BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02980.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490264 jgi|Araly1|490264|fgenesh2_kg.6__3398__AT4G02980.1 1177 0.0
> Ahg490264 jgi|Araly1|490264|fgenesh2_kg.6__3398__AT4G02980.1
Length=728
Score = 1177 bits (637), Expect = 0.0
Identities = 697/727 (96%), Gaps = 0/727 (0%)
Strand=Plus/Plus
Query 15 GAAGCATCGAGAAAATGATCGTACTTTCTGTTGGTTCCGCTTCTTCATCTCCGATCGTCG 74
|||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 GAAGCATCTAGAAAATGATCCTACTTTCGGTTGGTTCCGCTTCGTCATCTCCGATCGTCG 60
Query 75 TCGTCTTTTCCGTCGCGCTTCTTCTGTTCTACTTCTCTGAAACTTCTCTAGGAGCTCCTT 134
||| || ||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 61 CCGTATTCTCCGTCGCGCTTCTTCTGTTCTATTTCTCTGAAACTACTCTAGGAGCTCCTT 120
Query 135 GTCCCATCAATGGCTTGCCAATCGTGAGGAATATTAGTGACCTTCCTCAGGATAACTATG 194
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GTCCCATCAATGGCTTGCCAATCGTGAGGAATATTAGTGACCTTCCTCAAGATAACTATG 180
Query 195 GAAGACCAGGTCTTTCCCACATGACTGTTGCTGGCTCCGTATTGCATGGAATGAAAGAGG 254
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GAAGACCAGGTCTTTCCCACATGACTGTTGCTGGCTCCGTATTGCACGGAATGAAAGAGG 240
Query 255 TTGAAATATGGCTTCAGACATTTGCTCCAGGTTCAGAGACACCAATTCACAGGCACTCCT 314
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGAAATATGGCTTCAAACATTTGCTCCAGGTTCAGAGACACCAATTCACAGGCACTCCT 300
Query 315 GTGAAGAGGTTTTTGTTGTCCTAAAGGGCAGTGGTACTCTGTATCTCGCTGAAACACATG 374
|||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 301 GTGAAGAGGTCTTTGTTGTCCTAAAGGGCAGTGGTACTCTGTATCTTTCTGAGACCCATG 360
Query 375 GAAATTTCCCTGGGAAACCAATCGAATTTCCAATCTTTGCCAACAGTACAATTCATATTC 434
|||||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||
Sbjct 361 GAAATTTCCCTGGGAAACCAATTGAATTTCCTATCTTTGCTAACAGTACACTTCATATTC 420
Query 435 CGATCAATGATGCTCATCAGGTCAAAAACACCGGTCATGAGGACCTGCAGGTGTTGGTTA 494
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 CGATCAATGATGCTCATCAGGTCAAGAACACCGGTCATGAGGACCTGCAGGTGTTGGTTA 480
Query 495 TCATATCTCGGCCGCCTATTAAAATCTTCATCTACGAAGACTGGTTTATGCCACACACTG 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCATATCTCGGCCGCCTATTAAAATCTTCATCTACGAAGACTGGTTTATGCCACACACTG 540
Query 555 CTGCAAGGCTGAAGTTCCCTTACTATTGGGATGAGCAATGCATTCAAGAATCACAAAAAG 614
|||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 541 CTGCGAGGTTGAAGTTCCCTTACTATTGGGATGAGCAATGCGTTCAAGAATCGCAAAAAG 600
Query 615 ACGAGCTTTAAAGCAAAGTCCGAGGCTAAAAGCAAGCACAACCTTTAGATAGTAAAATCA 674
|||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 601 ACGAGCTTTAAAGCAAAGTCCGAGGCCAAAACCAAGCACACCCTTTAGATAGTAAAATCA 660
Query 675 TAGTTGAGGTTTTGTGACACTACGTAGATACTGGTAAATTGGCAAGGATTTTACATGAAT 734
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TAGTTGAGGTTTTGTGACATTACGTAGATACTGGTAAATTGGCAAGGATTTTACATGAAT 720
Query 735 GTTGTTG 741
|||||||
Sbjct 721 GTTGTTG 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5