BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02940.1
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490265 jgi|Araly1|490265|fgenesh2_kg.6__3399__AT4G02940.1 2996 0.0
> Ahg490265 jgi|Araly1|490265|fgenesh2_kg.6__3399__AT4G02940.1
Length=2051
Score = 2996 bits (1622), Expect = 0.0
Identities = 1935/2075 (93%), Gaps = 65/2075 (3%)
Strand=Plus/Plus
Query 42 ACCCGACCCGGCCCACATTTTAAACCCATTTT-AGCC-TTTTCTGTTTCCGCCGCCGACT 99
|||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||
Sbjct 30 ACCCGACCCGGCCCACATTTCCAACCCATTTTCA-CCTTTTTCTGTTTCCGCCGCCGACT 88
Query 100 GATCGGAATAATCGATCAAAGAGAGAACAACTGAATC-TTCGCCGGA-TACTACGCCGAT 157
|||| | ||| | ||||||| ||||||||| ||| ||||| | | ||||||||
Sbjct 89 GATC-G----ATC---C--CGAGAGAATAACTGAATCTTTCACCGGAGTTCAACGCCGAT 138
Query 158 GACGATTGCGGCAGCGCCAGCACGCCAGACAGATCGATCAGCCACTGGTTTCAACCCTGC 217
||||||||||||||| | |||||||||||||||||||||| ||||||||||| | ||
Sbjct 139 GACGATTGCGGCAGCACAAGCACGCCAGACAGATCGATCAACCACTGGTTTC-A--CT-- 193
Query 218 TTACGTC-ACGACGGCGAAGGCGGTGAGC-GTTCCGGTTCAAGTTCCTCCGGCG-ACTGT 274
|| || | ||||||||||||||||||| | ||||||||||||||||| |||| | |||||
Sbjct 194 TT-CG-CAACGACGGCGAAGGCGGTGA-CTGTTCCGGTTCAAGTTCCACCGG-GAACTGT 249
Query 275 GGTTTCCGAAGGATTAGGTAAAGATGCGTTGATCTCATGGTTCAGAGGAGAATTCGCTGC 334
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 250 GGTTTCCGAAGGATTAGGTAAAGATGCGTTAATCTCGTGGTTCAGAGGAGAATTCGCGGC 309
Query 335 GGCAAACGCGATAATCGACGCGATGTGCTCGCATCTAAGGATAGCTGAAGAAGCGGTATC 394
||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 310 GGCGAACGCTATAATCGACGCGATGTGCTCGCATCTTAGGATAACTGAAGAAGCGGTGTC 369
Query 395 TGGATC-GGAGTACGAAGCTGTATTCGCGGCGATCCATCGCCGTCGTCTGAATTGGATCC 453
|||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 370 TGGATCGGGA-TACGAAGCTGTTTTCGCGGCGATCCATCGCCGGCGTCTGAATTGGATCC 428
Query 454 CTGTTCTTCAGATGCAGAAGTATCATTCCATCGCTGAAGTAGCGATCGAGCTTCAGAAAG 513
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 429 CTGTTCTTCAGATGCAGAAGTATCATTCCATCGCTGAAGTCGCGATCGAGCTTCAAAAAG 488
Query 514 TGGCGGCTAAGAAAGCGGAGGATCTGAAACAGAAGAAAACAGAGGAGGAGGCGGAGGAAG 573
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 489 TGGCGGCTAAGAAAGCGGAGGATCTGAAACAGAAGAAAAC--A-GAGGA---GGAGGAAG 542
Query 574 ATCTGAAAGAGGTGGTGGCGACGGAGGAAGAGGAAGT---GAAGAAAGAGTGTTTTAACG 630
|||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||
Sbjct 543 ATCTGAAAGA---GGTGGCGGCGGAGGAGGAGGAAGTGGAGAAGAAAGATTGTTTTAACG 599
Query 631 GCGAGAAAGTAACGGAGAATGACGTAAACGGAGATGTAGAAGACGTTGAAGATGATTCAC 690
|||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 GCGAGAAACTAACGGAAAATGACGTAAACGGAGATGTGGAAGACGTTGAAGATGATTCAC 659
Query 691 CAACTAGTGATATCACTGATTCAGGTTCTCATCAGGATGTTCACCAAACTGTTGTTGCGG 750
||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 660 CAACTAGTGATATCACTGATTCAGGTTCTCACCAGGATGTTCACCAAACTGCTGCTGCGG 719
Query 751 ATACTGCACATCAGATTATATGCCATAGCCATGAAGATTGTGATGCACGTTCATGTGAGA 810
|||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 720 ATACGGCACATCAGATAATATGCCAGAGCCATGAAGATTGTGAAGCACGGTCATGTGAGA 779
Query 811 TCAAACCTATCAAAGGTTTCCAAGCTAAAGAACAAGTCAAAGGCCACACTGTGAATGTTG 870
| || |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 780 TTAAGCCTATCAAAGGTTTCCAAGCCAAAGAGCAAGTCAAAGGACACACTGTGAATGTTG 839
Query 871 TGAAAGGACTAAAGCTGTATGAAGAGTTACTTAAAGAAGATGAGATATCTAAATTGTTAG 930
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 840 TGAAAGGACTAAAGCTGTATGAAGAATTACTTAAAGAAGATGAGATATCTAAATTGATCG 899
Query 931 ACTTTGTGGCAGAACTACGAGAAGCTGGCATAAACGGGAAGCTTGCAGGTGAGAGCTTTA 990
|||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 900 ACTTTGTGGCAGAACTCCGAGAAGCTGGCATTAACGGAAAGCTAGCAGGTGAGAGCTTTA 959
Query 991 TACTGTTCAACAAACAGATTAAAGGGAACAAGAGAGAGCTGATTCAGCTTGGTGTCCCCA 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TACTGTTCAACAAACAGATTAAAGGGAACAAGAGAGAGCTGATTCAGCTTGGTGTCCCCA 1019
Query 1051 TCTTTGGTCATGTCAAGGCGGATGAAAACTCTAACGACACCAACAACTCTGTTAACATCG 1110
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 TCTTTGGCCATGTTAAGGCGGATGAAAACTCTAACGACACCAACAACTCTGTTAACATTG 1079
Query 1111 AGCCAATTCCACCACTTCTTGAGAGTGTCATTGATCACTTTGTCACATGGAGACTCATCC 1170
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1080 AGCCAATTCCACCACTTCTTGAGAGTGTGATTGATCACTTTGTCACATGGAGACTCATCC 1139
Query 1171 CAGAATACAAGAGACCTAACGGCTGTGTCATCAACTTCTTTGAAGAGGGTGAATACTCAC 1230
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CAGAATACAAGAGACCAAACGGCTGTGTCATCAACTTCTTTGAAGAGGGTGAATACTCAC 1199
Query 1231 AGCCTTTCCTCAAACCACCTCACT-TAGAACAACCAATCTCCACTCTTGTCCTCTCTGAA 1289
||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||
Sbjct 1200 AGCCTTTCCTCAAACCACCACA-TCTAGAACAACCAATCTCCACTCTTGTTCTCTCTGAA 1258
Query 1290 TCAACAATGGCCTATGGACGCATTCTCTCAAGTGACAACGAAGGCAACTTCAGAGGACCT 1349
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 TCAACAATGGCCTATGGACGCATTCTCTCTAGTGACAACGAAGGCAACTTCAGAGGACCT 1318
Query 1350 TTGACACTCTCTCTCAAACAAGGATCTTTGTTGGTGATGAGAGGGAACAGTGCAGACATG 1409
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTAACTCTTTCTCTCAAACAAGGATCTTTGTTGGTGATGAGAGGGAACAGTGCAGACATG 1378
Query 1410 GCAAGACATGTAATGTGTCCATCACAAAACAAAAGAGTAAGCATCACATTCTTTCGTATT 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GCAAGACATGTAATGTGTCCATCACAAAACAAAAGAGTAAGCATCACATTCTTTCGTATT 1438
Query 1470 CGACCTGACACATATCATAACCATTCACAACCCAACAGTCCTCGCAACGACGGTGTCATG 1529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1439 CGACCTGACACATATCATAACCATTCACAACCCAACAGTCCTCGCAACGACGGTGTAATG 1498
Query 1530 ACAATGTGGCAACCCTACCAAATGACACCAACTCCATTCCTCAATGGTTATGATCATTCA 1589
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1499 ACAATGTGGCAACCTTACCAAATGACACCAACTCCATTCCTCAATGGCTATGATCATTCA 1558
Query 1590 ATTGACATGATGCCAAAACTTGGAGTCCTACGTCCTCCAATGGTCATGATGGCACCACCA 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ATTGACATGATGCCAAAACTTGGAGTCCTACGTCCTCCAATGGTCATGATGGCACCACCA 1618
Query 1650 CCGGTTCAACCAATGATATTACCAAGTCCCAATGTGATGGGAACCGGTGGTGGTACCGGT 1709
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CCAGTTCAACCAATGATATTACCAAGTCCCAATGTGATGGGAACCGGTGGTGGTACCGGT 1678
Query 1710 GTTTTCTTACCATGGGCCTCTGTTAATAGCTCAAGAAAACATGTGAAGCATTTGCCTCCA 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GTTTTCTTACCATGGGCCTCTGTTAATAGCTCAAGAAAACATGTGAAGCATTTGCCTCCA 1738
Query 1770 CGCGCGCAGAAGAAGCGATTACTTCCGCTTCCTCCTGCTGCTTCTTCTTCTCCAGCTGGA 1829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CGCGCGCAGAAGAAGCGATTACTTCCGCTTCCTCCTGCTGCTTCTTCTTCTCCAGCTGGA 1798
Query 1830 GGATCCACCTCTGAGCCTGTGATCACTGTAGGTTAATCCTATTCGACTTCTTCAGCaaaa 1889
||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct 1799 GGATCCACCTCTGAGCCTGTGATCAGTGTCGGTTAAGCCTATTCGACTTCTTCAGCAAAA 1858
Query 1890 agaaaaaaaaaCTTGGAATTGGTCTTTTTCTAAGCAATGCTCTGTTTCTTCTCTGTTCTG 1949
| |||||||| ||| ||| |||||| | ||||||| |||||||||||||||||| || |
Sbjct 1859 A-AAAAAAAAGCTTTGAACTGGTCTGTGTCTAAGCCATGCTCTGTTTCTTCTCT-TT-T- 1914
Query 1950 TTTCtttttttGTTCTTTCAAATTCAGTTTAGGTTAACTCAGGTTTTATAGATAGAATTA 2009
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 ---C---------------AAATTCAGTTTAGGTTAACTCAGGTTTTATAGATAGAATTA 1956
Query 2010 AGTTTGTTACATCCCCCGAGGCATGTGTTTTCTACTTTGTGTACGATTTTATTATCAGTA 2069
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1957 AGTTTGTTACATCCCCAGAGGCATGTGTTTTCTATTTTGTGTACGATTTTATTATCAGTA 2016
Query 2070 TATTCTCAAAATGTTACCTTTCATTGCTAGTTTTC 2104
|||||||||||||||||||||||||||||||||||
Sbjct 2017 TATTCTCAAAATGTTACCTTTCATTGCTAGTTTTC 2051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79456251070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5