BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G02990.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490263 jgi|Araly1|490263|fgenesh2_kg.6__3397__AT4G02990.1 2647 0.0
> Ahg490263 jgi|Araly1|490263|fgenesh2_kg.6__3397__AT4G02990.1
Length=1815
Score = 2647 bits (1433), Expect = 0.0
Identities = 1673/1784 (94%), Gaps = 35/1784 (2%)
Strand=Plus/Plus
Query 1 AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTCAGCTCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 AAAAAACCTTACCCGCTCCTCTAAAACCCTCGTCTTCTCCGATATCTTTCCTTATCTCCG 60
Query 61 GTAAAGAATGAAGATTAGGTTCTGTAATGGCTTCACAAAGCCTGGGTTTTTGCTAGTTCA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 61 GTAAAGAATGAAGATTAGGTTCTGTAGCGGCTTCACAAAGCCTGGGTTTTTGTTAGTTCA 120
Query 121 CTTTGAGCCACCATC-tttttttGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG 179
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTGAGCCACCATCGTTTTTTT-CCGTTAGATCTCGTTCACTCTCTGATTCCACTTATG 179
Query 180 GCAACTTATGCAACCACAAGAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCG 239
||||| | |||||||||||||||| | ||||||||| | |||||||||||||
Sbjct 180 GCAAC---T------ACAAGAAGAGACCTGGAATTGGAATTGG--T-ACTGTTCAATGCG 227
Query 240 CTATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGA-T--TCACCGAGAAGAGAAAGGT 296
|||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||
Sbjct 228 CTATTGCAAATCGGAGATTTTCTTCACGTTCTGTGGATTCATCACCGAAAAGAGAAAGGT 287
Query 297 CTTCTCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAG 356
| ||||| || ||||||| | | || |||||||| ||||||||||| |||||||
Sbjct 288 CGTCTCG----TC--CTTCTTC--G-A--GA-AGGGATAGGGATAAGGATAAAGGAAGAG 335
Query 357 ATTCTAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGAATAAGGAGAAAGCTGCTA 416
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 336 ATTCTCAGTCTTTGTATAGTCGTCCTAGTTTGTTAGAGATGAATAAGGAGAAAGCTGCTA 395
Query 417 ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 ATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATG 455
Query 477 GCCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTCGAGTTTCTTCACAAGT 536
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 456 GTCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTGGAGTTTCTTCACAAGT 515
Query 537 TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGA 575
Query 597 AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTCAGGAAATCGACTTTCA 656
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 576 AGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTGAGGAAATCGACTTTCA 635
Query 657 CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCACT-CTAGCGTTGTTATAGATCTTGCA 715
|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 636 CTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCA-TGCTAGTGTTGTTATAGATCTTGCA 694
Query 716 CCGGTGGTTAAGTATCTTCAAGGACTGGATATTAAACCGAGTGATGTACCTCGGGTGCTT 775
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 695 CCGGTGGTCAAGTATCTTCAAGGACTGGATATTAAACCCAGCGATGTACCTCGGGTGCTT 754
Query 776 GAGAGGTATCCAGAAGTTTTGGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCT 835
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 755 GAGAGGTATCCAGAAGTTTTAGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCG 814
Query 836 TATTTGGTTGGTATAGGTGTAGCTAGGAGGGAGATTGGGGGTATTTTAACACGGTACCCT 895
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 815 TATTTGGTGGGTATAGGTGTAGCTAGGAGGGAGATTGGTGGTGTTTTAACACGGTACCCT 874
Query 896 GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGGTT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGCAC 934
Query 956 CTTGGTATTCCGAGACTGGCTGCAGCTAGGTTGATAGAGAAGCGGCCTCACATACTCGGG 1015
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 935 CTTGGTATTCCGAGACTGGCTGTAGCTAGGTTGATTGAGAAGCGGCCTCACATTCTCGGG 994
Query 1016 TTTGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA 1075
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TTCGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGA 1054
Query 1076 GAAACATCTCTTCCTTCTATAATTGCGCAGTATCCTGAAATCATCGGAATCGACCTTAAA 1135
||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1055 GAAACATGTCTTCCTTCTATAATTGCACAGTATCCTGAAATCATAGGAATCGACCTGAAA 1114
Query 1136 CCTAAGCTCGACACACAGAGGAAGCTACTTTGTTCAGCCATTCATCTAAATCCAGAGGAT 1195
|||||||| || || || | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1115 CCTAAGCTTGAGACGCAAAAGAAGCTACTTTGTTCAGCCATTGATCTAAATCCAGAGGAT 1174
Query 1196 CTTGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA 1255
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ATCGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTA 1234
Query 1256 AAGCACATTGATTTCCTTACCAAGTGTGGATTTTCGATAGACCAAACAAGGGAAATGGTA 1315
||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct 1235 AAGCACATTGACTTCCTTACCAAGTGTGGGTTTTCAATCGACCAAACGAGGGAAATGGTA 1294
Query 1316 ATCGGGTGTCCTCAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAGTAC 1375
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1295 ATCGGATGTCCACAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAATAC 1354
Query 1376 TTCCAAAAGGAAATGAAAAGACCTCTTCAAGACCTTGTGGATTTCCCCGCATTCTTTACG 1435
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1355 TTCCAAAAGGAAATGAGAAGACCTCTTCAAGATCTTGTGGATTTCCCCGCATTCTTTACC 1414
Query 1436 TATGGGCTTGAGTCCACGGTAAAGCCGAGACACAAGAAGATAATCAAGAAGGGAATCAAA 1495
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1415 TATGGGCTTGAGTCCACGGTAAAGCCGAGGCACAAGAAGATAATCAAGAAAGGAATAAAA 1474
Query 1496 TGTTCATTGGCTTGGATGCTAAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC 1555
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TGTTCATTGGCTTGGATGCTCAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTAC 1534
Query 1556 GACACAATAGATATAGAAGAGGTAGAAACTGATCCATCTTCTTTTGACATGAATACATTG 1615
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1535 GACACAATAGATATAGAAGAGGTAGAATCTGATCCATCTTCTTTTGACATGAGTACATTA 1594
Query 1616 ATGCAACCTGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAGATGATGAC 1675
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1595 ATGCAACCCGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAAATGACGAC 1654
Query 1676 GACGAGGAGTTTGCATAAACCCGGAGTT--C--AACAAAGAAAAGGTCCAAATACAGACA 1731
|||||||||||||| |||||| |||||| | |||||| ||||| ||||||| ||||||
Sbjct 1655 GACGAGGAGTTTGCTTAAACCTGGAGTTTGCTTAACAAAAAAAAGCTCCAAATGCAGACA 1714
Query 1732 ATGAATCGAAGAACAAGCTTCATGTCTTGATGTATCATCATCAT 1775
|||||| |||| |||||||| |||||||||| |||||||||||
Sbjct 1715 ATGAATTGAAGTACAAGCTTTGTGTCTTGATGGATCATCATCAT 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5