BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02910.1
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918053 jgi|Araly1|918053|Al_scaffold_0008_2804 198 2e-50
> Ahg918053 jgi|Araly1|918053|Al_scaffold_0008_2804
Length=558
Score = 198 bits (107), Expect = 2e-50
Identities = 145/163 (89%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 1 ATGAATATATTGGTTTTCGTCATCGGCGATGAAGGGGTTTGTAAATCATCATTGGTAACG 60
|||||| || ||| |||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 1 ATGAATCTACTGGCTTTCGTCATCGGTGATAAAGGGGTTGGTAAATCATCATTGGTAACG 60
Query 61 AAGTTTG-CGAATGATAATGA-CCCAAGAGCTACGTATGACAGGAATCCTAGGGGGCATA 118
||||||| || |||||||| | |||||| |||||||||||||||| | || || |||||
Sbjct 61 AAGTTTGCCG-ATGATAAT-AGCCCAAGGGCTACGTATGACAGGATTTCTTTGGAGCATA 118
Query 119 AGATAGAAATTGACATTGATGGTCGAAGATGGATGTTTAAGAT 161
||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 119 AGATAGAAATTGACATTGATGGTCGAAAATGGATGTTGAAGAT 161
Score = 99.0 bits (53), Expect = 2e-20
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 227 AAGGGGTTGGTAAATCATCATTGGTAACGAAATTTGCCGAGGATAATGGCCCAATGGCTG 286
||||||||||||||||||||||||||||||| |||||||| |||||| |||||| ||||
Sbjct 32 AAGGGGTTGGTAAATCATCATTGGTAACGAAGTTTGCCGATGATAATAGCCCAAGGGCTA 91
Query 287 CATATGACATGAATTCT 303
| ||||||| || ||||
Sbjct 92 CGTATGACAGGATTTCT 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13621545273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5