGCTTTCGCCTACGTTGTTTTCCGACATCAGGTTATAAATGTCTACGACC 1858
Query 1835 AGAAATATGAGAGCGGGGCTAGATACTGGCCTGACGTGCATAGACGTTTGATCATATGTC 1894
| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1859 AAAAATATGAGAGTGGGGCTAGATACTGGCCAGACGTGCATAGACGTTTGATCATATGTT 1918
Query 1895 TAATAATATCACAGCTTCTGATGATGGGTCTGCTCAGCACAAAGAAATTTGCAAAAGTAA 1954
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1919 TAATAATATCACAGCTTCTGATGATGGGTTTGCTCAGCACAAAGAAATTTGCAAAAGTAA 1978
Query 1955 CAGCTCTGCTTCTCCCTCAGCCTATCTTAACCTTTTGGTTTTACAGATACTGCGCAGGAC 2014
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 CAGCCCTGCTTCTCCCTCAGCCTATCTTAACCTTTTGGTTTTACAGATACTGCGCAGGAC 2038
Query 2015 GGTTTGAATCGGCCTTCTCAAAATTTCCTTTACAGGAAGCAATGGTGAAGGATACACTAG 2074
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2039 GGTTTGAATCGGCCTTCTCAAAATTTCCCTTACAGGAAGCAATGGTGAAGGATACACTAG 2098
Query 2075 AAAAAGCAACTGAACCGAATCTAAACCTCAAGGAATATCTGAAAGATGCTTACGTGCATC 2134
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2099 AAAAAGCGACTGAACCAAATCTAAACCTCAAGGAATATCTGAAAGAGGCTTACGTGCATC 2158
Query 2135 CGGTTTTTAAAGGCAATGATTTTGACCGACCACGGGTAGTCGATGAGGAGGAAAGTAACC 2194
||||||| |||||||||||||||||||||||||| | |||||||||||||||||| || |
Sbjct 2159 CGGTTTTCAAAGGCAATGATTTTGACCGACCACGAGCAGTCGATGAGGAGGAAAGCAATC 2218
Query 2195 CTCTTGTAAGGACCAAGAGGACTTCTCAAGGTACGACCCGATACAACTCAGAAGCTAGTA 2254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 CTCTTGTAAGGACCAAGAGGACTTCTCAAGGTACGACCCGATACAACTCAGAAGCTAGTA 2278
Query 2255 GCTCTGCTACAACCACTCCTGTAGCCAACAATGACTCTCCTAG 2297
||||||||||| |||||||||||||||||| || |||||||||
Sbjct 2279 GCTCTGCTACAGCCACTCCTGTAGCCAACACTGGCTCTCCTAG 2321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88826451340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5